HHsearch alignment for GI: 254781167 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.01 E-value=0.0003 Score=51.13 Aligned_cols=175 Identities=14% Similarity=0.203 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHC-CCCCCCEEEEEECCCH-HHHHHHHHHHHCCCCCEEE
Q ss_conf 9778607899999982898299817033247760897898302-7457846999826998-9999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGF-STQEKPLALQIGGADI-SKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~-~~~e~p~~~Ql~g~~p-~~~~~aa~~~~~~g~~~id 78 (322)
T Consensus 10 M~~vs~~~LaaAvs~aGglG~l~~~~~~~~~l~----~~i~~~~~~~~~pfgvnl~~~~~~~~~~~~~~~~~~~~v~~v~ 85 (236)
T cd04730 10 MAGVSTPELAAAVSNAGGLGFIGAGYLTPEALR----AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVS 85 (236)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHH----HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 778786999999996898558578889999999----9999999746997244332467763689999999976999999
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
T Consensus 86 ~~~g~p~--------------------~~v~~l~~-~g~~v~~~v~-----------s~~~A~~a~~~GaD~iv~qG~eA 133 (236)
T cd04730 86 FSFGPPA--------------------EVVERLKA-AGIKVIPTVT-----------SVEEARKAEAAGADALVAQGAEA 133 (236)
T ss_pred ECCCCCH--------------------HHHHHHHH-CCCEEEEECC-----------CHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8798978--------------------99999998-2998999589-----------89999999981899899977777
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 64025774212276610467876667388753025777789989888742-0352344122
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
T Consensus 134 --GGH~g----~~~~~~~~lv~~v~~~~-~ipviaAGGI~~g~~i~aal~lGA~gV~~GTr 187 (236)
T cd04730 134 --GGHRG----TFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTR 187 (236)
T ss_pred --CCCCC----CCCCCHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHCCCEEEECCH
T ss_conf --77889----87555677999999982-98689654627789999999808979995538