HHsearch alignment for GI: 254781167 and conserved domain: cd04735

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.94  E-value=2.3e-09  Score=88.90  Aligned_cols=220  Identities=18%  Similarity=0.227  Sum_probs=137.8

Q ss_pred             CCCHHHHHHHHHHCCCEEEECCCCC--CHHHHC-------CCH-----HHHH-HCCCCCCCEEEEEEC------------
Q ss_conf             8607899999982898299817033--247760-------897-----8983-027457846999826------------
Q gi|254781167|r    4 WTDRHYRFFARLLTNNALLYTEMIV--ADAILR-------GDK-----KNIL-GFSTQEKPLALQIGG------------   56 (322)
Q Consensus         4 ~Td~~fR~l~r~~~~~~~~~TEmi~--a~~l~~-------~~~-----~~~~-~~~~~e~p~~~Ql~g------------   56 (322)
T Consensus        33 ~t~~~~~yy~~rAgG~GliIte~~~V~~~g~~~~~~~~i~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~  112 (353)
T cd04735          33 ITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPG  112 (353)
T ss_pred             CCHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCC
T ss_conf             99999999999839614999894888613257899876479999999999999998579918975113665466100789


Q ss_pred             CC----------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHH
Q ss_conf             99----------------------------8999998875310453777442564---------1367766688999985
Q gi|254781167|r   57 AD----------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLML   99 (322)
Q Consensus        57 ~~----------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~   99 (322)
T Consensus       113 ~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eN  192 (353)
T cd04735         113 GDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLEN  192 (353)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             98657777576778999886199999999999999999999983999899754657599985399889984736798899


Q ss_pred             HHHHHHHHHHHHHCCCC------EEEEEEEECCCCC----CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             58999999999850279------0699986113456----6532201455432000122012100135664025774212
Q gi|254781167|r  100 NPDIVGDCIAAMCKALS------IPVTVKCRIGVDD----QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR  169 (322)
Q Consensus       100 ~p~~~~~iv~~~~~~~~------~pvsvK~RlG~~~----~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~  169 (322)
T Consensus       193 R~Rf~~Eii~aIr~~vg~~~~~df~vgv--Ris~~e~~~~G~~~~e~~~~~~~l~~~gvD~l~vs~g~~--~--~-~~-~  264 (353)
T cd04735         193 RMRFPLAVVKAVQEVIDKHADKDFILGY--RFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF--D--R-KS-R  264 (353)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEEEE--ECCHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC--C--C-CC-C
T ss_conf             9889999999999985400589733675--158654147999999999999999847998899603776--6--7-77-6


Q ss_pred             CCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             27661046787666738-8753025777789989888742-03523441220001243999999
Q gi|254781167|r  170 KIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDE  231 (322)
Q Consensus       170 ~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~  231 (322)
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~iPvi~~G~i~~~~~ae~~l~~gaD~V~~gR~liadPd~~~K~~~  328 (353)
T cd04735         265 RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIKE  328 (353)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHC
T ss_conf             6777535589999999678980999899998999999998699829986999979319999985