HHsearch alignment for GI: 254781167 and conserved domain: cd04734

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=94.59  E-value=0.14  Score=31.44  Aligned_cols=89  Identities=22%  Similarity=0.412  Sum_probs=54.0

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH--HHHHCCCCCC----CCCCCCCH------HHHHHHHHHHC-CCCCCCC--------C
Q ss_conf             1455432000122012100135--6640257742----12276610------46787666738-8753025--------7
Q gi|254781167|r  136 LRNLVKSIKKSGVNGIWIHARK--AILKGLSPKD----NRKIPNLD------YDIVYEIKKEN-PDLFIGL--------N  194 (322)
Q Consensus       136 ~~~~~~~~~~~g~~~itiH~Rt--~~~~g~s~~~----~~~~~~~~------~~~i~~l~~~~-~~~~i~~--------N  194 (322)
T Consensus       143 f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i~~Ris~~~~~~  222 (343)
T cd04734         143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE  222 (343)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             99999999973998898445777469984698558996767988899989999999999998198776158867623568


Q ss_pred             CCCCCHHHHHHH---HH--C-CCCEEEECCCCCHHHH
Q ss_conf             777899898887---42--0-3523441220001243
Q gi|254781167|r  195 GGLEDMSQALKI---LP--S-VDGVMIGRAAYKNSAM  225 (322)
Q Consensus       195 Gdi~~~~~a~~~---l~--~-~dgvMigRga~~~P~i  225 (322)
T Consensus       223 ~g-~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~  258 (343)
T cd04734         223 GG-LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLG  258 (343)
T ss_pred             CC-CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             98-9989999999999966997689965675433222