Query gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 322
No_of_seqs 150 out of 2834
Neff 6.8
Searched_HMMs 39220
Date Mon May 30 06:54:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781167.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11815 tRNA-dihydrouridine s 100.0 0 0 679.9 26.8 312 1-321 18-329 (333)
2 TIGR00737 nifR3_yhdG putative 100.0 0 0 662.2 23.4 302 1-318 15-335 (336)
3 PRK10415 tRNA-dihydrouridine s 100.0 0 0 608.8 26.1 300 1-318 17-320 (321)
4 pfam01207 Dus Dihydrouridine s 100.0 0 0 600.3 25.9 300 1-318 5-308 (309)
5 TIGR00742 yjbN TIM-barrel prot 100.0 0 0 596.1 20.7 311 1-320 8-326 (326)
6 COG0042 tRNA-dihydrouridine sy 100.0 0 0 558.5 25.6 297 1-316 18-319 (323)
7 PRK10550 tRNA-dihydrouridine s 100.0 0 0 538.5 21.7 290 1-314 8-310 (312)
8 cd02801 DUS_like_FMN Dihydrour 100.0 0 0 496.7 18.0 220 1-233 7-230 (231)
9 KOG2335 consensus 100.0 0 0 443.7 19.6 282 1-313 26-312 (358)
10 cd02911 arch_FMN Archeal FMN-b 100.0 0 0 392.1 14.1 201 1-223 7-227 (233)
11 KOG2333 consensus 100.0 0 0 380.0 16.9 275 3-298 274-564 (614)
12 KOG2334 consensus 100.0 3E-32 7.6E-37 257.6 12.0 214 1-228 18-254 (477)
13 TIGR01037 pyrD_sub1_fam dihydr 99.9 8.7E-25 2.2E-29 202.5 8.2 218 2-232 21-287 (308)
14 cd04740 DHOD_1B_like Dihydroor 99.8 2.8E-18 7.2E-23 154.6 10.6 175 44-232 86-276 (296)
15 PRK08318 dihydropyrimidine deh 99.8 1.2E-17 3E-22 150.0 13.3 166 47-222 99-288 (413)
16 PRK07259 dihydroorotate dehydr 99.7 1.3E-17 3.4E-22 149.5 10.7 175 44-232 88-279 (301)
17 cd02810 DHOD_DHPD_FMN Dihydroo 99.7 5.7E-18 1.4E-22 152.3 7.1 174 46-231 97-288 (289)
18 PRK07565 dihydroorotate dehydr 99.7 9.6E-16 2.4E-20 135.9 14.0 170 46-230 100-283 (333)
19 cd02940 DHPD_FMN Dihydropyrimi 99.7 1.9E-16 4.9E-21 141.0 8.9 175 47-231 99-297 (299)
20 COG0167 PyrD Dihydroorotate de 99.7 8.6E-16 2.2E-20 136.3 12.2 173 47-233 96-288 (310)
21 cd04739 DHOD_like Dihydroorota 99.7 3.9E-15 1E-19 131.4 14.2 170 46-230 98-281 (325)
22 cd02803 OYE_like_FMN_family Ol 99.6 5.5E-14 1.4E-18 123.0 11.6 224 4-230 31-325 (327)
23 pfam01180 DHO_dh Dihydroorotat 99.5 5.3E-14 1.4E-18 123.0 10.4 175 44-233 90-286 (290)
24 TIGR00736 nifR3_rel_arch TIM-b 99.5 9.7E-14 2.5E-18 121.1 8.3 207 1-225 1-232 (234)
25 PRK02506 dihydroorotate dehydr 99.5 7.1E-13 1.8E-17 114.7 11.1 175 45-231 90-284 (308)
26 cd04738 DHOD_2_like Dihydrooro 99.4 7.5E-13 1.9E-17 114.6 9.2 179 40-232 121-326 (327)
27 cd04741 DHOD_1A_like Dihydroor 99.3 1.5E-11 4E-16 104.9 10.4 178 45-234 89-291 (294)
28 PRK05286 dihydroorotate dehydr 99.3 2.3E-11 5.9E-16 103.6 9.6 182 39-234 126-333 (336)
29 PRK13523 NADPH dehydrogenase N 99.3 1.2E-10 3E-15 98.4 12.7 228 4-240 35-329 (337)
30 cd02932 OYE_YqiM_FMN Old yello 99.2 4.4E-11 1.1E-15 101.5 7.6 165 60-230 154-334 (336)
31 cd04733 OYE_like_2_FMN Old yel 99.2 1.1E-10 2.9E-15 98.5 7.1 226 4-230 33-336 (338)
32 cd02931 ER_like_FMN Enoate red 99.2 9.9E-11 2.5E-15 98.9 6.8 225 4-231 33-350 (382)
33 pfam00724 Oxidored_FMN NADH:fl 99.1 8.8E-10 2.2E-14 91.9 11.1 224 4-231 33-331 (336)
34 cd04734 OYE_like_3_FMN Old yel 99.1 2.8E-10 7.1E-15 95.6 6.6 226 4-231 31-330 (343)
35 cd02930 DCR_FMN 2,4-dienoyl-Co 99.0 8.6E-10 2.2E-14 92.0 7.7 213 16-231 44-321 (353)
36 cd02933 OYE_like_FMN Old yello 99.0 2E-09 5.2E-14 89.2 7.5 215 5-231 34-329 (338)
37 cd02929 TMADH_HD_FMN Trimethyl 99.0 3.2E-09 8.2E-14 87.8 8.4 209 16-231 49-334 (370)
38 PRK08255 salicylyl-CoA 5-hydro 99.0 1.8E-08 4.7E-13 82.2 12.0 226 4-235 434-741 (770)
39 cd04735 OYE_like_4_FMN Old yel 98.9 2.3E-09 5.8E-14 88.9 6.7 220 4-231 33-328 (353)
40 PRK10605 N-ethylmaleimide redu 98.8 2.3E-08 5.9E-13 81.5 8.0 160 60-231 159-336 (362)
41 COG1902 NemA NADH:flavin oxido 98.8 5.7E-08 1.5E-12 78.6 8.9 224 4-234 37-336 (363)
42 cd04747 OYE_like_5_FMN Old yel 98.6 1.1E-07 2.8E-12 76.5 6.3 228 5-245 32-354 (361)
43 KOG2334 consensus 98.6 8.5E-08 2.2E-12 77.3 5.7 167 43-227 243-422 (477)
44 cd04722 TIM_phosphate_binding 98.4 6.8E-06 1.7E-10 63.2 11.8 176 11-217 19-200 (200)
45 KOG1799 consensus 98.3 5E-07 1.3E-11 71.6 4.2 160 45-215 199-390 (471)
46 PRK03220 consensus 98.3 6.8E-06 1.7E-10 63.3 8.3 171 39-237 65-253 (257)
47 PRK02621 consensus 98.2 5.5E-06 1.4E-10 64.0 7.3 165 47-238 72-250 (254)
48 KOG1436 consensus 98.2 3.3E-05 8.4E-10 58.2 10.6 179 39-231 170-376 (398)
49 cd02922 FCB2_FMN Flavocytochro 98.2 3E-05 7.5E-10 58.6 10.1 162 41-227 111-306 (344)
50 COG0106 HisA Phosphoribosylfor 98.2 8.8E-06 2.2E-10 62.4 7.3 155 46-229 72-234 (241)
51 PRK02083 imidazole glycerol ph 98.1 4.9E-05 1.3E-09 56.9 9.4 171 39-237 64-248 (253)
52 TIGR00007 TIGR00007 phosphorib 98.1 7.2E-06 1.8E-10 63.1 5.0 147 49-224 73-236 (241)
53 cd04729 NanE N-acetylmannosami 98.0 9.1E-05 2.3E-09 54.9 10.6 129 62-226 82-215 (219)
54 cd02809 alpha_hydroxyacid_oxid 98.0 4.6E-05 1.2E-09 57.1 9.1 144 47-228 115-263 (299)
55 pfam01070 FMN_dh FMN-dependent 98.0 5.3E-05 1.4E-09 56.7 9.2 149 47-227 108-259 (301)
56 PRK13585 1-(5-phosphoribosyl)- 98.0 2.4E-05 6.1E-10 59.2 7.4 158 48-233 74-238 (240)
57 PRK13597 imidazole glycerol ph 98.0 3.1E-05 7.8E-10 58.4 7.8 171 39-237 65-246 (252)
58 cd04731 HisF The cyclase subun 98.0 4.2E-05 1.1E-09 57.4 8.4 168 39-234 61-241 (243)
59 cd04730 NPD_like 2-Nitropropan 98.0 0.0003 7.7E-09 51.1 12.7 175 1-218 10-187 (236)
60 PRK05211 consensus 98.0 5.5E-05 1.4E-09 56.6 8.9 171 39-236 55-242 (248)
61 PRK00830 consensus 98.0 6.1E-05 1.5E-09 56.3 9.0 162 47-236 76-267 (273)
62 PRK13587 1-(5-phosphoribosyl)- 98.0 1.9E-05 4.8E-10 60.0 6.1 149 47-224 74-229 (234)
63 PRK01659 consensus 97.9 6.6E-05 1.7E-09 56.0 7.8 169 40-236 65-247 (252)
64 cd03332 LMO_FMN L-Lactate 2-mo 97.9 9.3E-05 2.4E-09 54.9 8.5 156 47-227 137-343 (383)
65 PRK00748 1-(5-phosphoribosyl)- 97.9 5.4E-05 1.4E-09 56.6 7.2 156 47-231 71-236 (241)
66 PRK02747 consensus 97.9 0.00017 4.3E-09 52.9 9.6 169 40-236 65-250 (257)
67 pfam00977 His_biosynth Histidi 97.9 4.7E-05 1.2E-09 57.1 6.7 146 47-222 71-226 (229)
68 cd02811 IDI-2_FMN Isopentenyl- 97.9 4.7E-05 1.2E-09 57.1 6.6 152 53-220 123-288 (326)
69 TIGR01036 pyrD_sub2 dihydrooro 97.9 9.8E-05 2.5E-09 54.7 8.2 158 41-212 138-327 (370)
70 cd04737 LOX_like_FMN L-Lactate 97.9 0.00016 4.2E-09 53.1 9.2 157 46-227 123-311 (351)
71 PRK05437 isopentenyl pyrophosp 97.9 0.00021 5.5E-09 52.2 9.6 157 47-218 120-292 (351)
72 PRK02145 consensus 97.8 0.00011 2.8E-09 54.4 7.9 170 39-236 65-251 (257)
73 cd04732 HisA HisA. Phosphorib 97.8 7.3E-05 1.9E-09 55.6 6.9 147 49-223 73-226 (234)
74 PRK04281 consensus 97.8 0.00015 3.7E-09 53.4 8.1 169 40-236 65-248 (254)
75 pfam03060 NPD 2-nitropropane d 97.8 0.00089 2.3E-08 47.7 12.0 183 1-223 19-228 (330)
76 cd04736 MDH_FMN Mandelate dehy 97.8 0.0003 7.7E-09 51.1 9.4 155 47-227 115-324 (361)
77 TIGR03572 WbuZ glycosyl amidat 97.8 0.00031 7.9E-09 51.0 9.4 151 39-217 64-228 (232)
78 PRK01033 imidazole glycerol ph 97.8 6.2E-05 1.6E-09 56.2 5.8 142 49-218 74-228 (253)
79 TIGR03151 enACPred_II putative 97.8 0.00088 2.2E-08 47.7 11.6 176 1-221 19-195 (307)
80 COG0214 SNZ1 Pyridoxine biosyn 97.8 5.6E-05 1.4E-09 56.5 5.5 153 64-226 31-249 (296)
81 TIGR01919 hisA-trpF bifunction 97.7 0.00044 1.1E-08 49.9 8.9 129 90-230 102-242 (246)
82 PRK11197 lldD L-lactate dehydr 97.7 0.00077 2E-08 48.1 9.9 156 47-227 121-335 (381)
83 cd04727 pdxS PdxS is a subunit 97.6 0.00011 2.8E-09 54.4 5.2 149 64-222 19-231 (283)
84 PRK05211 consensus 97.6 0.00012 3.1E-09 54.1 5.4 94 133-236 20-114 (248)
85 PRK04180 pyridoxine biosynthes 97.6 9.7E-05 2.5E-09 54.8 4.9 149 64-222 28-240 (293)
86 PRK13586 1-(5-phosphoribosyl)- 97.6 0.0003 7.7E-09 51.1 7.4 144 49-222 72-223 (231)
87 PRK01130 N-acetylmannosamine-6 97.5 0.0037 9.4E-08 43.1 11.6 129 62-226 78-212 (222)
88 KOG1606 consensus 97.5 0.00025 6.4E-09 51.7 5.3 156 65-230 33-252 (296)
89 PRK13597 imidazole glycerol ph 97.4 0.00035 8.8E-09 50.7 5.5 91 135-235 32-123 (252)
90 COG0107 HisF Imidazoleglycerol 97.4 0.00033 8.3E-09 50.9 5.2 176 15-217 41-230 (256)
91 PRK13129 consensus 97.4 0.005 1.3E-07 42.1 10.9 171 44-219 14-238 (267)
92 cd00381 IMPDH IMPDH: The catal 97.4 0.014 3.7E-07 38.7 13.2 135 50-218 84-228 (325)
93 PRK01033 imidazole glycerol ph 97.3 0.00044 1.1E-08 49.9 5.3 93 133-235 29-122 (253)
94 TIGR03572 WbuZ glycosyl amidat 97.3 0.00056 1.4E-08 49.1 5.8 106 120-236 17-123 (232)
95 pfam01645 Glu_synthase Conserv 97.3 0.00039 1E-08 50.3 4.8 158 50-225 115-311 (367)
96 PRK02747 consensus 97.3 0.00046 1.2E-08 49.8 5.1 92 135-236 31-123 (257)
97 PRK13586 1-(5-phosphoribosyl)- 97.3 0.00076 1.9E-08 48.2 6.2 105 120-235 14-120 (231)
98 pfam04131 NanE Putative N-acet 97.3 0.0043 1.1E-07 42.6 10.0 126 62-226 54-182 (192)
99 PRK00748 1-(5-phosphoribosyl)- 97.3 0.0008 2E-08 48.0 6.2 91 135-235 30-121 (241)
100 PRK13585 1-(5-phosphoribosyl)- 97.3 0.00085 2.2E-08 47.8 6.3 104 121-234 17-122 (240)
101 PRK02145 consensus 97.3 0.00048 1.2E-08 49.6 5.0 92 135-236 32-124 (257)
102 cd02808 GltS_FMN Glutamate syn 97.3 0.00034 8.7E-09 50.7 4.1 159 48-224 125-322 (392)
103 PRK02621 consensus 97.3 0.00047 1.2E-08 49.7 4.9 92 135-236 31-123 (254)
104 TIGR01304 IMP_DH_rel_2 IMP deh 97.3 0.0014 3.5E-08 46.2 7.2 134 44-216 82-218 (376)
105 PRK03220 consensus 97.3 0.00064 1.6E-08 48.7 5.4 92 135-236 32-124 (257)
106 CHL00200 trpA tryptophan synth 97.3 0.014 3.7E-07 38.7 12.3 168 47-219 14-234 (263)
107 PRK13135 consensus 97.2 0.011 2.8E-07 39.6 11.5 170 46-220 15-236 (267)
108 PRK13118 consensus 97.2 0.0093 2.4E-07 40.1 11.2 170 44-218 12-235 (269)
109 PRK02083 imidazole glycerol ph 97.2 0.00048 1.2E-08 49.6 4.5 93 134-236 30-123 (253)
110 cd04731 HisF The cyclase subun 97.2 0.00051 1.3E-08 49.4 4.3 92 134-235 27-119 (243)
111 PRK00830 consensus 97.2 0.00031 7.9E-09 51.0 3.2 93 134-236 34-127 (273)
112 PRK13121 consensus 97.2 0.012 3E-07 39.4 11.2 169 45-218 13-235 (265)
113 KOG0134 consensus 97.2 0.0039 1E-07 42.9 8.7 177 53-232 167-364 (400)
114 PRK04281 consensus 97.2 0.00062 1.6E-08 48.8 4.5 92 135-236 31-123 (254)
115 pfam00478 IMPDH IMP dehydrogen 97.1 0.0057 1.4E-07 41.7 9.1 129 55-218 218-357 (467)
116 PRK13111 trpA tryptophan synth 97.1 0.013 3.2E-07 39.2 10.9 166 49-219 10-227 (256)
117 PTZ00314 inosine-5'-monophosph 97.1 0.0094 2.4E-07 40.1 10.2 135 50-218 228-372 (499)
118 PRK01659 consensus 97.1 0.00077 2E-08 48.1 4.5 92 135-236 31-123 (252)
119 PRK05567 inositol-5'-monophosp 97.1 0.0069 1.8E-07 41.1 9.4 131 54-218 222-362 (486)
120 PRK05283 deoxyribose-phosphate 97.1 0.003 7.7E-08 43.7 7.5 145 53-225 77-227 (258)
121 PRK13134 consensus 97.1 0.013 3.2E-07 39.2 10.6 174 40-218 10-236 (257)
122 PRK13139 consensus 97.1 0.014 3.5E-07 38.9 10.7 169 46-219 14-234 (254)
123 PRK13112 consensus 97.1 0.015 3.8E-07 38.6 10.8 172 42-218 11-236 (279)
124 TIGR00007 TIGR00007 phosphorib 97.0 0.0014 3.6E-08 46.2 5.4 91 134-234 28-120 (241)
125 PRK13119 consensus 97.0 0.018 4.6E-07 38.0 10.9 169 45-218 12-233 (261)
126 PRK13140 consensus 97.0 0.016 4E-07 38.5 10.6 168 49-220 15-235 (257)
127 PRK13127 consensus 97.0 0.013 3.2E-07 39.2 10.0 167 48-219 11-230 (262)
128 PRK13124 consensus 97.0 0.015 3.9E-07 38.6 10.2 165 50-219 11-226 (257)
129 COG0159 TrpA Tryptophan syntha 97.0 0.024 6E-07 37.2 11.2 167 46-218 15-235 (265)
130 PRK13115 consensus 97.0 0.023 6E-07 37.2 11.2 173 40-218 15-240 (269)
131 TIGR01163 rpe ribulose-phospha 97.0 0.0075 1.9E-07 40.8 8.6 77 50-156 2-90 (216)
132 PRK13117 consensus 97.0 0.024 6.1E-07 37.1 11.2 169 46-219 15-237 (268)
133 pfam00290 Trp_syntA Tryptophan 97.0 0.02 5E-07 37.8 10.7 168 47-219 8-228 (258)
134 PRK13116 consensus 96.9 0.048 1.2E-06 34.9 14.3 168 46-218 15-237 (278)
135 cd03315 MLE_like Muconate lact 96.9 0.025 6.3E-07 37.0 10.6 144 39-217 66-211 (265)
136 PRK13114 consensus 96.9 0.023 5.9E-07 37.2 10.4 170 46-220 10-233 (266)
137 PRK00507 deoxyribose-phosphate 96.8 0.026 6.6E-07 36.9 10.4 132 56-212 70-204 (221)
138 PRK13138 consensus 96.8 0.019 4.9E-07 37.8 9.7 167 47-218 11-233 (264)
139 PRK13113 consensus 96.8 0.025 6.3E-07 37.0 10.2 168 46-218 15-235 (263)
140 PRK13122 consensus 96.8 0.027 6.9E-07 36.7 10.3 161 51-218 6-216 (242)
141 PRK13136 consensus 96.8 0.04 1E-06 35.5 11.1 167 46-218 10-228 (253)
142 cd04724 Tryptophan_synthase_al 96.8 0.026 6.7E-07 36.8 10.1 43 176-219 176-218 (242)
143 PRK06843 inositol-5-monophosph 96.8 0.063 1.6E-06 34.0 13.3 129 56-218 149-287 (404)
144 cd00945 Aldolase_Class_I Class 96.8 0.017 4.3E-07 38.2 9.1 141 47-213 48-198 (201)
145 PRK13133 consensus 96.8 0.033 8.3E-07 36.1 10.5 170 45-218 12-241 (267)
146 PRK12330 oxaloacetate decarbox 96.8 0.064 1.6E-06 33.9 12.5 220 57-314 93-327 (499)
147 cd03319 L-Ala-DL-Glu_epimerase 96.8 0.048 1.2E-06 34.9 11.3 135 47-217 123-259 (316)
148 PRK07807 inositol-5-monophosph 96.7 0.017 4.3E-07 38.2 8.9 130 55-218 222-361 (479)
149 PRK13123 consensus 96.7 0.022 5.7E-07 37.3 9.5 166 46-218 13-230 (256)
150 pfam00977 His_biosynth Histidi 96.7 0.0031 7.8E-08 43.7 4.7 92 134-235 29-121 (229)
151 COG0107 HisF Imidazoleglycerol 96.6 0.076 1.9E-06 33.4 11.6 97 129-235 25-122 (256)
152 PRK06843 inositol-5-monophosph 96.6 0.011 2.8E-07 39.6 6.9 70 136-218 154-224 (404)
153 cd04723 HisA_HisF Phosphoribos 96.5 0.014 3.5E-07 38.9 7.3 160 39-227 68-229 (233)
154 cd00381 IMPDH IMPDH: The catal 96.5 0.013 3.3E-07 39.1 7.1 92 105-218 73-165 (325)
155 cd04723 HisA_HisF Phosphoribos 96.5 0.0045 1.2E-07 42.4 4.7 89 134-233 35-124 (233)
156 cd04732 HisA HisA. Phosphorib 96.5 0.0066 1.7E-07 41.2 5.5 91 135-235 30-121 (234)
157 cd00959 DeoC 2-deoxyribose-5-p 96.5 0.061 1.6E-06 34.1 10.4 130 57-211 66-198 (203)
158 PRK08005 ribulose-phosphate 3- 96.5 0.024 6E-07 37.1 8.3 131 50-216 3-135 (210)
159 PRK13137 consensus 96.4 0.059 1.5E-06 34.2 9.9 168 45-218 22-242 (266)
160 TIGR00735 hisF imidazoleglycer 96.4 0.0034 8.6E-08 43.4 3.6 191 15-233 53-304 (312)
161 PRK08645 bifunctional homocyst 96.4 0.089 2.3E-06 32.9 10.8 126 8-151 127-268 (608)
162 COG3010 NanE Putative N-acetyl 96.4 0.06 1.5E-06 34.2 9.9 48 174-224 168-216 (229)
163 COG0274 DeoC Deoxyribose-phosp 96.4 0.043 1.1E-06 35.3 9.0 130 55-209 71-205 (228)
164 cd03325 D-galactonate_dehydrat 96.3 0.11 2.8E-06 32.3 10.9 150 39-216 103-257 (352)
165 PRK07226 fructose-bisphosphate 96.3 0.12 3E-06 32.0 12.1 148 47-224 73-239 (266)
166 PRK04128 1-(5-phosphoribosyl)- 96.3 0.013 3.4E-07 39.0 6.1 152 39-230 63-225 (228)
167 PRK08227 aldolase; Validated 96.3 0.063 1.6E-06 34.0 9.3 148 46-224 100-261 (291)
168 PRK13131 consensus 96.2 0.13 3.3E-06 31.7 11.0 169 46-219 9-230 (257)
169 PRK13587 1-(5-phosphoribosyl)- 96.2 0.012 3.1E-07 39.3 5.4 88 138-235 35-124 (234)
170 cd00958 DhnA Class I fructose- 96.2 0.14 3.5E-06 31.5 11.3 149 46-224 54-222 (235)
171 TIGR02708 L_lactate_ox L-lacta 96.2 0.011 2.9E-07 39.5 5.2 155 48-227 133-319 (368)
172 PRK13132 consensus 96.2 0.081 2.1E-06 33.2 9.6 166 48-220 11-227 (246)
173 cd02809 alpha_hydroxyacid_oxid 96.2 0.016 4E-07 38.5 5.9 88 114-217 113-201 (299)
174 pfam00218 IGPS Indole-3-glycer 96.2 0.062 1.6E-06 34.1 8.9 148 53-228 92-250 (254)
175 TIGR01108 oadA oxaloacetate de 96.1 0.088 2.2E-06 33.0 9.5 109 57-193 87-199 (616)
176 COG2070 Dioxygenases related t 96.0 0.043 1.1E-06 35.2 7.6 97 106-219 118-216 (336)
177 PRK07107 inositol-5-monophosph 96.0 0.024 6.2E-07 37.0 6.3 122 64-218 245-383 (497)
178 PRK04128 1-(5-phosphoribosyl)- 96.0 0.021 5.3E-07 37.6 5.9 103 120-234 15-119 (228)
179 PRK07028 bifunctional hexulose 96.0 0.14 3.5E-06 31.5 10.1 174 23-236 36-213 (429)
180 pfam00478 IMPDH IMP dehydrogen 96.0 0.0086 2.2E-07 40.4 3.9 68 135-218 223-294 (467)
181 pfam01791 DeoC DeoC/LacD famil 96.0 0.028 7.2E-07 36.6 6.3 138 64-221 78-230 (231)
182 COG0106 HisA Phosphoribosylfor 95.9 0.034 8.8E-07 35.9 6.8 90 135-234 32-122 (241)
183 COG0036 Rpe Pentose-5-phosphat 95.9 0.12 3.1E-06 31.9 9.5 132 48-216 4-138 (220)
184 cd03316 MR_like Mandelate race 95.9 0.11 2.7E-06 32.3 9.2 138 53-221 134-275 (357)
185 cd04722 TIM_phosphate_binding 95.9 0.14 3.7E-06 31.4 9.7 133 60-218 12-145 (200)
186 pfam00834 Ribul_P_3_epim Ribul 95.9 0.039 9.9E-07 35.6 6.8 86 51-157 3-90 (201)
187 PRK00278 trpC indole-3-glycero 95.8 0.021 5.4E-07 37.5 5.2 156 53-236 94-260 (261)
188 pfam01070 FMN_dh FMN-dependent 95.8 0.025 6.5E-07 36.9 5.6 93 112-216 104-197 (301)
189 KOG0538 consensus 95.8 0.044 1.1E-06 35.1 6.8 149 50-218 123-309 (363)
190 PRK05581 ribulose-phosphate 3- 95.8 0.083 2.1E-06 33.1 8.2 131 50-216 6-138 (220)
191 TIGR02151 IPP_isom_2 isopenten 95.7 0.011 2.9E-07 39.5 3.6 147 57-218 136-301 (349)
192 cd02812 PcrB_like PcrB_like pr 95.7 0.016 4.2E-07 38.3 4.4 83 133-229 134-217 (219)
193 PRK12595 bifunctional 3-deoxy- 95.7 0.025 6.5E-07 36.9 5.3 114 94-224 208-328 (360)
194 cd00429 RPE Ribulose-5-phospha 95.7 0.065 1.7E-06 33.9 7.3 131 50-216 2-134 (211)
195 PRK05096 guanosine 5'-monophos 95.6 0.23 5.9E-06 29.9 13.6 136 48-218 96-244 (347)
196 PRK08673 3-deoxy-7-phosphohept 95.6 0.04 1E-06 35.5 6.0 163 43-224 129-303 (335)
197 PTZ00314 inosine-5'-monophosph 95.6 0.015 3.7E-07 38.7 3.6 72 135-219 238-310 (499)
198 COG4948 L-alanine-DL-glutamate 95.6 0.23 5.8E-06 29.9 9.7 122 58-215 143-268 (372)
199 cd03318 MLE Muconate Lactonizi 95.5 0.24 6E-06 29.8 9.7 140 46-221 130-274 (365)
200 PRK05567 inositol-5'-monophosp 95.5 0.016 4.2E-07 38.3 3.7 71 135-218 228-299 (486)
201 COG1304 idi Isopentenyl diphos 95.5 0.0075 1.9E-07 40.8 1.9 67 142-218 234-304 (360)
202 PRK00043 thiE thiamine-phospha 95.5 0.032 8.1E-07 36.2 5.1 85 140-231 116-201 (210)
203 cd04733 OYE_like_2_FMN Old yel 95.4 0.071 1.8E-06 33.6 6.6 89 135-224 150-264 (338)
204 PRK13125 trpA tryptophan synth 95.4 0.15 3.8E-06 31.2 8.3 43 177-219 177-220 (247)
205 TIGR03128 RuMP_HxlA 3-hexulose 95.3 0.26 6.7E-06 29.4 9.4 141 47-224 52-194 (206)
206 pfam03437 BtpA BtpA family. Th 95.3 0.29 7.4E-06 29.1 11.1 147 47-218 80-229 (254)
207 PRK11197 lldD L-lactate dehydr 95.3 0.091 2.3E-06 32.8 6.9 166 53-224 82-285 (381)
208 PRK01222 N-(5'-phosphoribosyl) 95.3 0.18 4.7E-06 30.6 8.4 30 72-111 22-51 (212)
209 PRK08883 ribulose-phosphate 3- 95.2 0.11 2.7E-06 32.3 7.1 129 51-215 3-134 (220)
210 PRK09722 allulose-6-phosphate 95.2 0.16 4.1E-06 31.0 8.0 132 50-217 3-136 (227)
211 TIGR01302 IMP_dehydrog inosine 95.1 0.021 5.4E-07 37.5 3.2 129 55-217 234-372 (476)
212 COG2513 PrpB PEP phosphonomuta 95.0 0.067 1.7E-06 33.8 5.5 180 39-234 9-202 (289)
213 cd04743 NPD_PKS 2-Nitropropane 94.9 0.27 7E-06 29.3 8.5 135 46-218 54-204 (320)
214 PRK05458 guanosine 5'-monophos 94.9 0.38 9.8E-06 28.2 12.4 129 56-218 93-232 (326)
215 PRK13523 NADPH dehydrogenase N 94.8 0.082 2.1E-06 33.2 5.6 84 136-221 144-252 (337)
216 COG0134 TrpC Indole-3-glycerol 94.8 0.064 1.6E-06 33.9 5.0 110 100-232 141-252 (254)
217 PRK04169 geranylgeranylglycery 94.8 0.069 1.8E-06 33.7 5.2 54 173-226 170-224 (229)
218 pfam09370 TIM-br_sig_trns TIM- 94.7 0.29 7.4E-06 29.1 8.2 154 46-217 80-247 (268)
219 cd00331 IGPS Indole-3-glycerol 94.7 0.056 1.4E-06 34.4 4.5 147 53-227 55-212 (217)
220 cd03332 LMO_FMN L-Lactate 2-mo 94.6 0.12 3.1E-06 31.9 6.1 165 53-224 97-293 (383)
221 cd04734 OYE_like_3_FMN Old yel 94.6 0.14 3.6E-06 31.4 6.4 89 136-225 143-258 (343)
222 PRK07807 inositol-5-monophosph 94.5 0.041 1.1E-06 35.4 3.4 68 135-218 227-298 (479)
223 cd03322 rpsA The starvation se 94.4 0.48 1.2E-05 27.5 9.8 148 39-230 106-258 (361)
224 PRK05458 guanosine 5'-monophos 94.4 0.14 3.6E-06 31.5 6.0 95 100-218 70-170 (326)
225 PRK13120 consensus 94.4 0.49 1.2E-05 27.5 16.1 167 48-219 21-240 (285)
226 cd02922 FCB2_FMN Flavocytochro 94.3 0.16 4.1E-06 31.0 6.1 151 53-224 76-253 (344)
227 PRK13957 indole-3-glycerol-pho 94.1 0.11 2.7E-06 32.3 4.8 152 53-232 85-246 (247)
228 cd04728 ThiG Thiazole synthase 94.1 0.24 6.2E-06 29.7 6.7 134 55-219 71-207 (248)
229 cd03327 MR_like_2 Mandelate ra 94.0 0.57 1.5E-05 26.9 10.5 163 39-231 99-267 (341)
230 cd03321 mandelate_racemase Man 94.0 0.58 1.5E-05 26.9 11.0 143 40-216 123-267 (355)
231 PRK08745 ribulose-phosphate 3- 94.0 0.41 1E-05 28.0 7.7 132 50-217 6-140 (223)
232 PRK00208 thiG thiazole synthas 94.0 0.22 5.6E-06 30.0 6.3 134 55-219 72-208 (256)
233 pfam05690 ThiG Thiazole biosyn 94.0 0.26 6.7E-06 29.4 6.7 134 55-219 70-206 (246)
234 PRK09427 bifunctional indole-3 93.9 0.14 3.6E-06 31.5 5.2 114 100-236 145-259 (459)
235 PTZ00170 D-ribulose-5-phosphat 93.9 0.6 1.5E-05 26.8 8.7 148 47-229 63-211 (224)
236 TIGR00693 thiE thiamine-phosph 93.7 0.16 4.2E-06 30.9 5.2 93 122-227 105-205 (210)
237 CHL00162 thiG thiamin biosynth 93.7 0.33 8.3E-06 28.7 6.7 133 56-219 80-221 (267)
238 PRK07535 methyltetrahydrofolat 93.6 0.19 4.9E-06 30.4 5.5 57 54-122 19-75 (268)
239 cd02930 DCR_FMN 2,4-dienoyl-Co 93.6 0.32 8.2E-06 28.8 6.6 88 135-222 138-250 (353)
240 PRK05096 guanosine 5'-monophos 93.5 0.39 9.9E-06 28.2 6.9 97 101-218 81-181 (347)
241 PRK11320 prpB 2-methylisocitra 93.5 0.69 1.8E-05 26.3 8.1 170 37-234 6-202 (292)
242 PRK12581 oxaloacetate decarbox 93.4 0.72 1.8E-05 26.2 14.1 225 57-314 101-336 (468)
243 PRK13398 3-deoxy-7-phosphohept 93.4 0.24 6.2E-06 29.7 5.7 161 45-224 65-237 (266)
244 COG0069 GltB Glutamate synthas 93.4 0.27 6.9E-06 29.4 5.9 158 47-224 213-411 (485)
245 cd03328 MR_like_3 Mandelate ra 93.4 0.73 1.9E-05 26.2 11.1 156 39-230 117-279 (352)
246 PRK13396 3-deoxy-7-phosphohept 93.3 0.26 6.6E-06 29.5 5.7 163 43-224 137-312 (352)
247 cd03329 MR_like_4 Mandelate ra 93.3 0.75 1.9E-05 26.1 9.9 126 57-217 142-272 (368)
248 PRK07107 inositol-5-monophosph 93.2 0.14 3.6E-06 31.4 4.3 71 136-218 243-314 (497)
249 PRK03512 thiamine-phosphate py 93.2 0.27 6.9E-06 29.3 5.7 90 137-233 113-203 (211)
250 PRK11320 prpB 2-methylisocitra 93.2 0.33 8.4E-06 28.7 6.1 190 3-214 23-232 (292)
251 cd04737 LOX_like_FMN L-Lactate 93.1 0.3 7.8E-06 29.0 5.8 169 54-233 85-273 (351)
252 PRK09282 pyruvate carboxylase 93.1 0.8 2E-05 25.9 12.4 50 132-192 153-202 (580)
253 cd00564 TMP_TenI Thiamine mono 93.0 0.22 5.7E-06 29.9 5.0 85 138-229 106-191 (196)
254 cd00423 Pterin_binding Pterin 93.0 0.3 7.8E-06 29.0 5.6 64 57-125 21-85 (258)
255 PRK04147 N-acetylneuraminate l 93.0 0.84 2.1E-05 25.7 13.4 188 8-238 25-228 (294)
256 PRK09485 mmuM homocysteine met 92.9 0.85 2.2E-05 25.7 8.0 42 52-93 38-80 (308)
257 cd00952 CHBPH_aldolase Trans-o 92.9 0.55 1.4E-05 27.0 6.9 189 8-238 30-235 (309)
258 cd00740 MeTr MeTr subgroup of 92.9 0.3 7.7E-06 29.0 5.5 139 54-226 20-168 (252)
259 PRK06857 consensus 92.9 0.26 6.7E-06 29.4 5.2 40 46-85 10-49 (209)
260 TIGR01496 DHPS dihydropteroate 92.8 0.48 1.2E-05 27.5 6.5 79 57-151 20-105 (268)
261 TIGR01302 IMP_dehydrog inosine 92.8 0.47 1.2E-05 27.6 6.4 70 136-218 240-310 (476)
262 TIGR01949 AroFGH_arch predicte 92.8 0.61 1.5E-05 26.8 7.0 144 48-222 71-234 (259)
263 cd00405 PRAI Phosphoribosylant 92.8 0.88 2.2E-05 25.6 7.8 178 3-224 5-189 (203)
264 PRK08649 inositol-5-monophosph 92.8 0.094 2.4E-06 32.7 2.8 78 133-218 193-286 (368)
265 PRK08649 inositol-5-monophosph 92.7 0.89 2.3E-05 25.5 8.5 75 135-218 141-216 (368)
266 PRK13397 3-deoxy-7-phosphohept 92.6 0.44 1.1E-05 27.8 6.0 23 134-156 136-158 (250)
267 PRK06015 keto-hydroxyglutarate 92.5 0.32 8.2E-06 28.8 5.3 40 46-85 13-52 (212)
268 cd02931 ER_like_FMN Enoate red 92.4 0.51 1.3E-05 27.3 6.2 88 135-222 151-278 (382)
269 pfam00682 HMGL-like HMGL-like. 92.4 0.89 2.3E-05 25.5 7.4 121 57-193 64-186 (237)
270 COG2513 PrpB PEP phosphonomuta 92.4 0.2 5.1E-06 30.3 4.1 151 44-217 75-235 (289)
271 pfam01188 MR_MLE Mandelate rac 92.3 0.6 1.5E-05 26.8 6.4 94 59-187 1-96 (98)
272 KOG2550 consensus 92.3 0.16 4.2E-06 31.0 3.6 68 138-218 254-322 (503)
273 PRK11840 bifunctional sulfur c 92.3 0.65 1.7E-05 26.5 6.6 73 137-219 209-282 (327)
274 PRK07695 transcriptional regul 92.1 0.31 7.8E-06 29.0 4.7 84 139-230 107-191 (202)
275 PRK09490 metH B12-dependent me 92.0 1.1 2.8E-05 24.9 7.8 26 101-126 255-280 (1229)
276 COG0329 DapA Dihydrodipicolina 91.9 1 2.7E-05 25.0 7.3 191 7-237 25-229 (299)
277 PRK13802 bifunctional indole-3 91.9 0.24 6.1E-06 29.7 4.0 143 54-224 95-248 (695)
278 PRK11613 folP dihydropteroate 91.9 0.54 1.4E-05 27.1 5.8 64 57-125 35-99 (282)
279 cd02932 OYE_YqiM_FMN Old yello 91.8 0.6 1.5E-05 26.8 6.0 85 135-219 155-264 (336)
280 pfam00809 Pterin_bind Pterin b 91.8 0.94 2.4E-05 25.4 7.0 79 57-152 16-95 (208)
281 pfam01884 PcrB PcrB family. Th 91.8 0.43 1.1E-05 27.9 5.2 72 146-229 152-224 (231)
282 PRK07534 methionine synthase I 91.8 1.1 2.9E-05 24.7 10.9 98 56-153 41-150 (335)
283 PRK07565 dihydroorotate dehydr 91.7 0.81 2.1E-05 25.8 6.5 194 102-308 87-316 (333)
284 PRK07455 keto-hydroxyglutarate 91.5 0.5 1.3E-05 27.4 5.3 148 46-225 11-190 (210)
285 cd00377 ICL_PEPM Members of th 91.5 1.1 2.8E-05 24.9 7.0 156 65-232 21-194 (243)
286 COG2876 AroA 3-deoxy-D-arabino 91.3 0.48 1.2E-05 27.5 5.0 162 42-224 80-255 (286)
287 cd04730 NPD_like 2-Nitropropan 91.2 0.84 2.2E-05 25.7 6.1 91 100-215 37-128 (236)
288 pfam01680 SOR_SNZ SOR/SNZ fami 91.0 0.081 2.1E-06 33.2 0.8 112 65-210 27-140 (209)
289 COG1646 Predicted phosphate-bi 91.0 0.61 1.5E-05 26.8 5.3 60 171-233 177-237 (240)
290 PRK02227 hypothetical protein; 90.9 0.69 1.8E-05 26.3 5.5 73 67-153 14-86 (239)
291 PRK09140 2-dehydro-3-deoxy-6-p 90.9 0.57 1.5E-05 26.9 5.1 157 46-221 8-184 (206)
292 pfam04131 NanE Putative N-acet 90.8 0.83 2.1E-05 25.7 5.8 88 107-211 23-114 (192)
293 COG0352 ThiE Thiamine monophos 90.8 0.54 1.4E-05 27.2 4.8 97 122-231 104-201 (211)
294 PRK03620 5-dehydro-4-deoxygluc 90.6 1.5 3.7E-05 24.0 11.1 191 7-237 22-225 (296)
295 PRK12457 2-dehydro-3-deoxyphos 90.6 0.73 1.9E-05 26.2 5.4 113 93-223 112-242 (281)
296 TIGR00735 hisF imidazoleglycer 90.5 0.42 1.1E-05 28.0 4.1 90 133-232 41-145 (312)
297 COG5016 Pyruvate/oxaloacetate 90.4 1.5 3.9E-05 23.8 13.4 25 99-123 182-206 (472)
298 COG0434 SgcQ Predicted TIM-bar 90.4 0.47 1.2E-05 27.6 4.3 145 45-220 83-236 (263)
299 TIGR02090 LEU1_arch isopropylm 90.2 1.5 4E-05 23.8 6.8 135 46-213 124-293 (371)
300 KOG4175 consensus 90.2 1.6 4.1E-05 23.7 10.4 112 38-153 7-129 (268)
301 cd00739 DHPS DHPS subgroup of 89.9 1.1 2.7E-05 25.0 5.7 80 57-152 21-101 (257)
302 PRK11858 aksA trans-homoaconit 89.8 1.6 4.1E-05 23.6 6.7 54 57-123 142-195 (378)
303 TIGR00078 nadC nicotinate-nucl 89.8 0.35 9E-06 28.5 3.2 107 95-225 158-270 (276)
304 TIGR01108 oadA oxaloacetate de 89.5 0.92 2.4E-05 25.4 5.2 73 60-151 150-223 (616)
305 cd00950 DHDPS Dihydrodipicolin 89.4 1.3 3.3E-05 24.3 5.9 236 7-297 21-269 (284)
306 PRK09282 pyruvate carboxylase 89.2 0.99 2.5E-05 25.2 5.2 77 57-152 152-228 (580)
307 PRK08104 consensus 89.2 0.72 1.8E-05 26.2 4.4 131 46-208 13-174 (212)
308 cd00003 PNPsynthase Pyridoxine 89.2 0.21 5.4E-06 30.1 1.8 120 90-224 98-219 (234)
309 COG2022 ThiG Uncharacterized e 89.1 0.52 1.3E-05 27.2 3.7 134 55-219 78-214 (262)
310 cd03326 MR_like_1 Mandelate ra 89.1 1.9 4.8E-05 23.1 9.9 119 56-208 158-276 (385)
311 TIGR01064 pyruv_kin pyruvate k 89.1 0.53 1.4E-05 27.2 3.7 45 174-221 221-273 (513)
312 pfam03740 PdxJ Pyridoxal phosp 89.0 0.19 4.8E-06 30.5 1.4 181 11-224 29-222 (239)
313 PRK02615 thiamine-phosphate py 89.0 0.95 2.4E-05 25.3 4.9 90 50-153 81-174 (345)
314 PRK08782 consensus 89.0 0.37 9.6E-06 28.3 2.9 139 46-216 15-184 (219)
315 COG4981 Enoyl reductase domain 89.0 0.81 2.1E-05 25.8 4.6 38 185-222 210-259 (717)
316 PRK00311 panB 3-methyl-2-oxobu 88.9 1.9 4.8E-05 23.1 6.5 151 4-195 24-205 (266)
317 pfam04481 DUF561 Protein of un 88.9 1.4 3.6E-05 24.0 5.8 152 47-218 61-216 (243)
318 PRK12331 oxaloacetate decarbox 88.9 2 5E-05 23.0 14.9 21 133-153 153-173 (463)
319 PRK05265 pyridoxine 5'-phospha 88.7 0.24 6.1E-06 29.8 1.7 54 92-156 103-156 (240)
320 cd03317 NAAAR N-acylamino acid 88.7 2 5.1E-05 22.9 10.4 147 39-224 117-266 (354)
321 PRK07094 biotin synthase; Prov 88.6 1.6 4.2E-05 23.6 6.0 176 12-217 28-214 (323)
322 cd00408 DHDPS-like Dihydrodipi 88.3 2.1 5.4E-05 22.7 7.5 188 8-237 19-221 (281)
323 cd04736 MDH_FMN Mandelate dehy 88.3 0.76 1.9E-05 26.0 4.1 148 75-225 97-277 (361)
324 COG1830 FbaB DhnA-type fructos 88.2 1.6 4.2E-05 23.6 5.8 149 46-224 76-245 (265)
325 PRK13958 N-(5'-phosphoribosyl) 88.2 2.2 5.5E-05 22.7 7.7 81 52-156 3-84 (207)
326 PRK06552 keto-hydroxyglutarate 88.0 2.2 5.7E-05 22.6 12.3 154 46-219 11-186 (209)
327 TIGR00343 TIGR00343 pyridoxine 88.0 0.76 1.9E-05 26.0 3.9 132 85-222 40-240 (298)
328 TIGR01858 tag_bisphos_ald clas 87.8 2 5E-05 23.0 6.0 92 132-242 154-254 (282)
329 PRK02412 aroD 3-dehydroquinate 87.8 2.3 5.8E-05 22.5 7.2 98 46-154 13-116 (253)
330 pfam02581 TMP-TENI Thiamine mo 87.8 0.87 2.2E-05 25.6 4.1 71 140-218 108-179 (180)
331 PTZ00066 pyruvate kinase; Prov 87.7 0.53 1.3E-05 27.2 3.0 41 207-247 271-332 (513)
332 TIGR00259 TIGR00259 conserved 87.7 0.8 2E-05 25.9 3.9 146 46-221 81-236 (261)
333 PRK06512 thiamine-phosphate py 87.6 0.99 2.5E-05 25.2 4.3 152 51-226 43-202 (221)
334 PRK05718 keto-hydroxyglutarate 87.6 1.5 3.9E-05 23.8 5.2 139 46-216 13-182 (212)
335 PRK04302 triosephosphate isome 87.5 1.2 3.1E-05 24.5 4.8 48 177-224 162-210 (223)
336 cd00452 KDPG_aldolase KDPG and 87.3 1.2 3E-05 24.7 4.5 38 47-84 3-40 (190)
337 pfam01487 DHquinase_I Type I 3 87.3 1.7 4.2E-05 23.5 5.3 92 52-156 2-96 (222)
338 PRK13307 bifunctional formalde 87.3 2.4 6.2E-05 22.3 9.8 165 47-234 170-376 (392)
339 PRK13352 thiamine biosynthesis 87.2 1.2 3.1E-05 24.6 4.5 80 57-156 75-166 (433)
340 PRK05198 2-dehydro-3-deoxyphos 87.1 2.3 6E-05 22.4 6.0 111 94-224 107-235 (264)
341 PRK08904 consensus 86.8 1.1 2.7E-05 25.0 4.1 132 46-209 8-170 (207)
342 TIGR01361 DAHP_synth_Bsub phos 86.7 1.7 4.3E-05 23.5 5.1 165 42-225 60-237 (262)
343 pfam01081 Aldolase KDPG and KH 86.6 1.1 2.8E-05 24.8 4.1 148 46-225 6-185 (196)
344 pfam03599 CdhD CO dehydrogenas 86.5 2.7 6.8E-05 22.0 11.1 173 50-239 72-261 (384)
345 COG0119 LeuA Isopropylmalate/h 86.5 2.7 6.8E-05 22.0 8.1 77 54-151 140-220 (409)
346 TIGR03249 KdgD 5-dehydro-4-deo 86.4 2.7 6.8E-05 22.0 10.5 190 8-237 27-229 (296)
347 pfam00697 PRAI N-(5'phosphorib 86.1 2.8 7.1E-05 21.9 6.9 172 3-225 5-183 (195)
348 TIGR01768 GGGP-family geranylg 86.0 1.9 4.7E-05 23.2 5.0 200 5-228 16-236 (242)
349 PRK07428 nicotinate-nucleotide 85.9 0.93 2.4E-05 25.4 3.4 48 177-225 229-277 (285)
350 cd00311 TIM Triosephosphate is 85.8 1.2 3E-05 24.7 3.9 40 187-228 198-239 (242)
351 PRK13813 orotidine 5'-phosphat 85.8 2.9 7.3E-05 21.8 11.6 138 49-224 55-202 (215)
352 PRK13399 fructose-1,6-bisphosp 85.7 2.9 7.4E-05 21.7 8.7 89 140-238 179-272 (347)
353 pfam04476 DUF556 Protein of un 85.6 2.4 6.2E-05 22.3 5.4 134 67-226 14-161 (235)
354 COG1964 Predicted Fe-S oxidore 85.3 1 2.6E-05 25.1 3.4 77 38-130 97-179 (475)
355 PRK04165 acetyl-CoA decarbonyl 85.3 3 7.7E-05 21.6 6.9 168 50-239 131-324 (454)
356 PRK03170 dihydrodipicolinate s 85.2 3.1 7.8E-05 21.6 7.5 188 8-238 23-226 (292)
357 PRK07084 fructose-bisphosphate 85.1 3.1 7.8E-05 21.6 9.7 181 45-238 46-263 (321)
358 cd00954 NAL N-Acetylneuraminic 85.0 3 7.6E-05 21.7 5.7 233 7-297 21-271 (288)
359 pfam02679 ComA (2R)-phospho-3- 84.8 3.2 8.1E-05 21.5 6.0 106 62-187 87-197 (245)
360 PRK12999 pyruvate carboxylase; 84.6 3.3 8.3E-05 21.4 12.8 51 132-193 690-740 (1147)
361 pfam01964 ThiC ThiC family. Th 83.9 2.4 6.1E-05 22.4 4.8 81 56-156 72-161 (421)
362 PRK04322 peptidyl-tRNA hydrola 83.2 3.4 8.6E-05 21.3 5.3 75 78-161 11-90 (116)
363 PRK07114 keto-hydroxyglutarate 83.1 3.7 9.4E-05 21.0 11.1 161 46-225 14-198 (223)
364 PRK12653 fructose-6-phosphate 83.1 3.7 9.5E-05 21.0 9.9 136 41-217 47-188 (220)
365 cd03320 OSBS o-Succinylbenzoat 83.0 3.7 9.5E-05 20.9 9.0 144 46-228 71-218 (263)
366 PRK00230 orotidine 5'-phosphat 82.4 3.9 1E-04 20.8 10.5 139 47-225 53-217 (231)
367 TIGR01182 eda 2-dehydro-3-deox 82.1 1.9 4.9E-05 23.1 3.7 65 131-211 17-83 (205)
368 COG0854 PdxJ Pyridoxal phospha 81.9 0.72 1.8E-05 26.2 1.5 91 52-161 66-157 (243)
369 COG0149 TpiA Triosephosphate i 81.9 2.8 7.1E-05 21.9 4.5 55 176-230 186-245 (251)
370 cd06556 ICL_KPHMT Members of t 81.7 4.1 0.00011 20.6 6.6 154 4-196 19-199 (240)
371 TIGR03569 NeuB_NnaB N-acetylne 81.1 2.7 6.9E-05 22.0 4.2 98 80-201 107-207 (329)
372 PRK08999 hypothetical protein; 81.0 2.2 5.6E-05 22.6 3.7 72 140-219 239-311 (312)
373 KOG4201 consensus 80.9 3.9 1E-04 20.8 4.9 68 143-221 202-271 (289)
374 PRK00366 ispG 4-hydroxy-3-meth 80.3 4.6 0.00012 20.3 5.2 25 100-129 114-138 (367)
375 pfam00793 DAHP_synth_1 DAHP sy 80.3 3.6 9.2E-05 21.0 4.6 84 94-192 113-198 (271)
376 cd00308 enolase_like Enolase-s 80.2 4.1 0.0001 20.7 4.8 93 105-218 81-177 (229)
377 PRK12655 fructose-6-phosphate 80.2 4.6 0.00012 20.2 10.3 137 40-217 46-188 (220)
378 PRK12656 fructose-6-phosphate 80.2 4.6 0.00012 20.2 10.9 142 40-228 47-195 (222)
379 pfam01136 Peptidase_U32 Peptid 80.1 2.8 7E-05 21.9 4.0 27 50-80 41-67 (232)
380 PRK08195 4-hydroxy-2-ketovaler 79.9 4.7 0.00012 20.2 6.9 128 69-225 97-234 (337)
381 TIGR02146 LysS_fung_arch homoc 79.8 4.8 0.00012 20.2 6.3 118 60-191 73-193 (355)
382 pfam01729 QRPTase_C Quinolinat 79.4 4.9 0.00012 20.1 5.1 95 105-225 67-164 (169)
383 COG0407 HemE Uroporphyrinogen- 79.3 4.9 0.00012 20.1 5.0 96 95-214 171-268 (352)
384 cd00951 KDGDH 5-dehydro-4-deox 79.2 5 0.00013 20.0 10.5 191 7-237 21-224 (289)
385 PRK05848 nicotinate-nucleotide 79.1 2 5.1E-05 22.9 3.0 22 196-217 187-209 (272)
386 PRK02308 uvsE putative UV dama 78.4 2.6 6.7E-05 22.0 3.4 92 42-151 109-210 (316)
387 PRK13126 consensus 78.3 2.3 6E-05 22.4 3.1 163 23-220 42-212 (237)
388 COG0800 Eda 2-keto-3-deoxy-6-p 78.0 5.3 0.00014 19.8 5.5 79 46-151 11-89 (211)
389 COG0135 TrpF Phosphoribosylant 78.0 5.4 0.00014 19.8 6.7 47 174-224 143-191 (208)
390 PRK09389 (R)-citramalate synth 77.7 5.5 0.00014 19.7 8.0 79 54-151 136-214 (487)
391 TIGR00559 pdxJ pyridoxal phosp 77.6 1.2 3.1E-05 24.5 1.5 35 137-180 24-59 (265)
392 PRK01362 putative translaldola 77.5 5.5 0.00014 19.7 9.1 132 46-218 50-187 (214)
393 PRK06852 aldolase; Validated 77.4 5.6 0.00014 19.7 8.4 129 72-224 133-273 (303)
394 TIGR03239 GarL 2-dehydro-3-deo 77.4 5.6 0.00014 19.7 7.7 139 46-220 10-173 (249)
395 TIGR01859 fruc_bis_ald_ fructo 77.1 3.9 9.9E-05 20.8 4.0 186 40-238 32-272 (339)
396 PRK05301 pyrroloquinoline quin 76.9 5.7 0.00015 19.6 6.0 117 30-153 73-189 (375)
397 TIGR01162 purE phosphoribosyla 76.2 6 0.00015 19.4 5.4 106 99-227 9-125 (159)
398 pfam07505 Gp37_Gp68 Phage prot 76.2 6 0.00015 19.4 5.5 102 48-184 109-211 (253)
399 TIGR01769 GGGP geranylgeranylg 75.8 4.2 0.00011 20.6 3.8 69 135-214 141-210 (212)
400 PRK13305 sgbH 3-keto-L-gulonat 75.7 6.1 0.00016 19.4 9.9 142 47-224 56-199 (220)
401 PRK00915 2-isopropylmalate syn 75.6 6.2 0.00016 19.3 9.5 21 133-153 148-168 (511)
402 cd04824 eu_ALAD_PBGS_cysteine_ 75.3 5.5 0.00014 19.7 4.3 214 2-233 2-261 (320)
403 PTZ00333 triosephosphate isome 75.3 6.3 0.00016 19.3 5.0 43 187-232 205-249 (252)
404 PRK13753 dihydropteroate synth 75.3 6.3 0.00016 19.3 5.9 63 57-125 22-85 (279)
405 TIGR00734 hisAF_rel hisA/hisF 75.3 3.1 7.8E-05 21.6 3.0 90 119-221 133-227 (230)
406 PRK09196 fructose-1,6-bisphosp 74.3 6.6 0.00017 19.1 9.9 89 141-239 180-273 (347)
407 pfam00701 DHDPS Dihydrodipicol 74.1 6.7 0.00017 19.1 16.4 187 8-238 23-226 (289)
408 TIGR02320 PEP_mutase phosphoen 74.1 3.7 9.5E-05 21.0 3.2 147 66-224 23-189 (272)
409 COG0422 ThiC Thiamine biosynth 74.0 4.8 0.00012 20.1 3.8 125 57-203 75-237 (432)
410 cd00956 Transaldolase_FSA Tran 72.9 7.1 0.00018 18.9 8.8 130 47-217 51-186 (211)
411 cd03465 URO-D_like The URO-D _ 72.5 7.3 0.00019 18.8 6.0 145 62-234 111-263 (330)
412 TIGR03217 4OH_2_O_val_ald 4-hy 72.3 7.3 0.00019 18.8 7.6 139 68-236 95-243 (333)
413 PRK13803 bifunctional phosphor 72.2 7.4 0.00019 18.8 8.5 58 174-234 153-215 (611)
414 pfam05853 DUF849 Prokaryotic p 71.7 3.1 7.8E-05 21.6 2.3 90 57-159 23-113 (274)
415 pfam00224 PK Pyruvate kinase, 71.7 2.7 6.8E-05 22.0 2.0 36 187-224 216-254 (348)
416 COG0269 SgbH 3-hexulose-6-phos 71.6 7.6 0.00019 18.7 9.3 143 46-224 55-200 (217)
417 PRK06739 pyruvate kinase; Vali 71.3 2.8 7.2E-05 21.8 2.1 19 206-224 226-244 (352)
418 PRK09206 pyruvate kinase; Prov 70.9 2.8 7.1E-05 21.9 2.0 17 206-222 233-249 (470)
419 PTZ00300 pyruvate kinase; Prov 70.5 2.8 7.1E-05 21.9 1.9 16 207-222 208-223 (454)
420 PRK13306 ulaD 3-keto-L-gulonat 70.3 8.1 0.00021 18.5 11.0 141 47-223 56-198 (216)
421 PRK06354 pyruvate kinase; Prov 70.1 3.1 7.9E-05 21.5 2.1 34 187-222 218-254 (589)
422 pfam02548 Pantoate_transf Keto 69.8 8.3 0.00021 18.4 13.0 148 4-195 23-204 (261)
423 TIGR00284 TIGR00284 dihydropte 69.6 8.3 0.00021 18.4 5.5 65 63-152 181-246 (529)
424 TIGR03586 PseI pseudaminic aci 69.4 7.2 0.00018 18.8 3.8 99 80-202 108-207 (327)
425 PRK06247 pyruvate kinase; Prov 69.3 3.1 7.9E-05 21.5 1.9 18 206-223 230-247 (477)
426 pfam04309 G3P_antiterm Glycero 69.2 5.9 0.00015 19.5 3.3 144 45-218 16-170 (174)
427 PRK05826 pyruvate kinase; Prov 69.0 3.3 8.3E-05 21.4 2.0 43 206-248 234-297 (461)
428 PRK10128 putative aldolase; Pr 68.9 8.6 0.00022 18.3 8.0 65 64-153 13-79 (250)
429 TIGR02534 mucon_cyclo muconate 68.7 8.7 0.00022 18.2 8.5 129 45-207 129-258 (369)
430 COG1456 CdhE CO dehydrogenase/ 68.6 3 7.5E-05 21.7 1.7 97 49-157 135-240 (467)
431 TIGR00089 TIGR00089 RNA modifi 68.0 9 0.00023 18.1 5.8 143 52-213 177-342 (455)
432 pfam01981 PTH2 Peptidyl-tRNA h 67.9 9 0.00023 18.1 5.3 94 78-182 11-109 (116)
433 TIGR02317 prpB methylisocitrat 67.8 9 0.00023 18.1 5.0 165 49-234 12-198 (287)
434 COG0502 BioB Biotin synthase a 67.8 9.1 0.00023 18.1 4.4 75 57-152 84-159 (335)
435 cd02430 PTH2 Peptidyl-tRNA hyd 67.6 9.1 0.00023 18.1 4.2 74 78-160 10-88 (115)
436 TIGR00419 tim triosephosphate 67.2 4.6 0.00012 20.2 2.5 163 46-221 55-242 (244)
437 TIGR00381 cdhD CO dehydrogenas 67.2 3.5 8.9E-05 21.2 1.8 11 145-155 155-165 (401)
438 TIGR02313 HpaI-NOT-DapA 2,4-di 66.6 4.4 0.00011 20.4 2.3 108 58-193 19-132 (294)
439 PRK12376 putative translaldola 66.6 9.5 0.00024 17.9 9.4 144 46-229 59-208 (238)
440 TIGR00222 panB 3-methyl-2-oxob 66.6 9.5 0.00024 17.9 6.6 101 57-195 93-206 (267)
441 cd00288 Pyruvate_Kinase Pyruva 65.7 3.5 8.8E-05 21.2 1.6 16 207-222 235-250 (480)
442 PRK09284 thiamine biosynthesis 65.0 8.5 0.00022 18.3 3.5 26 274-299 502-527 (612)
443 TIGR03470 HpnH hopanoid biosyn 64.4 10 0.00027 17.7 6.9 126 63-218 62-200 (318)
444 TIGR03471 HpnJ hopanoid biosyn 63.7 7.9 0.0002 18.5 3.1 76 57-154 227-304 (472)
445 PRK08508 biotin synthase; Prov 63.1 11 0.00028 17.5 4.7 127 52-207 34-172 (279)
446 pfam04551 GcpE GcpE protein. I 63.0 11 0.00028 17.5 5.6 58 47-128 69-126 (345)
447 cd01568 QPRTase_NadC Quinolina 62.7 11 0.00028 17.4 3.8 39 177-217 169-209 (269)
448 pfam03851 UvdE UV-endonuclease 62.4 1.4 3.6E-05 24.0 -0.9 32 117-148 172-203 (275)
449 PRK05692 hydroxymethylglutaryl 61.5 12 0.0003 17.3 10.7 161 15-191 37-202 (287)
450 PRK12344 putative alpha-isopro 61.4 12 0.0003 17.3 8.3 76 57-151 155-231 (530)
451 PRK09517 multifunctional thiam 60.6 12 0.00031 17.2 4.1 15 46-60 229-243 (738)
452 COG0469 PykF Pyruvate kinase [ 60.1 6 0.00015 19.4 2.0 15 208-222 238-252 (477)
453 cd00554 MECDP_synthase MECDP_s 60.0 12 0.00032 17.1 4.5 57 57-125 71-132 (153)
454 COG0826 Collagenase and relate 59.3 13 0.00032 17.0 6.9 22 8-30 18-40 (347)
455 cd00465 URO-D_CIMS_like The UR 58.6 9.9 0.00025 17.8 2.9 155 41-224 64-235 (306)
456 PRK00042 tpiA triosephosphate 58.5 11 0.00028 17.5 3.1 33 188-221 204-238 (251)
457 TIGR03581 EF_0839 conserved hy 58.2 10 0.00026 17.8 2.8 157 44-230 52-215 (236)
458 PTZ00145 phosphoribosylpyropho 57.2 14 0.00035 16.8 4.2 142 50-206 124-301 (443)
459 PRK07896 nicotinate-nucleotide 57.2 14 0.00035 16.8 4.6 39 177-217 187-226 (288)
460 COG0157 NadC Nicotinate-nucleo 56.8 12 0.0003 17.3 3.0 38 178-216 177-215 (280)
461 PRK05835 fructose-bisphosphate 56.1 14 0.00036 16.7 10.6 123 99-238 112-250 (307)
462 COG1411 Uncharacterized protei 56.1 14 0.00036 16.7 3.4 92 117-221 120-215 (229)
463 KOG0623 consensus 56.0 14 0.00036 16.6 4.0 12 208-219 348-359 (541)
464 pfam07071 DUF1341 Protein of u 56.0 12 0.00031 17.1 3.0 98 45-152 53-153 (218)
465 KOG3111 consensus 55.8 14 0.00037 16.6 7.0 130 50-215 7-140 (224)
466 PRK06256 biotin synthase; Vali 55.5 15 0.00037 16.6 10.0 132 57-217 90-236 (325)
467 TIGR00423 TIGR00423 conserved 54.5 12 0.0003 17.2 2.7 15 137-151 116-130 (331)
468 cd00516 PRTase_typeII Phosphor 53.5 16 0.0004 16.4 4.7 37 187-224 238-275 (281)
469 PRK11864 2-ketoisovalerate fer 53.0 16 0.0004 16.3 5.0 40 195-234 155-195 (300)
470 TIGR01235 pyruv_carbox pyruvat 52.9 16 0.0004 16.3 3.3 195 55-290 639-857 (1169)
471 PRK10116 universal stress prot 52.9 16 0.00041 16.3 5.8 102 51-161 9-118 (142)
472 pfam09863 DUF2090 Uncharacteri 52.8 16 0.00041 16.3 11.6 86 162-264 205-304 (310)
473 PRK08187 pyruvate kinase; Vali 52.7 7.5 0.00019 18.7 1.4 83 30-126 115-207 (606)
474 COG0191 Fba Fructose/tagatose 51.3 17 0.00043 16.1 5.5 162 40-216 34-234 (286)
475 COG0855 Ppk Polyphosphate kina 51.3 16 0.00041 16.2 3.0 46 103-152 386-431 (696)
476 COG0821 gcpE 1-hydroxy-2-methy 50.9 17 0.00043 16.1 5.8 58 47-128 74-131 (361)
477 cd03323 D-glucarate_dehydratas 50.5 17 0.00044 16.0 10.1 119 57-214 167-289 (395)
478 cd01573 modD_like ModD; Quinol 50.3 17 0.00044 16.0 5.3 39 177-217 172-211 (272)
479 cd06557 KPHMT-like Ketopantoat 50.2 17 0.00044 16.0 10.6 149 5-195 20-200 (254)
480 PRK12928 lipoyl synthase; Prov 49.9 18 0.00045 16.0 4.8 131 48-217 83-240 (290)
481 PRK12857 putative aldolase; Re 49.8 18 0.00045 16.0 9.1 160 45-218 40-234 (284)
482 cd01745 GATase1_2 Subgroup of 49.6 15 0.00037 16.6 2.5 52 174-227 20-71 (189)
483 cd04726 KGPDC_HPS 3-Keto-L-gul 49.5 18 0.00046 15.9 9.8 139 47-223 53-193 (202)
484 PRK07998 gatY putative fructos 48.7 18 0.00047 15.9 14.0 157 45-218 40-231 (283)
485 TIGR01880 Ac-peptdase-euk N-ac 48.6 12 0.00031 17.1 2.0 23 91-113 206-230 (433)
486 PRK02048 4-hydroxy-3-methylbut 48.6 18 0.00047 15.8 7.2 22 49-70 199-220 (613)
487 pfam00121 TIM Triosephosphate 48.4 18 0.00047 15.9 2.9 34 187-221 200-235 (243)
488 PRK07315 fructose-bisphosphate 47.7 19 0.00048 15.7 13.3 106 99-217 114-233 (293)
489 COG0621 MiaB 2-methylthioadeni 47.6 19 0.00048 15.7 3.7 120 55-191 171-298 (437)
490 PRK05443 polyphosphate kinase; 46.8 18 0.00046 15.9 2.7 54 99-156 380-439 (692)
491 pfam03932 CutC CutC family. Co 46.4 20 0.0005 15.6 7.2 138 52-218 3-149 (202)
492 TIGR02177 PorB_KorB 2-oxoacid: 46.2 7.1 0.00018 18.9 0.5 38 136-196 42-79 (302)
493 COG4294 Uve UV damage repair e 45.2 6 0.00015 19.4 -0.0 45 104-151 190-234 (347)
494 PRK09240 thiH thiamine biosynt 44.7 21 0.00053 15.4 7.1 116 11-153 63-179 (371)
495 pfam02503 PP_kinase Polyphosph 44.7 20 0.00052 15.5 2.7 54 99-156 373-432 (678)
496 TIGR02640 gas_vesic_GvpN gas v 44.2 15 0.00037 16.6 1.8 60 4-65 94-166 (265)
497 COG0429 Predicted hydrolase of 42.7 22 0.00057 15.2 8.1 106 125-237 82-198 (345)
498 COG1038 PycA Pyruvate carboxyl 42.4 23 0.00058 15.2 6.6 77 58-153 692-768 (1149)
499 pfam02574 S-methyl_trans Homoc 42.0 23 0.00058 15.1 6.5 95 61-189 199-303 (303)
500 PRK12737 gatY tagatose-bisphos 41.8 23 0.00059 15.1 8.7 123 128-264 149-276 (284)
No 1
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=0 Score=679.89 Aligned_cols=312 Identities=51% Similarity=0.881 Sum_probs=296.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 97786078999999828982998170332477608978983027457846999826998999998875310453777442
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLN 80 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN 80 (322)
|+||||+|||.|||++++.+++|||||+++++++++++++++++++|+|+++||||+||+.|++||++++++|||+||||
T Consensus 18 M~gvTD~~fR~l~R~~~~~~l~yTEMvsa~al~~~~~~~~l~~~~~E~Pv~vQl~G~dp~~la~Aa~i~~~~g~d~IDlN 97 (333)
T PRK11815 18 MMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLN 97 (333)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 79980799999999977997798699851466617988885069877987999747999999999999987398853523
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 56413677666889999855899999999985027906999861134566532201455432000122012100135664
Q gi|254781167|r 81 VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAIL 160 (322)
Q Consensus 81 ~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~ 160 (322)
||||++||+++|+||+||++|+++.+||+++++++++|||||||+|||+.++++.+.+|++.++++||+++||||||+++
T Consensus 98 ~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l 177 (333)
T PRK11815 98 VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVHARKAWL 177 (333)
T ss_pred CCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf 89986887327801787079999999999998734885357863167777528999999999997599889996027877
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 02577421227661046787666738875302577778998988874203523441220001243999999871998888
Q gi|254781167|r 161 KGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240 (322)
Q Consensus 161 ~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~~~~~ 240 (322)
+|+|||+||++||+||++|+++|+++|++||++||||+|.+|+.++++.||||||||||++|||||+||++++++... +
T Consensus 178 ~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s~~~~~~~l~~~DGVMiGRga~~nPwif~~id~~~~g~~~-~ 256 (333)
T PRK11815 178 KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPA-P 256 (333)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHCCCC-C
T ss_conf 267877750587304899999997667871884599699999999985599621148675599789999999848999-9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99988999999999999999999998522876799899899987389998999999986217811069999999998652
Q gi|254781167|r 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFNLMIE 320 (322)
Q Consensus 241 ~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~~l~E 320 (322)
.|+. .+++..+.+|++.+..++..+..++||+.|||||+||+|.||+.||+.+...++..++|+++++.+.+
T Consensus 257 ~~s~--------~ei~~~~~~y~~~~~~~g~~~~~~~rHl~~~~~G~pGak~~R~~Lse~~~~~~~~~~~l~~a~~~~~~ 328 (333)
T PRK11815 257 VPSR--------EEVLEAMLPYIEAHLAQGGRLNHITRHMLGLFQGLPGARRWRRYLSENAHKPGAGIEVLEEALALVEE 328 (333)
T ss_pred CCCH--------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999--------99999999999999984998899999999986499878999999714176899969999999986457
Q ss_pred C
Q ss_conf 1
Q gi|254781167|r 321 S 321 (322)
Q Consensus 321 ~ 321 (322)
.
T Consensus 329 ~ 329 (333)
T PRK11815 329 A 329 (333)
T ss_pred H
T ss_conf 4
No 2
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=100.00 E-value=0 Score=662.15 Aligned_cols=302 Identities=25% Similarity=0.427 Sum_probs=278.6
Q ss_pred CCCCCCHHHHHHHHHHCC------CEEEECCCCCCHHHHCCC-HH--HHHHCCCCCCCEEEEEECCCHHHHHHHHH-HHH
Q ss_conf 977860789999998289------829981703324776089-78--98302745784699982699899999887-531
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTN------NALLYTEMIVADAILRGD-KK--NILGFSTQEKPLALQIGGADISKLVEAAK-IVE 70 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~------~~~~~TEmi~a~~l~~~~-~~--~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~-~~~ 70 (322)
||||||+|||+||++|+. .+|+||||||++++++.+ .+ +++.++++|+|.++|||||+|+.+++||+ +.+
T Consensus 15 mAGvtD~~FR~l~~~~~~skvGtvagL~~~EMvs~~~~~~~~r~~~~~~~~~~~~~~~~~~Ql~Gs~P~~~aeAAk~i~~ 94 (336)
T TIGR00737 15 MAGVTDLAFRRLVAEYGQSKVGTVAGLTVSEMVSSEAIVYKSRERTKKLLDIDEDETPISVQLFGSDPDTMAEAAKLINE 94 (336)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 77876717899999852144331241002220045378862355577653212588854787647882689999999853
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---EEEEEEEECCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 0453777442564136776668899998558999999999850279---0699986113456653220145543200012
Q gi|254781167|r 71 DFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS---IPVTVKCRIGVDDQIPAVALRNLVKSIKKSG 147 (322)
Q Consensus 71 ~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~---~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g 147 (322)
+.|+|.||||||||+|||+|+|+||+||++|+++.+||++++++|+ +|||||||+|||+ ++.++.+++++++++|
T Consensus 95 ~~ga~~IDiN~GCP~~Kitk~~aGsaLl~~p~~~~~iv~~vV~AV~~~~iPVTVK~R~GWD~--~h~n~~~~a~~a~~~G 172 (336)
T TIGR00737 95 ELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDAQDIPVTVKIRIGWDD--AHINAVEAARIAEDAG 172 (336)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC--CCCCHHHHHHHHHHCC
T ss_conf 05898885367654884216763543235868999999999987518766516655156362--4488899999998724
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-C--CCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCH
Q ss_conf 2012100135664025774212276610467876667388-7--53025777789989888742--03523441220001
Q gi|254781167|r 148 VNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-D--LFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKN 222 (322)
Q Consensus 148 ~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~--~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~ 222 (322)
+++||||||| +.|+|.|+|+||+|+++|+++. . +|||+||||+++++|..||+ ||||||||||++||
T Consensus 173 a~Av~lHGRT--------RaQ~Y~G~A~wd~I~~vKq~v~~~GeiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~ 244 (336)
T TIGR00737 173 AQAVTLHGRT--------RAQGYEGEANWDIIARVKQAVRKEGEIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGALGN 244 (336)
T ss_pred CCEEEHHHHH--------HCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHHCCC
T ss_conf 0002111000--------00157887606899999999716875332227742467899999863788689850022278
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 2439999998719988889998899999999999999999999852-287679989989998738999899999998621
Q gi|254781167|r 223 SAMLTTVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLH-SGGKLQQITRHMIGLFHGFPNSRRCRHILTVEA 301 (322)
Q Consensus 223 P~if~~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~-~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~ 301 (322)
||||+||.+||.++.+.+.|+..+.... +..|.+.+.+++| +..+++.+|||+.||++|+|+.+.||+.++ ..
T Consensus 245 PWl~~~i~~yL~tG~~~~~p~~~ek~~~-----~~~H~~~l~~~yGse~~g~~~~RKh~~wYl~g~~~~~~~R~~~~-~~ 318 (336)
T TIGR00737 245 PWLFKQIEQYLTTGKYKPPPTLAEKLDA-----ILRHLQLLADYYGSESKGLRIARKHIAWYLKGFPGNAALRQTLN-KI 318 (336)
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-CC
T ss_conf 7589999999726877889888999999-----99999999998378034688999999998622663479999997-04
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 78110699999999986
Q gi|254781167|r 302 GASTATHHIIETAFNLM 318 (322)
Q Consensus 302 ~~~~~~~~iie~~~~~l 318 (322)
.+.++..++|++|++.+
T Consensus 319 ~~~~E~~~ll~~~~~~~ 335 (336)
T TIGR00737 319 SSFQEVKQLLDDFEETV 335 (336)
T ss_pred CCHHHHHHHHHHHHHCC
T ss_conf 89889999999974125
No 3
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=0 Score=608.82 Aligned_cols=300 Identities=20% Similarity=0.322 Sum_probs=267.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHH--HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 97786078999999828982998170332477608978983--0274578469998269989999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNIL--GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~--~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
|+||||+|||+||+++|++ ++|||||+++++++.+.++.+ ...+++.|+++||||+||+.|++||+++++.|+|.||
T Consensus 17 Magvtd~~FR~l~~~~Ga~-l~~TEmv~a~~~~~~~~~~~~~~~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~ID 95 (321)
T PRK10415 17 MAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPKEMADAARINVESGAQIID 95 (321)
T ss_pred CCCCCCHHHHHHHHHHCCC-EEEECCEEECHHHHCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7899489999999998839-999875871277733848898630467889805997269999999999988764999894
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
||||||++||+++|+||+||++|+++.+|++++++++++|||||||+|||++ ..++.++++.++++|+++|||||||
T Consensus 96 iN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~--~~~~~~~~~~~e~aG~~~itvHgRT- 172 (321)
T PRK10415 96 INMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPE--HRNCEEIAQLAEDCGIQALTIHGRT- 172 (321)
T ss_pred EECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--HHHHHHHHHHHHHCCCCEEEEEHHH-
T ss_conf 3189998997079836506339899999999997344874699984688852--2439999999985698899997221-
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6402577421227661046787666738875302577778998988874--20352344122000124399999987199
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
++|+|.|++||++|+++++.+ .+||++||||+|.+||.+++ +|||||||||||++|||||+||++++.++
T Consensus 173 -------~~q~y~g~adw~~i~~vk~~~-~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g 244 (321)
T PRK10415 173 -------RACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTG 244 (321)
T ss_pred -------HHHHHCCCCCHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCC
T ss_conf -------344316998779999998547-997896589199999999998629999997566536987799999998169
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 88889998899999999999999999999852287679989989998738999899999998621781106999999999
Q gi|254781167|r 237 LTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFN 316 (322)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~ 316 (322)
...++|...+... ++..|.++..+++++..+++.+|||+.||+||+||+++||+.++ ...+.++..+.|++||+
T Consensus 245 ~~~~~~~~~e~~~-----~~~~h~~~~~~~~g~~~~~~~~Rkh~~~Y~kg~~g~~~~R~~~~-~~~~~~ev~~~l~~~~e 318 (321)
T PRK10415 245 ELLPPLPLAEVKR-----LLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFN-AIEDASEQLEALEAYFE 318 (321)
T ss_pred CCCCCCCHHHHHH-----HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf 9799969999999-----99999999999869075699999789999588987699999997-48999999999999998
Q ss_pred HH
Q ss_conf 86
Q gi|254781167|r 317 LM 318 (322)
Q Consensus 317 ~l 318 (322)
.+
T Consensus 319 ~~ 320 (321)
T PRK10415 319 NF 320 (321)
T ss_pred HC
T ss_conf 43
No 4
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=100.00 E-value=0 Score=600.30 Aligned_cols=300 Identities=29% Similarity=0.469 Sum_probs=272.0
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHH--HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 977860789999998289829981703324776089789--830274578469998269989999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKN--ILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~--~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
|+||||+|||++||++|+.+++|||||+++++++++++. ++.++++|+|+++||+|+||+.|++||++++++|+|+||
T Consensus 5 M~g~td~~fR~l~~~~g~~~l~~TEmv~a~~l~~~~~~~~~~~~~~~~e~P~~~Ql~G~dp~~~~~aa~~~~~~g~d~ID 84 (309)
T pfam01207 5 MAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQLGGSDPALLAEAAKLVADLGADIID 84 (309)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 89990799999999979592999798997135438875887420076789728999369999999999998863999896
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
||||||+++|+++|+||+||++|+++.+|++++++++++|||||||+|||+ +.+.+.+|+++++++|+++|||||||
T Consensus 85 lN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~--~~~~~~~~~~~l~~~G~~~itvH~Rt- 161 (309)
T pfam01207 85 INMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDE--SHENAVEIARRVEDAGAQALTVHGRT- 161 (309)
T ss_pred EECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCC--CHHHHHHHHHHHHHCCCCEEEEECCC-
T ss_conf 518999999878997762541778999999999975588546754337887--63889999999984688879996763-
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6402577421227661046787666738875302577778998988874--20352344122000124399999987199
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
++|+|.|++||++|+++++.++ +||++||||+|.+|+.+++ +||||||||||+++|||||+++.+.+.+.
T Consensus 162 -------~~q~~~g~a~w~~i~~~k~~~~-ipvi~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPwif~~~~~~~~~~ 233 (309)
T pfam01207 162 -------RAQNYEGPADWDAIKQVKQAVS-IPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQHTVKTGE 233 (309)
T ss_pred -------HHHCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHHCCC
T ss_conf -------2402678654189999998589-82898089488999999986109999998489774988889889997399
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 88889998899999999999999999999852287679989989998738999899999998621781106999999999
Q gi|254781167|r 237 LTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFN 316 (322)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~ 316 (322)
.. +.|...+ ...++.+|.+|..++++++.+++.+|||+.||+||+||+++||+.|+ +....++..+.+|++++
T Consensus 234 ~~-~~~~~~e-----~~~~~~~~~~~~~~~~g~~~~~~~~rk~~~~y~kg~~ga~~~R~~l~-~~~~~~e~~~~le~~l~ 306 (309)
T pfam01207 234 FD-PRPPLAE-----EAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYLKGFPGAAELRRELN-DVFDPTEALINLDAALR 306 (309)
T ss_pred CC-CCCCHHH-----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf 78-9998689-----99999999999999875898699999999999779978899999983-69999999999999998
Q ss_pred HH
Q ss_conf 86
Q gi|254781167|r 317 LM 318 (322)
Q Consensus 317 ~l 318 (322)
..
T Consensus 307 ~~ 308 (309)
T pfam01207 307 AA 308 (309)
T ss_pred HC
T ss_conf 51
No 5
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=100.00 E-value=0 Score=596.14 Aligned_cols=311 Identities=49% Similarity=0.816 Sum_probs=300.4
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHC-CCCCEEEE
Q ss_conf 97786078999999828982998170332477608978983027457846999826998999998875310-45377744
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVED-FGYNEINL 79 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~-~g~~~idl 79 (322)
|.++||.+||.+.|+++..+++|||||+|.+++|++++++++++++|+|+++||+|+||+.+++||+++++ +|||+|||
T Consensus 8 M~d~TdrHfRYf~R~Lsk~~lLYTeMita~aIihgD~~~~l~~~~~E~PvAlQlgg~dp~~l~~ca~i~e~h~gydEiNL 87 (326)
T TIGR00742 8 MLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEEKPVALQLGGSDPNDLAKCAKIAEKHRGYDEINL 87 (326)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 34330268999999975222003554005778877678875017677865785078988999999999986458742215
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------CCCCCHHHHHHHHCCCC-CCHHH
Q ss_conf 256413677666889999855899999999985027906999861134566------53220145543200012-20121
Q gi|254781167|r 80 NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQ------IPAVALRNLVKSIKKSG-VNGIW 152 (322)
Q Consensus 80 N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~------~~~~~~~~~~~~~~~~g-~~~it 152 (322)
|.|||+.+|.++.+|||||.++++|++||++|++++++|||||+|||.|+. ++|+++.+|++.+++.| |+.++
T Consensus 88 NVGCPSdrvQng~fGACLMg~a~lVa~cv~~M~~~v~iPvtvK~RiGId~~ssdykndSYe~l~~Fv~~v~~~Gec~~Fi 167 (326)
T TIGR00742 88 NVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVEIPVTVKHRIGIDELSSDYKNDSYEELCDFVEIVSGKGECQNFI 167 (326)
T ss_pred CCCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 66883122204441111116823689999998971578822420147564433223233789999999861788611346
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 00135664025774212276610467876667388753025777789989888742035234412200012439999998
Q gi|254781167|r 153 IHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 153 iH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
||+|.|+++|+|||+||.+||++|+.||+||+++|++.|-+||||++.|++..+|+-+|||||||.||.||.+|++++..
T Consensus 168 vHARkAwL~GlSPKeNR~IPpL~y~~VYqLKkdfp~L~i~INGGI~~~E~~k~HL~~vD~VMvGR~Ay~NP~l~A~~dr~ 247 (326)
T TIGR00742 168 VHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDRE 247 (326)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHH
T ss_conf 87899985788862257877987246776520032105633578553599997655643113022430052689999899
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 71998888999889999999999999999999985228767998998999873899989999999862178110699999
Q gi|254781167|r 233 FSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIE 312 (322)
Q Consensus 233 l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie 312 (322)
|++.+. +.++ ..+++..|.+|+++++..+..+..+.|||+++|.|.||||+||+.||+.+.+..+..++|+
T Consensus 248 ~~~~~~-~~~~--------~~~i~~~M~pYie~~l~~g~~ln~i~rHllg~f~~~~gAk~wRr~Ls~~~~k~~a~~e~l~ 318 (326)
T TIGR00742 248 IFNETD-EILT--------RKEIVEQMLPYIEERLSQGLSLNHITRHLLGLFQGKPGAKQWRRYLSENALKAGAGIEVLE 318 (326)
T ss_pred HHCCCC-CCCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf 707787-7779--------7999998679999997436223379999999870881047886621514575026826899
Q ss_pred HHHHHHHH
Q ss_conf 99998652
Q gi|254781167|r 313 TAFNLMIE 320 (322)
Q Consensus 313 ~~~~~l~E 320 (322)
.|+..+.+
T Consensus 319 ~Al~~~~~ 326 (326)
T TIGR00742 319 TALELVKE 326 (326)
T ss_pred HHHHHHCC
T ss_conf 99986139
No 6
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=558.48 Aligned_cols=297 Identities=33% Similarity=0.544 Sum_probs=254.8
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCC--CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 97786078999999828982998170332477608978983027--4578469998269989999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFS--TQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~--~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
|+||||.|||++||++|+.+++|||||++++++++.+++++... +.|+|+++||+||+|+.|++||+++++.|+|+||
T Consensus 18 M~gvtd~~fR~l~~~~ga~~l~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~laeaA~~~~~~g~~~ID 97 (323)
T COG0042 18 MAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAAKIAEELGADIID 97 (323)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCCHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 88986689999999958875289740453045527700443056456678779997389989999999999866999898
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279-06999861134566532201455432000122012100135
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK 157 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt 157 (322)
||||||+++|+++|+||+||++|+++.+||++++++++ +|||||||+|||+.+ ....++++.++++|+++|||||||
T Consensus 98 lN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~--~~~~~ia~~~~~~G~~~ltVHgRt 175 (323)
T COG0042 98 LNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDD--ILALEIARILEDAGADALTVHGRT 175 (323)
T ss_pred EECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHH--CCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 768999289808984477717989999999999985388874999857878002--009999999996798789995566
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 664025774212276610467876667388753025777789989888742--035234412200012439999998719
Q gi|254781167|r 158 AILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~ 235 (322)
+ .|+|.+++||++|+++|+.++++||++||||+|.+||.++++ ||||||||||+++|||+|+++ +++.+
T Consensus 176 r--------~~~y~~~a~~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i-~~~~~ 246 (323)
T COG0042 176 R--------AQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI-DYLET 246 (323)
T ss_pred H--------HHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHH-HHHCC
T ss_conf 7--------64689864879999999867997598579949999999999841898799743531695575533-55306
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 98888999889999999999999999999985228767998998999873899989999999862178110699999999
Q gi|254781167|r 236 PLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAF 315 (322)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~ 315 (322)
+...+ +...+... .+..|.++..++.+ ...+..+|||+.||++|+|++++||+.++ ......+..+.++.++
T Consensus 247 g~~~~-~~~~e~~~-----~~~~~~~~~~~~~~-~~~~~~~rkh~~~~~~~~~~a~~~r~~~~-~~~~~~~~~~~l~~~~ 318 (323)
T COG0042 247 GELLP-PTLAEVLD-----ILREHLELLLEYYG-KKGLRRLRKHLGYYLKGLPGARELRRALN-KAEDGAEVRRALEAVF 318 (323)
T ss_pred CCCCC-CCHHHHHH-----HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 88788-77999999-----99999999998624-10699999999999864853799999986-6276999999999987
Q ss_pred H
Q ss_conf 9
Q gi|254781167|r 316 N 316 (322)
Q Consensus 316 ~ 316 (322)
.
T Consensus 319 ~ 319 (323)
T COG0042 319 E 319 (323)
T ss_pred H
T ss_conf 5
No 7
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=0 Score=538.53 Aligned_cols=290 Identities=22% Similarity=0.263 Sum_probs=239.9
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHH--HH------HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 97786078999999828982998170332477608978--98------30274578469998269989999988753104
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKK--NI------LGFSTQEKPLALQIGGADISKLVEAAKIVEDF 72 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~--~~------~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~ 72 (322)
|+||||+|||++|+++|+.+++|||||++...+...++ ++ ....+.+.|+++||+|+||+.|+++|+.+.++
T Consensus 8 MaGvTd~~fR~l~~~~g~~dl~~TEfv~v~~~~~~~k~~~r~~~el~~~~~~~~~~Pv~vQl~G~dpe~~a~aA~~~~e~ 87 (312)
T PRK10550 8 MEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELHNASRTPSGTLVRIQLLGQYPQWLAENAARAVEL 87 (312)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 78887799999999968998899661235767741167876276765123587788368884278889999999999976
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCH
Q ss_conf 5377744256413677666889999855899999999985027--90699986113456653220145543200012201
Q gi|254781167|r 73 GYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNG 150 (322)
Q Consensus 73 g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~ 150 (322)
|+++||||||||+++|+++|+||+||++|+++.++++++++++ ++|||||||+|||+.+ ...++++.++++|+++
T Consensus 88 g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~---~~~e~~~~~~~~G~~~ 164 (312)
T PRK10550 88 GSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGD---RKFEIADAVQQAGATE 164 (312)
T ss_pred CCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC---HHHHHHHHHHHCCCCE
T ss_conf 9996625479997896689926853289779999999999745878995477535899863---1999999999739987
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHH
Q ss_conf 210013566402577421227661-046787666738875302577778998988874--20352344122000124399
Q gi|254781167|r 151 IWIHARKAILKGLSPKDNRKIPNL-DYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 151 itiH~Rt~~~~g~s~~~~~~~~~~-~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~ 227 (322)
||||||| ++|+|.+++ ||++|+++++.+ .+||++||||+|.+|+.+++ +||||||||||+++|||||+
T Consensus 165 ltvH~RT--------~~q~y~~~~~dw~~i~~~~~~~-~iPvi~NGdI~s~~d~~~~~~~tg~dgvMiGRgal~nP~l~~ 235 (312)
T PRK10550 165 LVVHGRT--------KEQGYRAEHIDWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSR 235 (312)
T ss_pred EEEECCC--------HHHCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHH
T ss_conf 9990552--------6535899834899999999748-998997079599999999987148999996585530977999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 99998719988889998899999999999999999999852287679989989998738999899999998621781106
Q gi|254781167|r 228 TVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTAT 307 (322)
Q Consensus 228 ~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~ 307 (322)
+|+. ++ ...|+ .+.. .++..|.+...++......+..||||+.||.+|+|+++++|+.+. ...+.++.
T Consensus 236 ~i~~---~~--~~~~~-~~~~-----~~~~~~~~l~~~~~~~~~~~~rmKk~~~~~~~~~p~a~~lr~~i~-~~~~~~e~ 303 (312)
T PRK10550 236 VVKY---NE--PRMPW-PEVV-----ALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYDEATELFQEIR-ALNNSPDI 303 (312)
T ss_pred HHHC---CC--CCCCH-HHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HCCCHHHH
T ss_conf 8613---79--99998-9999-----999999999863310366899999999999860996999999998-43999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781167|r 308 HHIIETA 314 (322)
Q Consensus 308 ~~iie~~ 314 (322)
.++++++
T Consensus 304 ~~~l~~l 310 (312)
T PRK10550 304 ARAIQAI 310 (312)
T ss_pred HHHHHHH
T ss_conf 9999863
No 8
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=0 Score=496.73 Aligned_cols=220 Identities=40% Similarity=0.682 Sum_probs=207.0
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHH--HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 97786078999999828982998170332477608978--9830274578469998269989999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKK--NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~--~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
|+||||+|||++|+++|++ ++|||||+++++++++++ .++..+++|+|+++||+||||+.|++||+++.++|+|+||
T Consensus 7 M~g~td~~fR~l~~~~g~~-~~~TEmv~a~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~d~ID 85 (231)
T cd02801 7 MVGVTDLPFRLLCRRYGAD-LVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGID 85 (231)
T ss_pred CCCCCCHHHHHHHHHHCCC-EEEECCEEEHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 8998479999999998939-899798998776538887898724486678079987589899999999988753999999
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
||||||+++|+++|+||+||++|+++.+||+++++++++|||||||+|||+. ..+.+|++.++++|+++|||||||
T Consensus 86 lN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~---~~~~~~~~~l~~~G~~~ltvH~Rt- 161 (231)
T cd02801 86 LNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLELAKALEDAGASALTVHGRT- 161 (231)
T ss_pred EECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEEECCC-
T ss_conf 8389996997089830787629789999999999756994799997077863---479999999997699899983561-
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 64025774212276610467876667388753025777789989888742--0352344122000124399999987
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l 233 (322)
++|+|+|++||++|+++++. +++||++||||+|.+|+.++++ ||||||||||+++|||||+|+++.+
T Consensus 162 -------~~q~~~~~a~~e~i~~~~~~-~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~iF~~i~~~~ 230 (231)
T cd02801 162 -------REQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKELL 230 (231)
T ss_pred -------HHHCCCCCCCHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHH
T ss_conf -------44146776226999999865-9977998389099999999998509999998788876988999999975
No 9
>KOG2335 consensus
Probab=100.00 E-value=0 Score=443.72 Aligned_cols=282 Identities=29% Similarity=0.492 Sum_probs=229.4
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCH--HHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9778607899999982898299817033247760897--89830274578469998269989999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDK--KNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~--~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
|++||++|||+|||.+|.+ ++|||||.|+.++++.+ +..+.++++++|+++|++||||+.|.+||+++++++ |+||
T Consensus 26 Mvd~S~l~fR~L~R~y~~~-l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~id 103 (358)
T KOG2335 26 MVDYSELAFRRLVRLYGAD-LLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC-DGID 103 (358)
T ss_pred CCCCCHHHHHHHHHHHCCC-EEECHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC-CCCC
T ss_conf 2446278999999996876-5722478888874174210001136877786699974799899999999865334-7204
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
||||||+..+.++|+||+||.+|+++.+||++++..++.|||||||++-| .+.+++++++++++|++.+||||||+
T Consensus 104 lNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d----~~kTvd~ak~~e~aG~~~ltVHGRtr 179 (358)
T KOG2335 104 LNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVD----LEKTVDYAKMLEDAGVSLLTVHGRTR 179 (358)
T ss_pred CCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCC----HHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 15899878884377260002388999999999985259986999985576----78789999999867986899936557
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 6402577421227661046787666738875302577778998988874--20352344122000124399999987199
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
.|+|. .++++||+.|+.+++++|++||++||+|.+.+|+.+++ +|+||||+|||.+.|||+|.. .
T Consensus 180 ~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~-------~ 246 (358)
T KOG2335 180 EQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT-------A 246 (358)
T ss_pred HHCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHCCCHHHCC-------C
T ss_conf 76288------8887677999999974767708950885768999999997587468860000038412026-------8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH-HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 8888999889999999999999999999985228767998998999873899989-9999998621781106999999
Q gi|254781167|r 237 LTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSR-RCRHILTVEAGASTATHHIIET 313 (322)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak-~~R~~Ls~~~~~~~~~~~iie~ 313 (322)
.+.+.|+ ....++.++..++.+.. ....++.|+...++-+=... ..|+.++. ........+.+++
T Consensus 247 ~~~~~~~----------~~~~~~l~~~~e~~g~~-~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~-~~~~~~~~~~l~~ 312 (358)
T KOG2335 247 GYGPTPW----------GCVEEYLDIAREFGGLS-SFSLIRHHLFKMLRPLLSIHQDLRRDLAA-LNSCESVIDFLEE 312 (358)
T ss_pred CCCCCHH----------HHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHH
T ss_conf 8777878----------89999999999727972-36678889999999997551788988762-1342219999999
No 10
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=0 Score=392.10 Aligned_cols=201 Identities=21% Similarity=0.314 Sum_probs=171.7
Q ss_pred CCCCCCHHHHHHHHHHCCCEE------EECCCCCCHHHHCCCHHHH-------------HHCCCCCCCEEEEEECCCHHH
Q ss_conf 977860789999998289829------9817033247760897898-------------302745784699982699899
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNAL------LYTEMIVADAILRGDKKNI-------------LGFSTQEKPLALQIGGADISK 61 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~------~~TEmi~a~~l~~~~~~~~-------------~~~~~~e~p~~~Ql~g~~p~~ 61 (322)
||||||+|||+++++..+..+ .+++|+++..+...+++++ ....+.+.|+++||||+||+.
T Consensus 7 MAGVTD~pFrr~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~~~~~~~~pv~vQi~g~~~e~ 86 (233)
T cd02911 7 MAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSSSLEP 86 (233)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf 89995899999999837957972122018999999999971723212345101336788762246897189930699999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99988753104537774425641367766688999985589999999998502790699986113456653220145543
Q gi|254781167|r 62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVK 141 (322)
Q Consensus 62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~ 141 (322)
+++||+++++. .|.||||||||+|||+++|+||+||+||+++.+|+++++. +++|||||||+|||.+ ..++++
T Consensus 87 ~~~Aa~~~~~~-~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~-~~~PVtvKiR~G~d~~-----~~~~a~ 159 (233)
T cd02911 87 LLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVD-----DEELAR 159 (233)
T ss_pred HHHHHHHHHCC-CCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCC-----HHHHHH
T ss_conf 99999997436-9999997999928983797537773898999999999985-3898427985699988-----899999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCC
Q ss_conf 2000122012100135664025774212276610467876667388753025777789989888742-035234412200
Q gi|254781167|r 142 SIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAY 220 (322)
Q Consensus 142 ~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~ 220 (322)
.++++|+++|++|++. |.+.+||+.|++++. .+||++||||+|.+||.++++ |||||||||||+
T Consensus 160 ~~e~aG~~~l~v~~~~------------~~~~ad~~~I~~~~~---~i~VigNGDI~s~eda~~~~~~G~DgVMIgRgAL 224 (233)
T cd02911 160 LIEKAGADIIHVDAMD------------PGNHADLKKIRDIST---ELFIIGNNSVTTIESAKEMFSYGADMVSVARASL 224 (233)
T ss_pred HHHHHCCCEEEEECCC------------CCCHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHC
T ss_conf 9998396079943207------------785089999998637---9879980896999999999985999999738755
Q ss_pred CHH
Q ss_conf 012
Q gi|254781167|r 221 KNS 223 (322)
Q Consensus 221 ~~P 223 (322)
.|-
T Consensus 225 ~n~ 227 (233)
T cd02911 225 PEN 227 (233)
T ss_pred CCC
T ss_conf 685
No 11
>KOG2333 consensus
Probab=100.00 E-value=0 Score=380.00 Aligned_cols=275 Identities=23% Similarity=0.349 Sum_probs=230.8
Q ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHH--HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHC-CCCCEEEE
Q ss_conf 7860789999998289829981703324776089789--83027457846999826998999998875310-45377744
Q gi|254781167|r 3 DWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKN--ILGFSTQEKPLALQIGGADISKLVEAAKIVED-FGYNEINL 79 (322)
Q Consensus 3 g~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~--~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~-~g~~~idl 79 (322)
-|-++|||+||+.+|+| .+|.||-.+..|+++...+ +++.|..|.-++|||+|+.|+.+++||+++.+ ..+|.|||
T Consensus 274 TvGNLPFRRlCk~lGAD-vTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFIDl 352 (614)
T KOG2333 274 TVGNLPFRRLCKKLGAD-VTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDL 352 (614)
T ss_pred CCCCCCHHHHHHHHCCC-CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 35785089999985886-41567888778753653124566405766532367426886889999999986166004632
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCHHHHHHHHC-CCCCCHHHHHHHH
Q ss_conf 2564136776668899998558999999999850279-0699986113456653220145543200-0122012100135
Q gi|254781167|r 80 NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVALRNLVKSIK-KSGVNGIWIHARK 157 (322)
Q Consensus 80 N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~~~~~~~~~~-~~g~~~itiH~Rt 157 (322)
|||||..-|.++|+|||||.+|.++..+|+++..+++ +|+|||||.|..+..+ ...+++..+. +-|++++|+|||.
T Consensus 353 N~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~--~a~~Li~~i~newg~savTlHGRS 430 (614)
T KOG2333 353 NMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHP--VAHELIPRIVNEWGASAVTLHGRS 430 (614)
T ss_pred CCCCCHHEEECCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH--HHHHHHHHHHHCCCCCEEEECCCH
T ss_conf 689971102206775054238189999999998760578748998404436761--388999998642475337752720
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6640257742122766104678766673887-53025777789989888742---0352344122000124399999987
Q gi|254781167|r 158 AILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALKILP---SVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~~l~---~~dgvMigRga~~~P~if~~I~~~l 233 (322)
++|||+..|||+||.++.+.... +++++||||.|++|-.+.++ .+|+|||||||+-.||||.||++.-
T Consensus 431 --------RqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq 502 (614)
T KOG2333 431 --------RQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQ 502 (614)
T ss_pred --------HHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf --------655310236827899999744567526765750648999887535997544786145301325766566653
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHH---HH-CCCCCHH--HHHHHHH
Q ss_conf 199888899988999999999999999999998522876-7998998999---87-3899989--9999998
Q gi|254781167|r 234 SNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGK-LQQITRHMIG---LF-HGFPNSR--RCRHILT 298 (322)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~-i~~irKhl~~---y~-kGlpgak--~~R~~Ls 298 (322)
++... .++ +.+++..+..|.-+|+|...+ +..-|++++- || +.+|-+= .+++.||
T Consensus 503 ~wD~s-----Ste-----RldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiPv~l~e~lpqriN 564 (614)
T KOG2333 503 HWDIS-----STE-----RLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIPVGLLEVLPQRIN 564 (614)
T ss_pred CCCCC-----CHH-----HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHC
T ss_conf 27865-----058-----999999998622331077631188999999999988775230887640725333
No 12
>KOG2334 consensus
Probab=99.98 E-value=3e-32 Score=257.58 Aligned_cols=214 Identities=29% Similarity=0.420 Sum_probs=186.8
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHH-----------------HHHCCCCCCC-EEEEEECCCHHHH
Q ss_conf 977860789999998289829981703324776089789-----------------8302745784-6999826998999
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKN-----------------ILGFSTQEKP-LALQIGGADISKL 62 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~-----------------~~~~~~~e~p-~~~Ql~g~~p~~~ 62 (322)
|+-+-.+|.|+|+-+||++ ++|||.|.+..|+.+-++. .+..+|.|+. +++|++.++|+..
T Consensus 18 Mvr~G~lpmrLLal~~Gad-lv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ~gT~sa~lA 96 (477)
T KOG2334 18 MVRAGELPMRLLALQYGAD-LVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQIGTASAELA 96 (477)
T ss_pred HHHHCCCHHHHHHHHHCCC-EECCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECHHHCCEEEEEECCCCHHHH
T ss_conf 7774300589999984665-033812534899845352352336043442775638988341231807998348868899
Q ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 99887531045377744256413677666889999855899999999985027906999861134566532201455432
Q gi|254781167|r 63 VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKS 142 (322)
Q Consensus 63 ~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~ 142 (322)
.++|+++... ..+||+|||||....+++|+||+||.+|+.+..|+.++++...+|||+|||+ .++.+.++++.++
T Consensus 97 ~e~A~lv~nD-vsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~----L~s~edtL~lv~r 171 (477)
T KOG2334 97 LEAAKLVDND-VSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRL----LDSKEDTLKLVKR 171 (477)
T ss_pred HHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCEEEEEE----CCCCCCHHHHHHH
T ss_conf 9999976224-4453003799975421347785010688889999999984576651468984----4784207999999
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH---HHHHH--HHCCCCEEEEC
Q ss_conf 00012201210013566402577421227661046787666738875302577778998---98887--42035234412
Q gi|254781167|r 143 IKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS---QALKI--LPSVDGVMIGR 217 (322)
Q Consensus 143 ~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~---~a~~~--l~~~dgvMigR 217 (322)
+.+.|+.+|+||+|| ++.|...|++-++++++....+.++|+.||+..+.+ |.... ..+.|||||+|
T Consensus 172 i~~tgi~ai~vh~rt--------~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR 243 (477)
T KOG2334 172 ICATGIAAITVHCRT--------RDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIAR 243 (477)
T ss_pred HHHCCCCEEEEEEEC--------CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 996287569998642--------666777889779999999871663376155412577631288889985340455348
Q ss_pred CCCCHHHHHHH
Q ss_conf 20001243999
Q gi|254781167|r 218 AAYKNSAMLTT 228 (322)
Q Consensus 218 ga~~~P~if~~ 228 (322)
.|..||.+|.+
T Consensus 244 ~A~~n~SiF~~ 254 (477)
T KOG2334 244 AAESNPSIFRE 254 (477)
T ss_pred HHHCCCCEEEE
T ss_conf 65259866520
No 13
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=99.91 E-value=8.7e-25 Score=202.54 Aligned_cols=218 Identities=23% Similarity=0.343 Sum_probs=175.9
Q ss_pred CCCCCHHHHHHHHHHCCC-------------------EEEECCCCCCHHHHCCCHHHHHH---CCCCCCC-----EEEEE
Q ss_conf 778607899999982898-------------------29981703324776089789830---2745784-----69998
Q gi|254781167|r 2 VDWTDRHYRFFARLLTNN-------------------ALLYTEMIVADAILRGDKKNILG---FSTQEKP-----LALQI 54 (322)
Q Consensus 2 ag~Td~~fR~l~r~~~~~-------------------~~~~TEmi~a~~l~~~~~~~~~~---~~~~e~p-----~~~Ql 54 (322)
+|+|-..-|++.+.--|+ .-+..=|++|-+|--..-..+++ ...+|-| +++-+
T Consensus 21 ~G~~~~~l~~~~~~gaGAVvTKs~g~~pr~Gy~nPtiVE~~~G~lNAiGL~NPG~e~fl~E~~~~~~e~~t~dvr~I~sv 100 (308)
T TIGR01037 21 MGSGVEALRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVEVPCGLLNAIGLQNPGVEAFLEELKDVREEVPTHDVRLIASV 100 (308)
T ss_pred CCCCHHHHHHHHCCCCCEEEECCEECCCCCCCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 36628899987505886378621331588854438079817855752358982179999863256643898752899983
Q ss_pred ECCCHHHHHHHHHHHHC-CC-CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 26998999998875310-45-37774425641367766688999985589999999998502790699986113456653
Q gi|254781167|r 55 GGADISKLVEAAKIVED-FG-YNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~-~g-~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
||++||+|++.|+.+++ .. .|.++||..||. +|+|+|...-+||++++++++++++++++||.+|+ .+|
T Consensus 101 yG~~~EEfa~va~~~e~A~~y~~~~ELN~SCPh---vK~G~G~~iG~dP~l~~~vv~avK~~~d~Pv~aKL------sPN 171 (308)
T TIGR01037 101 YGESEEEFAEVAEKLEDADPYVDAYELNVSCPH---VKGGGGIEIGQDPELSADVVKAVKDKVDVPVFAKL------SPN 171 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEC------CCC
T ss_conf 188822589999987211344000010477744---34234655477877999999998300078657864------865
Q ss_pred CCCHHHHHHHHCCCCCCHHH----HH--------HHHHHH----HCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCC
Q ss_conf 22014554320001220121----00--------135664----0257742122766104678766673887--530257
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIW----IH--------ARKAIL----KGLSPKDNRKIPNLDYDIVYEIKKENPD--LFIGLN 194 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~it----iH--------~Rt~~~----~g~s~~~~~~~~~~~~~~i~~l~~~~~~--~~i~~N 194 (322)
..+..|+++.++++|+|.|| |. .|.-++ .|+|++. +.|.-...||+|.+.+ + +||+|-
T Consensus 172 V~Di~eiA~a~eeaGaDGlt~INTl~PGMkIDI~~~kPiLaNk~GGlSGPA---IKPiA~r~VYdly~~~-ddriPIiGv 247 (308)
T TIGR01037 172 VTDITEIAKAAEEAGADGLTLINTLRPGMKIDIKAKKPILANKTGGLSGPA---IKPIAVRMVYDLYKEV-DDRIPIIGV 247 (308)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCC---CCCEEEEEHHHHHHHH-CCCCCEEEE
T ss_conf 668999988875327761640012034677734207870000458850750---1422121000047773-782346863
Q ss_pred CCCCCHHHHHHH-HHCCCCEEEECCCCCHH-HHHHHHHHH
Q ss_conf 777899898887-42035234412200012-439999998
Q gi|254781167|r 195 GGLEDMSQALKI-LPSVDGVMIGRAAYKNS-AMLTTVDEY 232 (322)
Q Consensus 195 Gdi~~~~~a~~~-l~~~dgvMigRga~~~P-~if~~I~~~ 232 (322)
|||+|+|||.++ |.|+.+|.||.+.|.+| .+|.+|.+.
T Consensus 248 GGi~~~eDA~Efl~AGAsAVQvGtAvyy~g~~~f~~i~~~ 287 (308)
T TIGR01037 248 GGITSFEDALEFLMAGASAVQVGTAVYYRGYKVFKKIIEG 287 (308)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHH
T ss_conf 2745589999999852202200022211775244888767
No 14
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.77 E-value=2.8e-18 Score=154.57 Aligned_cols=175 Identities=24% Similarity=0.396 Sum_probs=141.9
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 74578469998269989999988753104537774425641367766688999985589999999998502790699986
Q gi|254781167|r 44 STQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 44 ~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.+...|+++.|.|.+++++.+.++.++++|+|.|.||+.||. -.+.|..+.+||+.+.++++++++++++||.||+
T Consensus 86 ~~~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiScPN----t~~~g~~~~~~~~~~~~i~~~vk~~~~~Pi~vKl 161 (296)
T cd04740 86 REFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPN----VKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL 161 (296)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC----CCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 568971899816898789999999988648988999788998----6763677574999999999999860489669971
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH---------------HHCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 113456653220145543200012201210013566---------------40257742122766104678766673887
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAI---------------LKGLSPKDNRKIPNLDYDIVYEIKKENPD 188 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~---------------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~ 188 (322)
-- +.....++++.++++|++.|++--++.- ..|+|++. ..+.-..+|+.+++.. +
T Consensus 162 sP------~~~~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~---l~~~al~~v~~~~~~~-~ 231 (296)
T cd04740 162 TP------NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPA---IKPIALRMVYQVYKAV-E 231 (296)
T ss_pred CC------CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHC-C
T ss_conf 89------800099999999976998899974678766364446755245578768677---8899999999998545-8
Q ss_pred CCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 5302577778998988874-2035234412200012439999998
Q gi|254781167|r 189 LFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 189 ~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
+||++.|||.|.+||.+++ .|++-|+|+.+++..|+++.+|.+.
T Consensus 232 ipIig~GGI~s~~da~e~i~aGAs~VQi~Tai~~Gp~~i~~i~~~ 276 (296)
T cd04740 232 IPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf 887975797999999999983998887236674292799999999
No 15
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=99.77 E-value=1.2e-17 Score=149.99 Aligned_cols=166 Identities=22% Similarity=0.325 Sum_probs=134.4
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 7846999826-998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
++|+++.|+| +++++..+.|+.+++.|+|.|.||++||. -...++.|+++-++|+++.++++++++++++||.||+
T Consensus 99 ~~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSCPn-~~~~~~~G~~~gq~pe~v~~i~~~Vk~~~~iPV~vKL-- 175 (413)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMVTRWVKRGSRLPVIAKL-- 175 (413)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEEE--
T ss_conf 9708999945878899999999866518877999555677-6666655511057999999999998850688569982--
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH--------------------HHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 345665322014554320001220121001356--------------------640257742122766104678766673
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA--------------------ILKGLSPKDNRKIPNLDYDIVYEIKKE 185 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~--------------------~~~g~s~~~~~~~~~~~~~~i~~l~~~ 185 (322)
.++...+.+++++++++|+++|++=-+.. ...|+|+. .+.|....+|+++.+.
T Consensus 176 ----sPnvtdi~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~---aikPiALr~V~~i~~~ 248 (413)
T PRK08318 176 ----TPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGP---AVKPIALNMVAEIARD 248 (413)
T ss_pred ----CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCH---HHHHHHHHHHHHHHHH
T ss_conf ----899752899999999769988999814786553202235530210677776766645---6769999999999863
Q ss_pred --CCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCH
Q ss_conf --8875302577778998988874-203523441220001
Q gi|254781167|r 186 --NPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKN 222 (322)
Q Consensus 186 --~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~ 222 (322)
.+++||++.|||.|.+||.+++ .|++.|+|+.+++.+
T Consensus 249 ~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQv~Ta~~~~ 288 (413)
T PRK08318 249 PETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQY 288 (413)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHC
T ss_conf 4678837797568598999999998278921675101433
No 16
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.75 E-value=1.3e-17 Score=149.55 Aligned_cols=175 Identities=21% Similarity=0.362 Sum_probs=141.8
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 74578469998269989999988753104-53777442564136776668899998558999999999850279069998
Q gi|254781167|r 44 STQEKPLALQIGGADISKLVEAAKIVEDF-GYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVK 122 (322)
Q Consensus 44 ~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~-g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK 122 (322)
...+.|+++.|+|++++++.+.++.+++. ++|.+.||+.||.- .+.|..+.++|+.+.++++++++++++||.||
T Consensus 88 ~~~~~pvi~si~~~~~~d~~~~~~~l~~~~~ad~ielNiScPn~----~~~g~~~~~~~~~l~~i~~~v~~~~~~Pv~vK 163 (301)
T PRK07259 88 EEFDTPIIANIAGSTPEEYVEVAEKLSKAPNVDAIELNISCPNV----KHGGMAFGTDPELAYEVVKAVKSVSKVPVIVK 163 (301)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 20699879973767768999999986455688889996547888----85266608799999999999987348977998
Q ss_pred EECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH---------------HHCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 6113456653220145543200012201210013566---------------4025774212276610467876667388
Q gi|254781167|r 123 CRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAI---------------LKGLSPKDNRKIPNLDYDIVYEIKKENP 187 (322)
Q Consensus 123 ~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~---------------~~g~s~~~~~~~~~~~~~~i~~l~~~~~ 187 (322)
+-- +...+.++++.++++|++.|++--++.- ..|+|++. ..+....+|+.+++..
T Consensus 164 lsP------~~~~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~---l~~~al~~v~~~~~~~- 233 (301)
T PRK07259 164 LTP------NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPA---IKPIALRMVYQVAKAV- 233 (301)
T ss_pred ECC------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHC-
T ss_conf 078------712199999999975998899956776765323567743357888634733---5189999999998516-
Q ss_pred CCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 75302577778998988874-2035234412200012439999998
Q gi|254781167|r 188 DLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 188 ~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
++||++.|||.|.+||.+++ .|++.|+|+.+.|..|.++.+|.+.
T Consensus 234 ~ipIig~GGI~s~~da~e~i~aGAs~VQv~Tav~~Gp~~~~~i~~~ 279 (301)
T PRK07259 234 DIPIIGMGGISTAEDAIEFMMAGASAVQVGTANFIDPYAFPEIIEG 279 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9888976797999999999983987987212331490699999999
No 17
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.73 E-value=5.7e-18 Score=152.32 Aligned_cols=174 Identities=24% Similarity=0.350 Sum_probs=141.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+.|+++.|.|++++++.+.++.+++.|.|.|.||+.||.- ..|..+-++|+.+.++++++++++++||.||+--
T Consensus 97 ~~~pli~Si~~~~~~~~~~~a~~~~~~gad~lElNiScPn~-----~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKLsp 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNV-----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-----CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99539997888987899999999998479848998403675-----6553201499999999999986026874884278
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH---------------HHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CC
Q ss_conf 345665322014554320001220121001356---------------64025774212276610467876667388-75
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA---------------ILKGLSPKDNRKIPNLDYDIVYEIKKENP-DL 189 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~---------------~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~ 189 (322)
- .+.....++++.+.++|++.|++..++. .+.|+|++. +.+.-..+|+++.+..+ ++
T Consensus 172 ~----~~~~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~---i~~~al~~v~~~~~~~~~~i 244 (289)
T cd02810 172 Y----FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAP---IRPLALRWVARLAARLQLDI 244 (289)
T ss_pred C----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCC
T ss_conf 8----7616899999999975996899967877655544445544567765236627---78899999999999749996
Q ss_pred CCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCH-HHHHHHHHH
Q ss_conf 302577778998988874-203523441220001-243999999
Q gi|254781167|r 190 FIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKN-SAMLTTVDE 231 (322)
Q Consensus 190 ~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~-P~if~~I~~ 231 (322)
+|+++|||.|.+||.+++ .|+|.|+++.+.+.+ |.++.+|.+
T Consensus 245 ~Iig~GGI~~~~da~e~i~aGA~~Vqv~Tal~~~Gp~ii~~i~~ 288 (289)
T cd02810 245 PIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKK 288 (289)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHC
T ss_conf 09998993999999999984997999989999758699999863
No 18
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.69 E-value=9.6e-16 Score=135.89 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=129.1
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+.|+++-|+|.+++++.+-|+.+++.|+|.|.||+.||....... -...++.+.++++++++++++||.||+
T Consensus 100 ~~~pvIaSi~g~s~ee~~~~a~~~e~~gadaiElNis~~~~~~~~~-----~~~~~~~~~~iv~~V~~~~~~Pv~vKL-- 172 (333)
T PRK07565 100 VDIPVIASLNGSSAGGWVDYARQIEEAGADALELNIYYLPTDPDIS-----GAEVEQRYLDILRAVKSAVSIPVAVKL-- 172 (333)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHCCCCEEEEC--
T ss_conf 5984598747799899999999997649988999766779886544-----465078899999999864688568735--
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH-----------HHH-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 345665322014554320001220121001356-----------640-25774212276610467876667388753025
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA-----------ILK-GLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~-----------~~~-g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
.++.....++++.++++|++.|++--+.. ... ++|+.. +.+.-..+|+.+.+.+ ++||++
T Consensus 173 ----sPn~tdi~~iA~aa~~~Gadgv~~iNT~~~~~Id~e~~~~~~~~~lSgp~---~~~~alr~v~~v~~~~-~ipIiG 244 (333)
T PRK07565 173 ----SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPA---ELRLPLRWIAILSGRV-GADLAA 244 (333)
T ss_pred ----CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCC---CCCHHHHHHHHHHCCC-CCCEEE
T ss_conf ----99821099999999974998899843666563315544373686667743---1207889999996046-989888
Q ss_pred CCCCCCHHHHHHHH-HCCCCEEEECCCCCH-HHHHHHHH
Q ss_conf 77778998988874-203523441220001-24399999
Q gi|254781167|r 194 NGGLEDMSQALKIL-PSVDGVMIGRAAYKN-SAMLTTVD 230 (322)
Q Consensus 194 NGdi~~~~~a~~~l-~~~dgvMigRga~~~-P~if~~I~ 230 (322)
.|||.|.+||.+++ .|++.|.||.+.+.+ |-+|.+|.
T Consensus 245 ~GGI~sg~DaiE~ilAGAsaVQv~Ta~~~~G~~v~~~i~ 283 (333)
T PRK07565 245 TTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTIL 283 (333)
T ss_pred ECCCCCHHHHHHHHHCCCCHHEEEHHHHHHCCHHHHHHH
T ss_conf 889598999999998098863362236653727999999
No 19
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.68 E-value=1.9e-16 Score=141.05 Aligned_cols=175 Identities=23% Similarity=0.341 Sum_probs=140.4
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 7846999826-998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
..|+++-+.| .+++++.+.++.+++.|+|.+.||+.||. ....++.|+.+-++|+.+.++++++++.+++||.||+=
T Consensus 99 ~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN-~~~~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pi~vKLs- 176 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPH-GMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT- 176 (299)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECC-
T ss_conf 9737988517898789999999998718888998267889-87612345552449999999999998624786489628-
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH--------------------HHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3456653220145543200012201210013566--------------------40257742122766104678766673
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAI--------------------LKGLSPKDNRKIPNLDYDIVYEIKKE 185 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~--------------------~~g~s~~~~~~~~~~~~~~i~~l~~~ 185 (322)
.+...+.++++.++++|++.|++--++.- ..|+|++. ..+.-..+|+++.+.
T Consensus 177 -----P~~~~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~~~~GGlSG~~---l~~~al~~v~~i~~~ 248 (299)
T cd02940 177 -----PNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPA---VKPIALRAVSQIARA 248 (299)
T ss_pred -----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHH
T ss_conf -----871549999999998599899997666775654422356665645677778455878---899999999999996
Q ss_pred C-CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCC-CHHHHHHHHHH
Q ss_conf 8-875302577778998988874-2035234412200-01243999999
Q gi|254781167|r 186 N-PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAY-KNSAMLTTVDE 231 (322)
Q Consensus 186 ~-~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~-~~P~if~~I~~ 231 (322)
. ++++|++.|||.|.+|+.+++ .|++.|+++.+.+ .-|.++.+|.+
T Consensus 249 ~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~I~~ 297 (299)
T cd02940 249 PEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHC
T ss_conf 4899778998995999999999984998999989999809899999972
No 20
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.68 E-value=8.6e-16 Score=136.26 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=143.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 784699982699899999887531045-3777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFG-YNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g-~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.-|++.-.+++.++....-+..++..+ +|.|.||++||. +++ |..|-++|+.+.++++++++.+++||.||+
T Consensus 96 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPn---t~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl-- 168 (310)
T COG0167 96 GVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPN---TPG--GRALGQDPELLEKLLEAVKAATKVPVFVKL-- 168 (310)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC---CCC--HHHHCCCHHHHHHHHHHHHHCCCCCEEEEE--
T ss_conf 7634887578857889999999975077887999853899---977--466543999999999999863568659993--
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHH----HH------------HHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-C
Q ss_conf 345665322014554320001220121001----35------------664025774212276610467876667388-7
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHA----RK------------AILKGLSPKDNRKIPNLDYDIVYEIKKENP-D 188 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~----Rt------------~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~ 188 (322)
.++...+.++++.+.++|+|.|++-- |. .-..|+|++ ++.|....+|+++.+.+. +
T Consensus 169 ----~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~i~~~~~~~~~~~~~GGLSG~---~ikp~al~~v~~l~~~~~~~ 241 (310)
T COG0167 169 ----APNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGP---PLKPIALRVVAELYKRLGGD 241 (310)
T ss_pred ----CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCC
T ss_conf ----88889999999999974985899970036655301234555667677775751---00278999999999842899
Q ss_pred CCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCH-HHHHHHHHHHH
Q ss_conf 5302577778998988874-203523441220001-24399999987
Q gi|254781167|r 189 LFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKN-SAMLTTVDEYF 233 (322)
Q Consensus 189 ~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~-P~if~~I~~~l 233 (322)
+|||+.|+|.|++||.+++ .|++-|.|+.+.+.+ |++|.+|.+.+
T Consensus 242 ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l 288 (310)
T COG0167 242 IPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGL 288 (310)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHH
T ss_conf 74898468696999999998297564041121020850999999999
No 21
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.67 E-value=3.9e-15 Score=131.36 Aligned_cols=170 Identities=22% Similarity=0.256 Sum_probs=127.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+.|+++-|+|.+++++.+-|+.+++.|+|.|.||+.||...-- ..+. ..++.+.++++++++++++||.||+
T Consensus 98 ~~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~~~~~~~--~~~~---~~~~~~~~iv~~Vk~~~~~Pv~vKL-- 170 (325)
T cd04739 98 VSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPD--ISGA---EVEQRYLDILRAVKSAVTIPVAVKL-- 170 (325)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCC---HHHHHHHHHHHHHHHCCCCCEEEEC--
T ss_conf 59875987168998999999999976499879996566788855--4421---0688999999999860788669953--
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH-----------HH-HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 345665322014554320001220121001356-----------64-025774212276610467876667388753025
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA-----------IL-KGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~-----------~~-~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
.++...+.++++.++++|++.|++--+.. .. .++|+.. ..+.-..+|+.+.+.. ++||++
T Consensus 171 ----sP~~~di~~ia~aa~~~GAdgi~liNT~~~~~id~~~~~~~~~~~lSg~~---~~~~alr~v~~~~~~~-~ipIiG 242 (325)
T cd04739 171 ----SPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPA---EIRLPLRWIAILSGRV-KASLAA 242 (325)
T ss_pred ----CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCC---CCHHHHHHHHHHHCCC-CCCEEE
T ss_conf ----99830099999999975998899735766564216764153687745753---0068899999996468-989888
Q ss_pred CCCCCCHHHHHHHH-HCCCCEEEECCCCCH-HHHHHHHH
Q ss_conf 77778998988874-203523441220001-24399999
Q gi|254781167|r 194 NGGLEDMSQALKIL-PSVDGVMIGRAAYKN-SAMLTTVD 230 (322)
Q Consensus 194 NGdi~~~~~a~~~l-~~~dgvMigRga~~~-P~if~~I~ 230 (322)
.|||.|.+||.+++ .|++.|.||.+.+.+ |-+|.+|.
T Consensus 243 ~GGI~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i~~~i~ 281 (325)
T cd04739 243 SGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred ECCCCCHHHHHHHHHCCCCHHHEEHHHHHHCCHHHHHHH
T ss_conf 889598999999998098876143234641837999999
No 22
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.56 E-value=5.5e-14 Score=122.95 Aligned_cols=224 Identities=18% Similarity=0.259 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHH-HCCCEEEECCCCCCHHHHC---------CCH-----HHHH-HCCCCCCCEEEEEECCC---------
Q ss_conf 860789999998-2898299817033247760---------897-----8983-02745784699982699---------
Q gi|254781167|r 4 WTDRHYRFFARL-LTNNALLYTEMIVADAILR---------GDK-----KNIL-GFSTQEKPLALQIGGAD--------- 58 (322)
Q Consensus 4 ~Td~~fR~l~r~-~~~~~~~~TEmi~a~~l~~---------~~~-----~~~~-~~~~~e~p~~~Ql~g~~--------- 58 (322)
.||...+...+. -|+.++.+||.+.....-. .+. +++. ..+.....+++||+-.-
T Consensus 31 pt~~~~~yy~~rA~gG~GLIite~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~ 110 (327)
T cd02803 31 PTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTG 110 (327)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99999999999974996179987778765124799975036235478887998876327987998720276556744468
Q ss_pred -----------------------------HHHHHHHHHHHHCCCCCEEEECCC---------CCHHHHHHHHHHHHHHHH
Q ss_conf -----------------------------899999887531045377744256---------413677666889999855
Q gi|254781167|r 59 -----------------------------ISKLVEAAKIVEDFGYNEINLNVG---------CPSARVHEGSFGACLMLN 100 (322)
Q Consensus 59 -----------------------------p~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v~~~g~GaaLl~~ 100 (322)
.+.+++||+.+.+.|||+|+|..+ +|.-.--...+|..+-..
T Consensus 111 ~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR 190 (327)
T cd02803 111 GPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENR 190 (327)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 99888775444568988862999999999999999999999849998998357661888721754698777788898999
Q ss_pred HHHHHHHHHHHHCCCC--EEEEEEEECCCCC----CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8999999999850279--0699986113456----653220145543200012201210013566402577421227661
Q gi|254781167|r 101 PDIVGDCIAAMCKALS--IPVTVKCRIGVDD----QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNL 174 (322)
Q Consensus 101 p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~----~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~ 174 (322)
...+.+|+++++++++ .||.+|+ ..++ ..+.+...++++.+++.|++.|.|...+............+.+..
T Consensus 191 ~Rf~~eii~air~~vg~df~vgvRl--s~~d~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~ 268 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRL--SADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGY 268 (327)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEE--CHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999999999999739887617997--70212689999899999999998559998997778456675446787777522
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 0467876667388753025777789989888742--0352344122000124399999
Q gi|254781167|r 175 DYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 175 ~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~ 230 (322)
.+++...+|+.+ .+|++++|+|.|+++|.+.++ .+|.|++||..+.||.+...+.
T Consensus 269 ~~~~~~~ik~~~-~~pvi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadPd~~~k~~ 325 (327)
T cd02803 269 FLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred CHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 389999999976-981999899899999999998899312586699997914999997
No 23
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=99.55 E-value=5.3e-14 Score=123.04 Aligned_cols=175 Identities=19% Similarity=0.270 Sum_probs=130.4
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 74578469998269989999988753104537774425641367766688999985589999999998502790699986
Q gi|254781167|r 44 STQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 44 ~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.+.+-|+++.+.|.+++++.+.++.+++. .|.|.||+.||. ++ .|..+-.+|++..++++.+++++++||+||+
T Consensus 90 ~~~~~~vi~si~g~~~~d~~~~~~~~~~~-ad~iElNiScPn---~~--~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl 163 (290)
T pfam01180 90 YPRPLGIILSKAGSTVEDYVEVARKIGPF-ADYLELNVSCPN---TP--GLRALQTDPELAAILLKVVKEVSKVPVLVKL 163 (290)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCEEEEEEECCC---CC--CCHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 38885378624669999999999999743-588999985368---87--6133404298999999998750478738983
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHH-------HHHH--------HH----HHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 11345665322014554320001220121-------0013--------56----64025774212276610467876667
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIW-------IHAR--------KA----ILKGLSPKDNRKIPNLDYDIVYEIKK 184 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~it-------iH~R--------t~----~~~g~s~~~~~~~~~~~~~~i~~l~~ 184 (322)
-- +......++..++.+|++.++ .-.| +. ...|+|++. +.+.-...|+++.+
T Consensus 164 sp------~~~~~~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~---i~~~al~~v~~~~~ 234 (290)
T pfam01180 164 AP------DLTDIVIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPA---IKPIALKVIRELYQ 234 (290)
T ss_pred CC------CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHH
T ss_conf 89------8774689999999718377689996587346555555566631256788857606---78999999999999
Q ss_pred HC-CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCC-CCHHHHHHHHHHHH
Q ss_conf 38-875302577778998988874-203523441220-00124399999987
Q gi|254781167|r 185 EN-PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAA-YKNSAMLTTVDEYF 233 (322)
Q Consensus 185 ~~-~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga-~~~P~if~~I~~~l 233 (322)
.. +++||++.|||.|.+||.+++ .|+|.|+|+.+. +..|.++..|.+.+
T Consensus 235 ~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~~Gp~~i~~i~~~L 286 (290)
T pfam01180 235 RVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIFGGPFIFPKIIDEL 286 (290)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7089974999889499999999998399799985899841917999999999
No 24
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative; InterPro: IPR005270 The function of this family is unknown, but it may include TIM-barrel proteins..
Probab=99.50 E-value=9.7e-14 Score=121.10 Aligned_cols=207 Identities=20% Similarity=0.303 Sum_probs=152.3
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEE-CCC------C-CCHHHHCCCHHHHH--------------HCCCC-CCCEEEEEECC
Q ss_conf 97786078999999828982998-170------3-32477608978983--------------02745-78469998269
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLY-TEM------I-VADAILRGDKKNIL--------------GFSTQ-EKPLALQIGGA 57 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~-TEm------i-~a~~l~~~~~~~~~--------------~~~~~-e~p~~~Ql~g~ 57 (322)
|||+||.-|=+=.+.|+.+ ++. =-+ . .++.+....++++. +...+ ...+.|.+=-+
T Consensus 1 MAGi~daeFCrK~k~y~f~-~V~lGGyNaDr~t~~A~r~i~kRGRkEF~f~~~e~~s~I~~~~~~~~Esr~~v~VnVr~~ 79 (234)
T TIGR00736 1 MAGISDAEFCRKLKDYLFA-LVTLGGYNADRETLKAARKIEKRGRKEFSFDLEELESIIKKEAKKIKESRAKVAVNVRIS 79 (234)
T ss_pred CCCCCCHHHHHHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9988524555444341100-312256303389999899998558940012532245788876676422035257886530
Q ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-CCCCCCCCCCH
Q ss_conf 98999998875310453777442564136776668899998558999999999850279069998611-34566532201
Q gi|254781167|r 58 DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI-GVDDQIPAVAL 136 (322)
Q Consensus 58 ~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl-G~~~~~~~~~~ 136 (322)
+-|.....+..+.++ .|.|+||+.|=+|-++.=|.|-.||.|++++.+++..+.-....||+||||+ +. ....
T Consensus 80 ~le~~~~v~~~~ae~-~diiEiNaHCRQPEiteiG~Gq~ll~n~e~L~ef~~k~~G~~~~p~fvKIRgN~~-----~ld~ 153 (234)
T TIGR00736 80 DLEEELDVELLVAEF-ADIIEINAHCRQPEITEIGIGQELLKNKELLKEFVAKVKGKLRKPVFVKIRGNVI-----KLDE 153 (234)
T ss_pred CCHHHHHHHHHHHHH-CCEEEECCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCC-----CCCH
T ss_conf 000456776654211-3737885758897615505653542380257888753034314723789715787-----5103
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 455432000122012100135664025774212276610467876667388753025777789989888742-0352344
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
...+..+.+.|++.|.|- +++.| + +.+|.+.+..+.+...|-.+|||..|.|.|.|.+|+. |+|-|-+
T Consensus 154 ~~~a~~l~d~g~d~iHvD---am~PG----~----~~aD~~l~~~~se~~nD~I~IGNNS~~dIE~a~~~l~aGad~vSv 222 (234)
T TIGR00736 154 LKVARKLVDAGVDAIHVD---AMKPG----E----DRADLDLVKLVSEVKNDKIVIGNNSVDDIESAKEMLKAGADAVSV 222 (234)
T ss_pred HHHHHHHHHHCCCEEEEE---EECCC----C----CCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 578789887323555543---22593----6----936789999988761885798068710368899999840158999
Q ss_pred ECCCCCHHHH
Q ss_conf 1220001243
Q gi|254781167|r 216 GRAAYKNSAM 225 (322)
Q Consensus 216 gRga~~~P~i 225 (322)
||+++..-.-
T Consensus 223 ARa~l~g~~~ 232 (234)
T TIGR00736 223 ARAVLKGEVE 232 (234)
T ss_pred HHHHHHCCCC
T ss_conf 9998611224
No 25
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.47 E-value=7.1e-13 Score=114.71 Aligned_cols=175 Identities=16% Similarity=0.212 Sum_probs=125.8
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCC-CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 457846999826998999998875310453-7774425641367766688999985589999999998502790699986
Q gi|254781167|r 45 TQEKPLALQIGGADISKLVEAAKIVEDFGY-NEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~-~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
....|+++.+.|.++++....++.+++.++ |.|+||+.||. +. | +..+..|++.+.++++++++++++||.||+
T Consensus 90 ~~~~~vi~si~g~~~~e~~~~~~~~~~~~~~~~ielNiScPN---t~-g-~~~~~~d~~~~~~il~~v~~~~~~Pi~vKl 164 (308)
T PRK02506 90 GPHKPHFLSVVGLSPEETHTILKKIQASDFEGLVELNLSCPN---VP-G-KPQIAYDFETTDQILTEVFTYFTKPLGVKL 164 (308)
T ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC---CC-C-HHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 799975888850775377888999875475425546333788---51-0-555522899999999999987503334558
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHH----------HHHHHHHH------HHCCCCCCCCCCCCCHHHHHHHHHHHC-
Q ss_conf 1134566532201455432000122012----------10013566------402577421227661046787666738-
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGI----------WIHARKAI------LKGLSPKDNRKIPNLDYDIVYEIKKEN- 186 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~i----------tiH~Rt~~------~~g~s~~~~~~~~~~~~~~i~~l~~~~- 186 (322)
=--. +...+.+++..+.+.|++.+ .+..+|.. +.|+|++ .+.+.--..|+.+.+..
T Consensus 165 sP~~----~~~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~---~l~~~al~~v~~~~~~~~ 237 (308)
T PRK02506 165 PPYF----DIVHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGD---YIKPTALANVHAFYQRLK 237 (308)
T ss_pred CCCC----CHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHC
T ss_conf 9877----767699999985615653798870235662013775101567887887761---133799999999999838
Q ss_pred CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCH-HHHHHHHHH
Q ss_conf 875302577778998988874-203523441220001-243999999
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKN-SAMLTTVDE 231 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~-P~if~~I~~ 231 (322)
+.++|++.|||.|.+||.+++ .|++-|.|+.+.+.+ |.++..|.+
T Consensus 238 ~~i~IIg~GGI~s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~ 284 (308)
T PRK02506 238 PSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAIFERITK 284 (308)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHH
T ss_conf 99638986670789999999981987206842220459479999999
No 26
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.44 E-value=7.5e-13 Score=114.56 Aligned_cols=179 Identities=16% Similarity=0.248 Sum_probs=133.1
Q ss_pred HHHCCCCCCCEEEEEECCC-------HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8302745784699982699-------899999887531045377744256413677666889999855899999999985
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGAD-------ISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMC 112 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~-------p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~ 112 (322)
+.+......|+++-|+++. .+++..+++.+.++ +|.+.||..||. ++ |-.-+++++.+.+++++++
T Consensus 121 L~~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~iNiSsPN---t~---glr~lq~~~~l~~ll~~v~ 193 (327)
T cd04738 121 LKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPN---TP---GLRDLQGKEALRELLTAVK 193 (327)
T ss_pred HHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCC---CC---CCCCCCCHHHHHHHHHHHH
T ss_conf 9840456871799985047882676899999999985355-778999546889---84---5100268899999999999
Q ss_pred CCC-----CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH------------HHHHCCCCCCCCCCCCCH
Q ss_conf 027-----906999861134566532201455432000122012100135------------664025774212276610
Q gi|254781167|r 113 KAL-----SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK------------AILKGLSPKDNRKIPNLD 175 (322)
Q Consensus 113 ~~~-----~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt------------~~~~g~s~~~~~~~~~~~ 175 (322)
+.. .+||.||+-=- .+...+.++++.+.++|++.|++---| .-..|+|++. ..+..
T Consensus 194 ~~~~~~~~~~Pi~vKlsPD----~~~~~i~~i~~~~~~~g~dGvi~tNTt~~r~~~~~~~~~~~~GGlSG~p---l~~~s 266 (327)
T cd04738 194 EERNKLGKKVPLLVKIAPD----LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP---LKERS 266 (327)
T ss_pred HHHHHCCCCCCEEEEECCC----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHH---HHHHH
T ss_conf 9998537788669981799----7667899999999973997899958855542124565556668636406---78999
Q ss_pred HHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC-CCHHHHHHHHHHH
Q ss_conf 467876667388-753025777789989888742-03523441220-0012439999998
Q gi|254781167|r 176 YDIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA-YKNSAMLTTVDEY 232 (322)
Q Consensus 176 ~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga-~~~P~if~~I~~~ 232 (322)
-+.++.+.+..+ .+|||+.|||.|.+||.+++. |+|-|+|+.|. |.-|+++.+|.+.
T Consensus 267 ~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aGAslVQiyT~liy~GP~li~~I~~~ 326 (327)
T cd04738 267 TEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999749998199988979999999999869969987689893190699999821
No 27
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.33 E-value=1.5e-11 Score=104.86 Aligned_cols=178 Identities=19% Similarity=0.239 Sum_probs=122.0
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHH--CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 45784699982699899999887531--0453777442564136776668899998558999999999850279069998
Q gi|254781167|r 45 TQEKPLALQIGGADISKLVEAAKIVE--DFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVK 122 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~~~~aa~~~~--~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK 122 (322)
....|+++-+.|+..+.....+++.. ..+.|.|.||+.||. +.+ +..+..+++.+.++++++++++++||.||
T Consensus 89 ~~~~pvi~si~g~~~d~~~~~~~~~~~~~~~aD~ielNiScPn---~~g--~~~~~~~~~~~~~~~~~v~~~~~~Pv~vK 163 (294)
T cd04741 89 GSAKPFFISVTGSAEDIAAMYKKIAAHQKQFPLAMELNLSCPN---VPG--KPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC---CCC--CHHHCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 5587089989998367999999998652255647999703789---887--31001399999999999984157855997
Q ss_pred EECCCCCCCCCCCHHHHHHHHCC--CCCCHHH----------HHHHHH--------HHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 61134566532201455432000--1220121----------001356--------640257742122766104678766
Q gi|254781167|r 123 CRIGVDDQIPAVALRNLVKSIKK--SGVNGIW----------IHARKA--------ILKGLSPKDNRKIPNLDYDIVYEI 182 (322)
Q Consensus 123 ~RlG~~~~~~~~~~~~~~~~~~~--~g~~~it----------iH~Rt~--------~~~g~s~~~~~~~~~~~~~~i~~l 182 (322)
+=--. +...+..++..+.. .|++.++ +..++. .+.|+|++. +.+.-...|+++
T Consensus 164 lsP~~----~~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~---l~p~al~~v~~~ 236 (294)
T cd04741 164 TPPYT----DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAY---LHPLALGNVRTF 236 (294)
T ss_pred CCCCC----CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHH
T ss_conf 28988----87899999999865788747999880367763335776564334556666667852---158999999999
Q ss_pred HHHCC-CCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCC-CHHHHHHHHHHHHC
Q ss_conf 67388-75302577778998988874-2035234412200-01243999999871
Q gi|254781167|r 183 KKENP-DLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAY-KNSAMLTTVDEYFS 234 (322)
Q Consensus 183 ~~~~~-~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~-~~P~if~~I~~~l~ 234 (322)
.+..+ +++|++.|||.|.+||.+++ .|++-|+++.+.+ .-|+++.+|.+.+.
T Consensus 237 ~~~~~~~i~Iig~GGI~s~~da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~~L~ 291 (294)
T cd04741 237 RRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELE 291 (294)
T ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9974999879998997999999999983997999979999709299999998799
No 28
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.30 E-value=2.3e-11 Score=103.57 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=131.3
Q ss_pred HHHHCCCCCCCEEEEEECCC-------HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98302745784699982699-------89999988753104537774425641367766688999985589999999998
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGAD-------ISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAM 111 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~-------p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~ 111 (322)
++.+..+...|+++.|+.|. .+++..+++.+.++ +|.+.||..||.-. |-.-+++++.+.++++++
T Consensus 126 ~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~~~l~~~-aDy~~INiSsPNT~------glr~lq~~~~L~~ll~~v 198 (336)
T PRK05286 126 RLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICLRKLYPY-ADYFTVNISSPNTP------GLRDLQAGEALDELLAAL 198 (336)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCC------CCCCCCCHHHHHHHHHHH
T ss_conf 99850567886589976237884166899999999998263-77899975689986------520004669999999999
Q ss_pred HCCC-----CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH-----------HHHHCCCCCCCCCCCCCH
Q ss_conf 5027-----906999861134566532201455432000122012100135-----------664025774212276610
Q gi|254781167|r 112 CKAL-----SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK-----------AILKGLSPKDNRKIPNLD 175 (322)
Q Consensus 112 ~~~~-----~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt-----------~~~~g~s~~~~~~~~~~~ 175 (322)
++.. .+||.+|+-=- .+...+.++++.+.+.|++.|++---| ...+|+|++- ..+..
T Consensus 199 ~~~~~~~~~~~PI~vKisPD----l~~~~l~~i~~~~~~~~idGii~tNTt~~r~~l~~~~~~~~GGLSG~p---l~~~s 271 (336)
T PRK05286 199 KEAQAELGKYVPLLLKIAPD----LSDEELDDIADLALEHGIDGIIATNTTLDRSGLEGPNAEEAGGLSGRP---LFERS 271 (336)
T ss_pred HHHHHHCCCCCCEEEECCCC----CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHH---HHHHH
T ss_conf 99998437888648832888----887899999999998198689995886766445665556668746406---78999
Q ss_pred HHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCCCEEEECC-CCCHHHHHHHHHHHHC
Q ss_conf 467876667388-753025777789989888742-0352344122-0001243999999871
Q gi|254781167|r 176 YDIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVDGVMIGRA-AYKNSAMLTTVDEYFS 234 (322)
Q Consensus 176 ~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRg-a~~~P~if~~I~~~l~ 234 (322)
-+.++.+.+... .+|||+.|||.|.+||.+.+. |+|-|+|..| +|.-|.+..+|...+.
T Consensus 272 ~~~v~~~~~~~~~~~pIIgvGGI~s~~da~~~i~aGAslVQlyTgliy~GP~lv~~I~~~L~ 333 (336)
T PRK05286 272 TEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLA 333 (336)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999973999709998998999999999986996887416787219079999999999
No 29
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.28 E-value=1.2e-10 Score=98.40 Aligned_cols=228 Identities=19% Similarity=0.263 Sum_probs=154.2
Q ss_pred CCCHHHHHHH-HHHCCCEEEECCCCCCH--HHHC-------CCH-----HHHH-HCCCCCCCEEEEEECC----------
Q ss_conf 8607899999-98289829981703324--7760-------897-----8983-0274578469998269----------
Q gi|254781167|r 4 WTDRHYRFFA-RLLTNNALLYTEMIVAD--AILR-------GDK-----KNIL-GFSTQEKPLALQIGGA---------- 57 (322)
Q Consensus 4 ~Td~~fR~l~-r~~~~~~~~~TEmi~a~--~l~~-------~~~-----~~~~-~~~~~e~p~~~Ql~g~---------- 57 (322)
+||....... |--||.++..||-+... +-.. .+. +++. ..+.....+++||+-.
T Consensus 35 ~t~~~~~yy~~rA~GG~GlIi~e~~~V~~~g~~~~~~~~i~~d~~i~~~~~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~ 114 (337)
T PRK13523 35 VTNFHLIHYGTRAAGQVGLIIVEATAVTPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDI 114 (337)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99999999999976897299983588662214799875566277899999999999755886887500177556789981
Q ss_pred -------------C------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------9------------8999998875310453777442564---------13677666889999855899
Q gi|254781167|r 58 -------------D------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLNPDI 103 (322)
Q Consensus 58 -------------~------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~p~~ 103 (322)
. .+.|++||+.+.+.|||+|+|..+= |.-.--.-.+|..+=..-..
T Consensus 115 ~aPS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf 194 (337)
T PRK13523 115 VAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAKRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRF 194 (337)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 07778867889998864999999999999999999999849998998135435899847923248958558888999889
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCC----CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCCHHHH
Q ss_conf 999999985027906999861134566----53220145543200012201210013566402577421227-6610467
Q gi|254781167|r 104 VGDCIAAMCKALSIPVTVKCRIGVDDQ----IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKI-PNLDYDI 178 (322)
Q Consensus 104 ~~~iv~~~~~~~~~pvsvK~RlG~~~~----~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~-~~~~~~~ 178 (322)
+.+++++++++.+.||.| |+.-++. .+.+...++++.++++|++.+.|-.-. ..+.. ... +...-.+
T Consensus 195 ~lEii~aVr~~~~~~v~v--Ris~~d~~~gG~~~~d~~~~~~~l~~~GvD~i~vs~G~-----~~~~~-~~~~~g~~~~~ 266 (337)
T PRK13523 195 LREIIDAVKEVWDGPLFV--RISASDYHPDGLTVQDYVQYAKWMKEQGVDLIDVSSGA-----VVPAR-IDVYPGYQVPF 266 (337)
T ss_pred HHHHHHHHHHHCCCCEEE--EECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-----CCCCC-CCCCCCCCHHH
T ss_conf 999999999865886399--93365557899898999999999997499989957885-----54776-77787533489
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 876667388753025777789989888742-0-3523441220001243999999871998888
Q gi|254781167|r 179 VYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240 (322)
Q Consensus 179 i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~~l~~~~~~~ 240 (322)
...+++.+ ++|+++.|.|++++.|.+.++ | +|-|++||..+.||.+-..+.+.+..+-..+
T Consensus 267 a~~ik~~~-~ipvi~vG~i~~~~~ae~~l~~G~aD~V~~gR~~iadPd~p~kaa~~~~~ei~~~ 329 (337)
T PRK13523 267 AEHIKEHA-NIATGAVGLITTGAQAEEILNNNRADLIFIGRELLRNPYFPRIAANELGFEIEEP 329 (337)
T ss_pred HHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
T ss_conf 99999876-9709998386999999999987994799989999989109999997669999998
No 30
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.22 E-value=4.4e-11 Score=101.54 Aligned_cols=165 Identities=21% Similarity=0.252 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHCCCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEC--C
Q ss_conf 99999887531045377744256---------413677666889999855899999999985027--9069998611--3
Q gi|254781167|r 60 SKLVEAAKIVEDFGYNEINLNVG---------CPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRI--G 126 (322)
Q Consensus 60 ~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~Rl--G 126 (322)
+.+++||+.+.+.|||+|+|..+ .|.-.--.-.+|..+-..-..+.+|++++++++ +.||.||+-. +
T Consensus 154 ~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~ 233 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW 233 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99999999999839999986313747999836941167778679978999889999999999983998870689645235
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 45665322014554320001220121001356640257742122766-10467876667388753025777789989888
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
.++..+.+...++++.+++.|++.|.|-.. +..+......++ ...++...+++.+ .+|++.+|+|.+++.|.+
T Consensus 234 ~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G-----~~~~~~~~~~~~~~~~~~a~~ik~~~-~ipvi~~G~i~~p~~ae~ 307 (336)
T cd02932 234 VEGGWDLEDSVELAKALKELGVDLIDVSSG-----GNSPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEA 307 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCC-----CCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHH
T ss_conf 789989999999999999759978995589-----87766667778642679999999878-983999799899999999
Q ss_pred HHH-C-CCCEEEECCCCCHHHHHHHHH
Q ss_conf 742-0-352344122000124399999
Q gi|254781167|r 206 ILP-S-VDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 206 ~l~-~-~dgvMigRga~~~P~if~~I~ 230 (322)
.++ | +|-|.+||..+.||.+-..+.
T Consensus 308 ~l~~G~~DlV~~gR~~iadPdlp~kaA 334 (336)
T cd02932 308 ILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred HHHCCCCEEHHHHHHHHHCCCHHHHHH
T ss_conf 998799400686799997933999986
No 31
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.15 E-value=1.1e-10 Score=98.53 Aligned_cols=226 Identities=15% Similarity=0.238 Sum_probs=146.4
Q ss_pred CCCHHHHHHHH-HHCCCEEEECCCCCCHH--H----------HCCCH-----HHHH-HCCCCCCCEEEEEE--CC-----
Q ss_conf 86078999999-82898299817033247--7----------60897-----8983-02745784699982--69-----
Q gi|254781167|r 4 WTDRHYRFFAR-LLTNNALLYTEMIVADA--I----------LRGDK-----KNIL-GFSTQEKPLALQIG--GA----- 57 (322)
Q Consensus 4 ~Td~~fR~l~r-~~~~~~~~~TEmi~a~~--l----------~~~~~-----~~~~-~~~~~e~p~~~Ql~--g~----- 57 (322)
+||.......+ --||.++..||-+.... . ++.+. +++. ..+.....+.+||+ |.
T Consensus 33 ~t~~~~~yy~~rA~gG~glIit~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~k~l~d~vh~~g~~i~~QL~H~Gr~~~~~ 112 (338)
T cd04733 33 PTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAG 112 (338)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 99999999998862783488970389867767799988888879999999999999999856986999515654124500
Q ss_pred ----------------------C------------HHHHHHHHHHHHCCCCCEEEECCCC-------CHHHHH--HHHHH
Q ss_conf ----------------------9------------8999998875310453777442564-------136776--66889
Q gi|254781167|r 58 ----------------------D------------ISKLVEAAKIVEDFGYNEINLNVGC-------PSARVH--EGSFG 94 (322)
Q Consensus 58 ----------------------~------------p~~~~~aa~~~~~~g~~~idlN~GC-------P~~~v~--~~g~G 94 (322)
. .+.+++||+.+.+.|||+|+|..+= =+|..- .-.+|
T Consensus 113 ~~~~~~~~s~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYG 192 (338)
T cd04733 113 LNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYG 192 (338)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 07898887655676655557898864899999999999999999999839998998236554899862987689968579
Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEC--CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 999855899999999985027--9069998611--3456653220145543200012201210013566402-5774212
Q gi|254781167|r 95 ACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRI--GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKG-LSPKDNR 169 (322)
Q Consensus 95 aaLl~~p~~~~~iv~~~~~~~--~~pvsvK~Rl--G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g-~s~~~~~ 169 (322)
.++-..-..+.+|++++++++ +.||.+|+=. +++...+.+...++++.+++.|+|.+.|-+.+-.... ..+....
T Consensus 193 GS~ENR~Rf~lEii~avr~~vg~d~~v~~Ris~~d~~~~G~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~ 272 (338)
T cd04733 193 GSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKES 272 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 89889988999999999997199886999845354247999989999999999876998899468854573224776544
Q ss_pred CCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 276--610467876667388753025777789989888742--0352344122000124399999
Q gi|254781167|r 170 KIP--NLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 170 ~~~--~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~ 230 (322)
... ....++...+++.+ ++|++.+|+|.+++.|.+.++ .+|-|.+||..+.||-+...+.
T Consensus 273 ~~~~~~~~~~~a~~ik~~~-~~Pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~iadPdl~~k~~ 336 (338)
T cd04733 273 TIAREAYFLEFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL 336 (338)
T ss_pred CCCCCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHH
T ss_conf 4567510599999999984-997999899899999999998799510898899997905999986
No 32
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.15 E-value=9.9e-11 Score=98.94 Aligned_cols=225 Identities=14% Similarity=0.219 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHH-HCCCEEEECCCCCCHH--------H----HCCCH------HHHH-HCCCCCCCEEEEEECC------
Q ss_conf 860789999998-2898299817033247--------7----60897------8983-0274578469998269------
Q gi|254781167|r 4 WTDRHYRFFARL-LTNNALLYTEMIVADA--------I----LRGDK------KNIL-GFSTQEKPLALQIGGA------ 57 (322)
Q Consensus 4 ~Td~~fR~l~r~-~~~~~~~~TEmi~a~~--------l----~~~~~------~~~~-~~~~~e~p~~~Ql~g~------ 57 (322)
+||.......++ -|+.++..||.+.... . ..... +++. ..+.....+++||+..
T Consensus 33 ~t~~~~~yy~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~~~vH~~G~~i~~QL~h~~gr~~~ 112 (382)
T cd02931 33 FNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTERVHAYGTKIFLQLTAGFGRVCI 112 (382)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 89999999999966586478952412666656689888787776859999999999999985489068630665466457
Q ss_pred ------C-----------------------------HHHHHHHHHHHHCCCCCEEEECC---C-CCH----HHH--HHHH
Q ss_conf ------9-----------------------------89999988753104537774425---6-413----677--6668
Q gi|254781167|r 58 ------D-----------------------------ISKLVEAAKIVEDFGYNEINLNV---G-CPS----ARV--HEGS 92 (322)
Q Consensus 58 ------~-----------------------------p~~~~~aa~~~~~~g~~~idlN~---G-CP~----~~v--~~~g 92 (322)
. .+.+++||+.+.+.|||+|.|.. | -.+ |.. -.-.
T Consensus 113 ~~~~~~~~~~~pS~~~~~~~~~~~~r~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDe 192 (382)
T cd02931 113 PGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDK 192 (382)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 65478998578865644568887777689999999999999999999984999899624530358998548735898864
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEC-----CCCCC-----------CCCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 89999855899999999985027--9069998611-----34566-----------532201455432000122012100
Q gi|254781167|r 93 FGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRI-----GVDDQ-----------IPAVALRNLVKSIKKSGVNGIWIH 154 (322)
Q Consensus 93 ~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~Rl-----G~~~~-----------~~~~~~~~~~~~~~~~g~~~itiH 154 (322)
+|.+|=..-..+.++++++++++ +.||.+|+=. ||.+. .+.+..+++++.++++|++.+-+.
T Consensus 193 YGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~~~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs 272 (382)
T cd02931 193 YGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 58987885618999999999970988738999656334566545788577788876359999999999998398889647
Q ss_pred HHHHH-HHCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHH
Q ss_conf 13566-40257742122766-10467876667388753025777789989888742-0-352344122000124399999
Q gi|254781167|r 155 ARKAI-LKGLSPKDNRKIPN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 155 ~Rt~~-~~g~s~~~~~~~~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~ 230 (322)
+.+-. .....|. .+.++ ....+.+++|+.+ ++|++..|+|.++++|.+.+. | +|-|.+||..+.||.+...++
T Consensus 273 ~g~~~~~~~~~~~--~~~~~g~~~~~a~~ik~~~-~iPvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~~iadP~~v~K~~ 349 (382)
T cd02931 273 AGSYDAWYWNHPP--MYQKKGMYLPYCKALKEVV-DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred CCCCCCHHCCCCC--CCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 7742110103797--5467631489999999873-998899689699999999998699654362289886935999998
Q ss_pred H
Q ss_conf 9
Q gi|254781167|r 231 E 231 (322)
Q Consensus 231 ~ 231 (322)
+
T Consensus 350 ~ 350 (382)
T cd02931 350 R 350 (382)
T ss_pred C
T ss_conf 2
No 33
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=99.14 E-value=8.8e-10 Score=91.92 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=143.1
Q ss_pred CCCHHHHHHHHH-HCCCEEEECCCCCCH--HHHCC------CHH------HHH-HCCCCCCCEEEEEE--CCC-------
Q ss_conf 860789999998-289829981703324--77608------978------983-02745784699982--699-------
Q gi|254781167|r 4 WTDRHYRFFARL-LTNNALLYTEMIVAD--AILRG------DKK------NIL-GFSTQEKPLALQIG--GAD------- 58 (322)
Q Consensus 4 ~Td~~fR~l~r~-~~~~~~~~TEmi~a~--~l~~~------~~~------~~~-~~~~~e~p~~~Ql~--g~~------- 58 (322)
.|+...+...+. -||.++..||-+... +..+. +.. ++. ..+.....+++||+ |..
T Consensus 33 ~t~~~~~~y~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~i~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~ 112 (336)
T pfam00724 33 VPERLAEYYSQRAQGGGTLIITEAVFVDPKGGGFDNQPGLWDDEQVEGWKKLTEAVHENGSKIGVQLWHLGREAPPEYLE 112 (336)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99999999999964697489968717882005799987467689999999999999855984999703577768823378
Q ss_pred -----------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHH
Q ss_conf -----------------------------8999998875310453777442564---------13677666889999855
Q gi|254781167|r 59 -----------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLN 100 (322)
Q Consensus 59 -----------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~ 100 (322)
.+.++.||+.+.+.|||+|.|+.+= |.-.--.-.+|..+=..
T Consensus 113 ~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR 192 (336)
T pfam00724 113 DLGLRPSDPSALPASIKVRELTKEEIKEIIQEFVQAAKRAVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENR 192 (336)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 88888878766788988876999999999999999999999829998996142678999862876588977678898897
Q ss_pred HHHHHHHHHHHHCCCC--EEEEEEEECCCCCCC----CCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCC--CCCCCC
Q ss_conf 8999999999850279--069998611345665----3220145543200012201210-013566402577--421227
Q gi|254781167|r 101 PDIVGDCIAAMCKALS--IPVTVKCRIGVDDQI----PAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSP--KDNRKI 171 (322)
Q Consensus 101 p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~~~----~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~--~~~~~~ 171 (322)
...+.+|+++++++++ .||.||+- +.|... ..+....+++.+++.|++.+.+ ++.-. ....+ ....+.
T Consensus 193 ~Rf~~eIi~aIR~~vg~d~~i~vRis-~~d~~~~g~~~~e~~~~~~~~~~~~g~d~~~~~~~~~~--~~~~~~~~~~~~~ 269 (336)
T pfam00724 193 ARFPLEVVDAVKEAVGEDRPIGYRLS-PDDVFEGGLTGAETLAQFAYAAGELGVRVLDGTRLAYI--HAIEPRVTGPFPV 269 (336)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEE--ECCCCCCCCCCCC
T ss_conf 54899999999997287766426746-52246899884268999999999838775642766223--2024433578775
Q ss_pred CC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 66-10467876667388753025777789989888742-0-3523441220001243999999
Q gi|254781167|r 172 PN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 172 ~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
.. ........+++.+ .+|++.+|+|++++.+.+.++ | ||.|.+||..+.||.+...+.+
T Consensus 270 ~~~~~~~~~~~~k~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~ 331 (336)
T pfam00724 270 ETGQQVENNEFIKKVW-KGPVITVGRINDPEFAAEIVEEGRADLVAMGRPFLADPDLVKKAKE 331 (336)
T ss_pred CCCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCHHHHHHHHC
T ss_conf 6312478999999876-9859996999989999999987994436866999979139999980
No 34
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.08 E-value=2.8e-10 Score=95.60 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=146.2
Q ss_pred CCCHHHHHHHH-HHCCCEEEECCCCCC--HHHHCCC------H------HHHH-HCCCCCCCEEEEEECC----------
Q ss_conf 86078999999-828982998170332--4776089------7------8983-0274578469998269----------
Q gi|254781167|r 4 WTDRHYRFFAR-LLTNNALLYTEMIVA--DAILRGD------K------KNIL-GFSTQEKPLALQIGGA---------- 57 (322)
Q Consensus 4 ~Td~~fR~l~r-~~~~~~~~~TEmi~a--~~l~~~~------~------~~~~-~~~~~e~p~~~Ql~g~---------- 57 (322)
.|+.......+ --||.+++.||-+.. .+....+ . +++. ..|.....+++||+-.
T Consensus 31 ~~~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~ 110 (343)
T cd04734 31 PSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSW 110 (343)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99999999999967898379970067646556899987668999999999999999735881898711577666766799
Q ss_pred ----------------C------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHH
Q ss_conf ----------------9------------8999998875310453777442564---------13677666889999855
Q gi|254781167|r 58 ----------------D------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLN 100 (322)
Q Consensus 58 ----------------~------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~ 100 (322)
. .+.+++||+.+.+.|||+|.|..+= |.-.--.-.+|.++=..
T Consensus 111 ~~~~~pS~~~~~~~~~~p~~mt~eeI~~ii~~f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR 190 (343)
T cd04734 111 LPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENR 190 (343)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 86268888866567987944899999999999999999999739988984457774699846985589967679888999
Q ss_pred HHHHHHHHHHHHCCC--CEEEEEEEECCCCC---CCCCCCHHHHHHHHCCCC-CCHHHHHHHHHHH-HCCCC-CCCCCCC
Q ss_conf 899999999985027--90699986113456---653220145543200012-2012100135664-02577-4212276
Q gi|254781167|r 101 PDIVGDCIAAMCKAL--SIPVTVKCRIGVDD---QIPAVALRNLVKSIKKSG-VNGIWIHARKAIL-KGLSP-KDNRKIP 172 (322)
Q Consensus 101 p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~---~~~~~~~~~~~~~~~~~g-~~~itiH~Rt~~~-~g~s~-~~~~~~~ 172 (322)
-..+.+|++++++++ +.||.+|+-. .+. ..+.++..++++.+++.| +|.|.|-+-+-.. .+... ...++.+
T Consensus 191 ~Rf~~EIi~~Ir~~vg~~f~i~~Ris~-~~~~~~g~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~~p~~~~~ 269 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISG-DEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMP 269 (343)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 899999999999981987761588676-2356898998999999999996699768996567543322211006876677
Q ss_pred CC-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 61-0467876667388753025777789989888742--03523441220001243999999
Q gi|254781167|r 173 NL-DYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 173 ~~-~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~ 231 (322)
+. ..++...+|+.+ .+|++++|+|.+++++.+.++ .||.|.+||..+.||.+...+.+
T Consensus 270 ~g~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ladPd~v~k~~~ 330 (343)
T cd04734 270 PGPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred CCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHC
T ss_conf 643488999999972-9859997998999999999987996216978999978119999976
No 35
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.04 E-value=8.6e-10 Score=91.98 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=143.3
Q ss_pred HCCCEEEECCCCCCHH--HHCC------CH------HHHH-HCCCCCCCEEEEEECCC----------------------
Q ss_conf 2898299817033247--7608------97------8983-02745784699982699----------------------
Q gi|254781167|r 16 LTNNALLYTEMIVADA--ILRG------DK------KNIL-GFSTQEKPLALQIGGAD---------------------- 58 (322)
Q Consensus 16 ~~~~~~~~TEmi~a~~--l~~~------~~------~~~~-~~~~~e~p~~~Ql~g~~---------------------- 58 (322)
-||.++..||.+.... .... +. +++. ..+.....+++||+-.-
T Consensus 44 ~gG~glIi~e~~~v~~~g~~~~~~~~i~~d~~i~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~ 123 (353)
T cd02930 44 RGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFT 123 (353)
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67863489762898804176999763279999999999999999769979997314786668988818987778889998
Q ss_pred H------------HHHHHHHHHHHCCCCCEEEECCCCC-------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 8------------9999988753104537774425641-------3677--6668899998558999999999850279-
Q gi|254781167|r 59 I------------SKLVEAAKIVEDFGYNEINLNVGCP-------SARV--HEGSFGACLMLNPDIVGDCIAAMCKALS- 116 (322)
Q Consensus 59 p------------~~~~~aa~~~~~~g~~~idlN~GCP-------~~~v--~~~g~GaaLl~~p~~~~~iv~~~~~~~~- 116 (322)
| +.+++||+.+.+.|||+|.|..+== +|.. -.-.+|..+=..-..+.+||++++++++
T Consensus 124 p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~ 203 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86599999999999999999999982999899625676148773387547885745798788879999999999997099
Q ss_pred -EEEEEEEECC--CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCC
Q ss_conf -0699986113--45665322014554320001220121001356640257742122766104-6787666738875302
Q gi|254781167|r 117 -IPVTVKCRIG--VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDY-DIVYEIKKENPDLFIG 192 (322)
Q Consensus 117 -~pvsvK~RlG--~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~-~~i~~l~~~~~~~~i~ 192 (322)
.||.+|+=.- +++..+.+...++++.++++|+|.+.|-.- .+...-|.-....++..| +...++++.+ ++|++
T Consensus 204 d~~v~~Ris~~d~~~~G~~~~e~~~~~~~l~~~GvD~i~vs~G--~~~~~~~~~~~~~p~g~~~~~a~~ir~~~-~~Pvi 280 (353)
T cd02930 204 DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIG--WHEARVPTIATSVPRGAFAWATAKLKRAV-DIPVI 280 (353)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEE
T ss_conf 8749997360126899989999999999999819999996377--44466875334577236699999988754-83489
Q ss_pred CCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 5777789989888742-0-3523441220001243999999
Q gi|254781167|r 193 LNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 193 ~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
..|.|.+++.|...+. | +|-|.+||..+.||.+...+.+
T Consensus 281 ~~G~i~~p~~ae~~l~~g~aD~V~~gR~liadPdl~~K~~~ 321 (353)
T cd02930 281 ASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred ECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHC
T ss_conf 65997989999999987996247840998769369999981
No 36
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.98 E-value=2e-09 Score=89.23 Aligned_cols=215 Identities=16% Similarity=0.214 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHCCCEEEECCCCCC--HHHHCC------CH------HHHH-HCCCCCCCEEEEEECC------------
Q ss_conf 6078999999828982998170332--477608------97------8983-0274578469998269------------
Q gi|254781167|r 5 TDRHYRFFARLLTNNALLYTEMIVA--DAILRG------DK------KNIL-GFSTQEKPLALQIGGA------------ 57 (322)
Q Consensus 5 Td~~fR~l~r~~~~~~~~~TEmi~a--~~l~~~------~~------~~~~-~~~~~e~p~~~Ql~g~------------ 57 (322)
||...+...++- +.++..||-+.. .+..+. +. +++. ..+...-.+++||+-.
T Consensus 34 t~~~~~yy~~rA-g~GlIi~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~vh~~Ga~~~~QL~H~Gr~~~~~~~~~g 112 (338)
T cd02933 34 TDLMAEYYAQRA-SAGLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGG 112 (338)
T ss_pred CHHHHHHHHHHC-CCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCC
T ss_conf 999999999858-8557997236975420469998732239999999999999985589558875026766786355689
Q ss_pred -C------------------------H------------HHHHHHHHHHHCCCCCEEEECCC---------CCHHHHHHH
Q ss_conf -9------------------------8------------99999887531045377744256---------413677666
Q gi|254781167|r 58 -D------------------------I------------SKLVEAAKIVEDFGYNEINLNVG---------CPSARVHEG 91 (322)
Q Consensus 58 -~------------------------p------------~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v~~~ 91 (322)
. | +.++.||+.+.+.|||+|.|..| .|.-.--.-
T Consensus 113 ~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtD 192 (338)
T cd02933 113 APPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTD 192 (338)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCC
T ss_conf 96053688877877545566668888855899999999999999999999839999998224406899853853268989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEE-EEEEEE-----CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 889999855899999999985027906-999861-----13456653220145543200012201210013566402577
Q gi|254781167|r 92 SFGACLMLNPDIVGDCIAAMCKALSIP-VTVKCR-----IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSP 165 (322)
Q Consensus 92 g~GaaLl~~p~~~~~iv~~~~~~~~~p-vsvK~R-----lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~ 165 (322)
.+|.++-..-..+.+++++++++++-. |+|++= .|....+..+....+++.+++.|++.+.|- ..... +
T Consensus 193 eYGGS~eNR~Rf~~Eii~aIR~~vg~d~i~vRlSp~~~~~g~~~~~~~~~~~~~~~~l~~~gid~~~v~--~~~~~---~ 267 (338)
T cd02933 193 EYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLV--EPRVA---G 267 (338)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCC---C
T ss_conf 789998999899999999999972987089996576676887888779999999999998599889972--68777---7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 4212276610467876667388753025777789989888742-0-3523441220001243999999
Q gi|254781167|r 166 KDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 166 ~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
.+. ....+....+++.+ ..|++..|++ +++.|.+.+. | ||-|.+||..+.||-+...+++
T Consensus 268 ---~~~-~~~~~~~~~ir~~~-~~pvi~~G~i-~~~~ae~~l~~G~~D~V~~gR~liaDP~~~~K~~~ 329 (338)
T cd02933 268 ---NPE-DQPPDFLDFLRKAF-KGPLIAAGGY-DAESAEAALADGKADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred ---CCC-CCCHHHHHHHHHHC-CCCEEEECCC-CHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHC
T ss_conf ---777-76577999999986-9979996998-99999999987996036852999879139999963
No 37
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.97 E-value=3.2e-09 Score=87.79 Aligned_cols=209 Identities=12% Similarity=0.099 Sum_probs=135.6
Q ss_pred HCCCEEEECCCCCCH--HH--------HCCCH-----HHHH-HCCCCCCCEEEEEECCC---------------------
Q ss_conf 289829981703324--77--------60897-----8983-02745784699982699---------------------
Q gi|254781167|r 16 LTNNALLYTEMIVAD--AI--------LRGDK-----KNIL-GFSTQEKPLALQIGGAD--------------------- 58 (322)
Q Consensus 16 ~~~~~~~~TEmi~a~--~l--------~~~~~-----~~~~-~~~~~e~p~~~Ql~g~~--------------------- 58 (322)
-||.++..||.++.. +- ++.+. +++. ..+.+...+.+||+=+-
T Consensus 49 ~GG~GlIite~~~V~~~~~~~~~~~~~l~~d~~i~~~k~l~d~vH~~G~~i~~QL~H~G~~~~~~~~~~~~~~pS~~~~~ 128 (370)
T cd02929 49 EGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSE 128 (370)
T ss_pred CCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66814999650486103045889887737989999999999999966996788533566777643468998786435556
Q ss_pred --------------------HHHHHHHHHHHHCCCCCEEEECCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------------------899999887531045377744256---------413677666889999855899999999
Q gi|254781167|r 59 --------------------ISKLVEAAKIVEDFGYNEINLNVG---------CPSARVHEGSFGACLMLNPDIVGDCIA 109 (322)
Q Consensus 59 --------------------p~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v~~~g~GaaLl~~p~~~~~iv~ 109 (322)
.+.+++||+.+.+.|||+|.|+.+ .|.-.--.-.+|..+=..-..+.++++
T Consensus 129 ~~~~~~~~~r~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~ 208 (370)
T cd02929 129 FPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLE 208 (370)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 67799987866899999999999999999999859898997711355999734774578777468988999899999999
Q ss_pred HHHCCC--CEEEEEEEECCCCC------CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHH
Q ss_conf 985027--90699986113456------653220145543200012201210013566402577421227661-046787
Q gi|254781167|r 110 AMCKAL--SIPVTVKCRIGVDD------QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNL-DYDIVY 180 (322)
Q Consensus 110 ~~~~~~--~~pvsvK~RlG~~~------~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~-~~~~i~ 180 (322)
++++++ +.||++|+- .++ ..+.+...++++.+.+. ++.+.|..-+-. ..+...++.++. .-++++
T Consensus 209 aVr~~vg~df~i~~R~s--~~~~~~~~g~~~~~~~~~~~~~~~~~-~d~~~vs~g~~~---~~~~~~~~~~~g~~~~~~~ 282 (370)
T cd02929 209 DTKDAVGDDCAVATRFS--VDELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWA---NDGEDSRFYPEGHQEPYIK 282 (370)
T ss_pred HHHHHHCCCCEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCC---CCCCCCCCCCCCCCHHHHH
T ss_conf 99997199875999989--41256889998889999999997365-797998855556---6567777678643659999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 6667388753025777789989888742-0-3523441220001243999999
Q gi|254781167|r 181 EIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 181 ~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
.+|+.+ .+|+++.|.|++++.|.+.+. | +|.|.+||..+.||.+...+++
T Consensus 283 ~ik~~~-~~Pvi~vG~i~~p~~ae~~l~~G~aD~V~~gR~llaDPd~~~K~~~ 334 (370)
T cd02929 283 FVKQVT-SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIRE 334 (370)
T ss_pred HHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHC
T ss_conf 999860-8808997897999999999987994264534798769539999980
No 38
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.97 E-value=1.8e-08 Score=82.22 Aligned_cols=226 Identities=16% Similarity=0.233 Sum_probs=154.9
Q ss_pred CCCHHHHHHH-HHHCCCEEEECCCCC--CHHHHC-------CCH-----HHHHHCC-C-CCCCEEEEEE--CC-------
Q ss_conf 8607899999-982898299817033--247760-------897-----8983027-4-5784699982--69-------
Q gi|254781167|r 4 WTDRHYRFFA-RLLTNNALLYTEMIV--ADAILR-------GDK-----KNILGFS-T-QEKPLALQIG--GA------- 57 (322)
Q Consensus 4 ~Td~~fR~l~-r~~~~~~~~~TEmi~--a~~l~~-------~~~-----~~~~~~~-~-~e~p~~~Ql~--g~------- 57 (322)
.||+++--+- |-.||.+|++|||+. ..+-+. ++. +++.++. . ..-++++||+ |.
T Consensus 434 ptd~Hl~Hyg~rA~gGaGLIi~EaTaVsp~GRitp~~~GLw~d~q~~~~krivd~vH~~~~a~i~iQL~HaGRKast~~~ 513 (770)
T PRK08255 434 PGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHAGRKGSTRLG 513 (770)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 98089999999970787879987677567657899887755989999999999999963698479872237878655578
Q ss_pred -----------------------C-----H------------HHHHHHHHHHHCCCCCEEEECCC---------CCHHHH
Q ss_conf -----------------------9-----8------------99999887531045377744256---------413677
Q gi|254781167|r 58 -----------------------D-----I------------SKLVEAAKIVEDFGYNEINLNVG---------CPSARV 88 (322)
Q Consensus 58 -----------------------~-----p------------~~~~~aa~~~~~~g~~~idlN~G---------CP~~~v 88 (322)
+ | +.|++||+...+.|||.|.|-++ .|...-
T Consensus 514 w~g~~~P~~~g~W~~vapS~ip~~~~~~~Pr~mt~~eI~~vv~~F~~AA~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~ 593 (770)
T PRK08255 514 WEGIDQPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDQFVAATRRAAEAGFDWLELHCAHGYLLSSFISPLTNQ 593 (770)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCC
T ss_conf 77788878768987248988875899988756899999999999999999999839998999523455588753864467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECC-C-CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 666889999855899999999985027--90699986113-4-5665322014554320001220121001356640257
Q gi|254781167|r 89 HEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRIG-V-DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLS 164 (322)
Q Consensus 89 ~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~RlG-~-~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s 164 (322)
-.-.+|..|-..-....+++++++++. +.|++|.+=.- | +...+.+..+++++.+.+.|+|.|.|.. .|.+
T Consensus 594 RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~vRiSatDw~~gG~t~edsv~la~~l~~~GvD~IdvSs-----Gg~~ 668 (770)
T PRK08255 594 RTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADMIDVSS-----GQVS 668 (770)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC-----CCCC
T ss_conf 75435788887778899999999986789886699985102568999999999999999974998999578-----8888
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 742122766-10467876667388753025777789989888742--035234412200012439999998719
Q gi|254781167|r 165 PKDNRKIPN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 165 ~~~~~~~~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~ 235 (322)
+.+.-..++ -.-.+..+||+.. .+++++.|.|++++.|...+. .+|-|++||..+.||.--.+..+.+.-
T Consensus 669 ~~~~p~~g~~yQvpfA~~Ir~e~-~i~t~AVG~I~~p~~Ae~Il~~GrADlValgR~~L~dP~W~l~aA~~lg~ 741 (770)
T PRK08255 669 KDEKPVYGRMYQTPFADRIRNEA-GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAARIGY 741 (770)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCHHHHHHHHCCC
T ss_conf 66778888765669999999875-99789961889999999999769988752477765199509999997599
No 39
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.94 E-value=2.3e-09 Score=88.90 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=137.8
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCC--CHHHHC-------CCH-----HHHH-HCCCCCCCEEEEEEC------------
Q ss_conf 8607899999982898299817033--247760-------897-----8983-027457846999826------------
Q gi|254781167|r 4 WTDRHYRFFARLLTNNALLYTEMIV--ADAILR-------GDK-----KNIL-GFSTQEKPLALQIGG------------ 56 (322)
Q Consensus 4 ~Td~~fR~l~r~~~~~~~~~TEmi~--a~~l~~-------~~~-----~~~~-~~~~~e~p~~~Ql~g------------ 56 (322)
+|+......-+.-+|.+++.||.+. ..+..+ .+. +++. ..|.....+++||+-
T Consensus 33 ~t~~~~~yy~~rAgG~GliIte~~~V~~~g~~~~~~~~i~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~ 112 (353)
T cd04735 33 ITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPG 112 (353)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCC
T ss_conf 99999999999839614999894888613257899876479999999999999998579918975113665466100789
Q ss_pred CC----------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHH
Q ss_conf 99----------------------------8999998875310453777442564---------1367766688999985
Q gi|254781167|r 57 AD----------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLML 99 (322)
Q Consensus 57 ~~----------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~ 99 (322)
.. .+.|++||+.+.+.|||+|.|..+= |.-.--.-.+|..+=.
T Consensus 113 ~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eN 192 (353)
T cd04735 113 GDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLEN 192 (353)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 98657777576778999886199999999999999999999983999899754657599985399889984736798899
Q ss_pred HHHHHHHHHHHHHCCCC------EEEEEEEECCCCC----CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58999999999850279------0699986113456----6532201455432000122012100135664025774212
Q gi|254781167|r 100 NPDIVGDCIAAMCKALS------IPVTVKCRIGVDD----QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR 169 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~------~pvsvK~RlG~~~----~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~ 169 (322)
.-..+.+|+++++++++ .||.+ |+.-++ ..+.+...++++.++++|++.|.|-...- . + .. .
T Consensus 193 R~Rf~~Eii~aIr~~vg~~~~~df~vgv--Ris~~e~~~~G~~~~e~~~~~~~l~~~gvD~l~vs~g~~--~--~-~~-~ 264 (353)
T cd04735 193 RMRFPLAVVKAVQEVIDKHADKDFILGY--RFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF--D--R-KS-R 264 (353)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEE--ECCHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC--C--C-CC-C
T ss_conf 9889999999999985400589733675--158654147999999999999999847998899603776--6--7-77-6
Q ss_pred CCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 27661046787666738-8753025777789989888742-03523441220001243999999
Q gi|254781167|r 170 KIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 170 ~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~ 231 (322)
..+...+.....+++.. ..+|++++|+|.+++.|.+.++ |+|-|.+||..+.||-+...+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~iPvi~~G~i~~~~~ae~~l~~gaD~V~~gR~liadPd~~~K~~~ 328 (353)
T cd04735 265 RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHC
T ss_conf 6777535589999999678980999899998999999998699829986999979319999985
No 40
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.81 E-value=2.3e-08 Score=81.48 Aligned_cols=160 Identities=13% Similarity=0.207 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-EEEEEE-CC-C
Q ss_conf 999998875310453777442564---------13677666889999855899999999985027906-999861-13-4
Q gi|254781167|r 60 SKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP-VTVKCR-IG-V 127 (322)
Q Consensus 60 ~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p-vsvK~R-lG-~ 127 (322)
+.|++||+.+.+.|||+|+|..+= |.-.--.-.+|.+|=.....+.+++++++++++-. |.+++- .+ +
T Consensus 159 ~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~avg~d~v~vRis~~~~~ 238 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999999839998997024736999738976678988789978999889999999999973987379997266565
Q ss_pred CC---C-CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 56---6-5322014554320001220121001356640257742122766104678766673887530257777899898
Q gi|254781167|r 128 DD---Q-IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQA 203 (322)
Q Consensus 128 ~~---~-~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a 203 (322)
+. . ........+++.+++.|++.+.+..- ..-...+....+..++|+.+ .+||++.|.+ |++.|
T Consensus 239 ~~~~~g~~~~~~~~~~~~~l~~~gv~~l~~s~p----------~~~~~~~~~~~~~~~ik~~v-~~PVi~~G~~-tpe~A 306 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP----------DWAGGEPYSDAFREKVRARF-HGPIIGAGAY-TAEKA 306 (362)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC----------CCCCCCCCCHHHHHHHHHHC-CCCEEECCCC-CHHHH
T ss_conf 666578876899999999998629749997268----------55689875199999999876-9978976899-99999
Q ss_pred HHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf 88742-0-3523441220001243999999
Q gi|254781167|r 204 LKILP-S-VDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 204 ~~~l~-~-~dgvMigRga~~~P~if~~I~~ 231 (322)
.+.+. | ||-|.+||..+.||-+...+++
T Consensus 307 e~~l~~G~aDlV~~gR~llADPd~~~K~~~ 336 (362)
T PRK10605 307 ETLIGKGLIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred HHHHHCCCCCEEEEHHHHHHCCCHHHHHHC
T ss_conf 999988998798100687759458999857
No 41
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.77 E-value=5.7e-08 Score=78.55 Aligned_cols=224 Identities=19% Similarity=0.253 Sum_probs=143.5
Q ss_pred CCCHHHHHHH-HHHCCCEEEECCCCCC--HHHHC-------CCH-----HHHH-HCCCCCCCEEEEEECC----------
Q ss_conf 8607899999-9828982998170332--47760-------897-----8983-0274578469998269----------
Q gi|254781167|r 4 WTDRHYRFFA-RLLTNNALLYTEMIVA--DAILR-------GDK-----KNIL-GFSTQEKPLALQIGGA---------- 57 (322)
Q Consensus 4 ~Td~~fR~l~-r~~~~~~~~~TEmi~a--~~l~~-------~~~-----~~~~-~~~~~e~p~~~Ql~g~---------- 57 (322)
.||+..+... |--||.+++.||.... .+-.+ .+. +++. ..+.....+++||+-.
T Consensus 37 pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~ 116 (363)
T COG1902 37 PTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPW 116 (363)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 88899999999864897779996674075546589986657866738899999999856995999822776133223567
Q ss_pred ------------------CH------------HHHHHHHHHHHCCCCCEEEECC---------CCCHHHHHHHHHHHHHH
Q ss_conf ------------------98------------9999988753104537774425---------64136776668899998
Q gi|254781167|r 58 ------------------DI------------SKLVEAAKIVEDFGYNEINLNV---------GCPSARVHEGSFGACLM 98 (322)
Q Consensus 58 ------------------~p------------~~~~~aa~~~~~~g~~~idlN~---------GCP~~~v~~~g~GaaLl 98 (322)
.| +.|++||+.+.+.|||+|+|-. =+|.-.--.-.+|.+|=
T Consensus 117 ~~~~vapS~~~~~~~~~~~pr~mt~eeI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlE 196 (363)
T COG1902 117 LPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLE 196 (363)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 87645777442566788888658999999999999999999998399989984044449998558755777776688589
Q ss_pred HHHHHHHHHHHHHHCCCCE--EEEEEEECC-C-CC-CCCCCCHHHHHHHHCCCC-CCHHHHH-HHHHHHHCCCCCCCCCC
Q ss_conf 5589999999998502790--699986113-4-56-653220145543200012-2012100-13566402577421227
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSI--PVTVKCRIG-V-DD-QIPAVALRNLVKSIKKSG-VNGIWIH-ARKAILKGLSPKDNRKI 171 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~--pvsvK~RlG-~-~~-~~~~~~~~~~~~~~~~~g-~~~itiH-~Rt~~~~g~s~~~~~~~ 171 (322)
..-.++.++|++++++++- ||.+++=.. | ++ ..+.+...++++.+++.| ++.|.+= +.. .+......
T Consensus 197 NR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~------~~~~~~~~ 270 (363)
T COG1902 197 NRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY------ERGGTITV 270 (363)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC------CCCCCCCC
T ss_conf 998899999999999729886699997745467788888999999999998558844799603644------57887444
Q ss_pred C-C-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 6-6-10467876667388753025777789989888742-0-3523441220001243999999871
Q gi|254781167|r 172 P-N-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 172 ~-~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
. + ..-.+...++... .+|++.+|.|++++.|...++ | +|=|-+||..+.||.+...+++...
T Consensus 271 ~~~~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~v~k~~~g~~ 336 (363)
T COG1902 271 SGPGYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGRE 336 (363)
T ss_pred CCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCHHHHHHCCCC
T ss_conf 66412478999998860-7877986897999999999982998888726366509208999973787
No 42
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.60 E-value=1.1e-07 Score=76.48 Aligned_cols=228 Identities=20% Similarity=0.258 Sum_probs=134.8
Q ss_pred CCHHHHHHH-HHHCCCEEEECCCCCCH---HHH-------CCCH-----HHHH-HCCCCCCCEEEEEE--CC--------
Q ss_conf 607899999-98289829981703324---776-------0897-----8983-02745784699982--69--------
Q gi|254781167|r 5 TDRHYRFFA-RLLTNNALLYTEMIVAD---AIL-------RGDK-----KNIL-GFSTQEKPLALQIG--GA-------- 57 (322)
Q Consensus 5 Td~~fR~l~-r~~~~~~~~~TEmi~a~---~l~-------~~~~-----~~~~-~~~~~e~p~~~Ql~--g~-------- 57 (322)
||......- |--||.+++.||-+... +.. +.+. +++. ..+.....+++||+ |.
T Consensus 32 t~~~~~yy~~rA~GG~Gliite~~~V~~~~~~~~~~~~~~~~d~~i~~~r~la~avH~~G~~~~~QL~H~G~~~~~~~~~ 111 (361)
T cd04747 32 GQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPP 111 (361)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
T ss_conf 99999999999768961079706710562135899877758999999999999999976997987000356666666788
Q ss_pred C------------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHH
Q ss_conf 9------------------------------8999998875310453777442564---------136776668899998
Q gi|254781167|r 58 D------------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLM 98 (322)
Q Consensus 58 ~------------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl 98 (322)
+ .+.|+.||+.+.+.|||+|.|.++= |.-.--.-.+|.+|=
T Consensus 112 ~~~~~~~~ps~~~~~~~~~~~~mt~eeI~~ii~~f~~AA~rA~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlE 191 (361)
T cd04747 112 FPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLA 191 (361)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 88988668756667889888879999999999999999999998399989951044658998358743889887899879
Q ss_pred HHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCC-------CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 55899999999985027--906999861134566-------532201455432000122012100135664025774212
Q gi|254781167|r 99 LNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQ-------IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR 169 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~-------~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~ 169 (322)
..-..+.++++++++++ +.||.+|+- .|+.. .+.+....+++.++++|+|.+.+-.++- ..|.
T Consensus 192 NR~Rf~~Eii~aVr~~vg~df~vg~Ris-~~~~~~~~~~~~~~~ee~~~~~~~l~~~GvD~i~~s~~~~----~~p~--- 263 (361)
T cd04747 192 ARSRFAAEVVKAIRAAVGPDFPIILRFS-QWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRF----WEPE--- 263 (361)
T ss_pred HHCCHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC----CCCC---
T ss_conf 8473699999999997299875999967-7657676655679999999999999977999898413445----6765---
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCC------------------CCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHH
Q ss_conf 27661046787666738875302577------------------7789989888742--035234412200012439999
Q gi|254781167|r 170 KIPNLDYDIVYEIKKENPDLFIGLNG------------------GLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTV 229 (322)
Q Consensus 170 ~~~~~~~~~i~~l~~~~~~~~i~~NG------------------di~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I 229 (322)
+.+ .+......+++.. ..|++.-| ...+.+++.+.++ .+|-|.+||..+.||.+...+
T Consensus 264 ~~~-~~~~~~~~~k~~~-~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~e~ae~~l~~G~~D~V~~gR~llaDP~~v~K~ 341 (361)
T cd04747 264 FEG-SELNLAGWTKKLT-GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred CCC-CCCCHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 677-7444889988862-89758644410356777775124544777999999999869941389759999754499999
Q ss_pred HHHHCCCCCCCCCCHH
Q ss_conf 9987199888899988
Q gi|254781167|r 230 DEYFSNPLTGSSPIKT 245 (322)
Q Consensus 230 ~~~l~~~~~~~~p~~~ 245 (322)
. .+......|+.+
T Consensus 342 ~---~Gr~~dIrP~~~ 354 (361)
T cd04747 342 R---EGRLDELIPFSR 354 (361)
T ss_pred H---CCCHHHCCCCCH
T ss_conf 8---599421268997
No 43
>KOG2334 consensus
Probab=98.60 E-value=8.5e-08 Score=77.28 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=123.2
Q ss_pred CCCCCCCEEEEEECCCHHH------HHHHHHHHHCCCC-------CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2745784699982699899------9998875310453-------77744256413677666889999855899999999
Q gi|254781167|r 43 FSTQEKPLALQIGGADISK------LVEAAKIVEDFGY-------NEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIA 109 (322)
Q Consensus 43 ~~~~e~p~~~Ql~g~~p~~------~~~aa~~~~~~g~-------~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~ 109 (322)
.+.+-+|-+.-.-|..|+. |.-|.+.=+.++- -.+++|+|||..+.+..+.+++++..+.....+.+
T Consensus 243 R~A~~n~SiF~~eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~ 322 (477)
T KOG2334 243 RAAESNPSIFREEGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYA 322 (477)
T ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHCCHHHHH
T ss_conf 86525986652068963899999999999998622463257799885665503835667653055999988860145877
Q ss_pred HHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 98502790699986113456653220145543200012201210013566402577421227661046787666738875
Q gi|254781167|r 110 AMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDL 189 (322)
Q Consensus 110 ~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~ 189 (322)
......+.|+ .|+|+- .+.....++++.+++.+ .+.||+|. .-.|..-|++|+-++.+....+ +
T Consensus 323 ~~~~el~~~~-~k~Rl~----~~~~d~~~~~~~le~~~--~l~i~~r~--------~f~r~~~pa~~~~~k~~l~~~~-~ 386 (477)
T KOG2334 323 TLKRELDTPV-CKKRLL----VSPADTVNLAERLEDLS--ALAIHGRK--------IFDRPTDPAKWDTPKMVLADLC-V 386 (477)
T ss_pred HHHHHHCCCC-CCCEEE----ECCCHHHHHHHHHHHCC--CHHHHHCC--------CCCCCCCCCCCCCHHHHHHHHH-H
T ss_conf 6477515611-000244----07300055766677501--02342011--------1256678767887878988743-5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 30257777899898887420352344122000124399
Q gi|254781167|r 190 FIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 190 ~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~ 227 (322)
++..||++.+..+- .-.++.++|.+||...|-.||.
T Consensus 387 ~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~ 422 (477)
T KOG2334 387 KTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWS 422 (477)
T ss_pred HHCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 31278760135566--6666677732521322123468
No 44
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.44 E-value=6.8e-06 Score=63.25 Aligned_cols=176 Identities=17% Similarity=0.176 Sum_probs=112.6
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHCCCH-HH-HH-HCCCCCCCEEEEEECCCHHHHH-HHHHHHHCCCCCEEEECCCCCHH
Q ss_conf 999982898299817033247760897-89-83-0274578469998269989999-98875310453777442564136
Q gi|254781167|r 11 FFARLLTNNALLYTEMIVADAILRGDK-KN-IL-GFSTQEKPLALQIGGADISKLV-EAAKIVEDFGYNEINLNVGCPSA 86 (322)
Q Consensus 11 ~l~r~~~~~~~~~TEmi~a~~l~~~~~-~~-~~-~~~~~e~p~~~Ql~g~~p~~~~-~aa~~~~~~g~~~idlN~GCP~~ 86 (322)
..+.+.|++. .-|............. ++ .. .....+.|+++|++-+.+.... ..++.+.+.|+|.|.++..||..
T Consensus 19 ~~~~~aGa~~-i~~~~~~~~~~~~~~~~~~~i~~~~~~t~~P~~v~~~~~~~~~~~~~~~~~~~~~g~d~v~i~~~~~~~ 97 (200)
T cd04722 19 KAAAEAGADA-IIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL 97 (200)
T ss_pred HHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9998688736-886488798246169999999999970799879984205666677599999998399989978999654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 77666889999855899999999985027-90699986113456653220145543200012201210013566402577
Q gi|254781167|r 87 RVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSP 165 (322)
Q Consensus 87 ~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~ 165 (322)
++...+.++.+++.. +++|.+|+-.-. ......+++.|++.+.+.+.... +.
T Consensus 98 --------------~~~~~~~~~~~~~~~~~~~vi~~~~~~~---------~~~~~~a~~~g~~~v~~~~~~~~----~~ 150 (200)
T cd04722 98 --------------AREDLELIRELREAVPDVKVVVKLSPTG---------ELAAAAAEEAGVDEVGLGNGGGG----GG 150 (200)
T ss_pred --------------CCCHHHHHHHHHHHCCCCEEEEECCCCC---------HHHHHHHHHCCCCEEEECCCCCC----CC
T ss_conf --------------3006899999998448964999689999---------99999999809979997087467----88
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 4212276610467876667388753025777789989888742-035234412
Q gi|254781167|r 166 KDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 166 ~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
.... .+ .....+..+++.. .+|+++-|+|.+.+++.+.+. |+|||.+|+
T Consensus 151 ~~~~-~~-~~~~~~~~~~~~~-~ipvi~~gGi~~~~~~~~~~~~gAdgv~vGs 200 (200)
T cd04722 151 GRDA-VP-IADLLLILAKRGS-KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCC-CC-HHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 8766-61-1689999999857-9998997587999999999985998898188
No 45
>KOG1799 consensus
Probab=98.34 E-value=5e-07 Score=71.63 Aligned_cols=160 Identities=22% Similarity=0.304 Sum_probs=112.3
Q ss_pred CCCCCEEEEEEC----CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 457846999826----9989999988753104537774425641367766688999985589999999998502790699
Q gi|254781167|r 45 TQEKPLALQIGG----ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 (322)
Q Consensus 45 ~~e~p~~~Ql~g----~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvs 120 (322)
..+.|.++-|.. .+-..-.+.+...++.|.|..++|+.||.. ...+|+|.|+-++|.++.++..=++..+.+|+.
T Consensus 199 k~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphg-m~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~ 277 (471)
T KOG1799 199 KNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHG-MCERGMGLALGQCPIVDCEVCGWINAKATIPMV 277 (471)
T ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCC-CCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 0148834634678988521368998656776344303205889888-765664101156805667776454421102100
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH---------------------HHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 98611345665322014554320001220121---------------------001356640257742122766104678
Q gi|254781167|r 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW---------------------IHARKAILKGLSPKDNRKIPNLDYDIV 179 (322)
Q Consensus 121 vK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it---------------------iH~Rt~~~~g~s~~~~~~~~~~~~~~i 179 (322)
-|+ .+|+....+.++...+.|+..|+ +.+|+ .+.|+|.+.-|.+. ...|
T Consensus 278 ~km------TPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~s-T~GG~S~~AvRPIA---l~~V 347 (471)
T KOG1799 278 SKM------TPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYS-TPGGYSYKAVRPIA---LAKV 347 (471)
T ss_pred CCC------CCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH---HHHH
T ss_conf 356------8986645432110376653203557688887544413368776645655-78874642203588---9999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHH-HC------CCCEEE
Q ss_conf 7666738875302577778998988874-20------352344
Q gi|254781167|r 180 YEIKKENPDLFIGLNGGLEDMSQALKIL-PS------VDGVMI 215 (322)
Q Consensus 180 ~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~------~dgvMi 215 (322)
-.+.+.....++-+-|+|.+.+|+...+ -| |.|||-
T Consensus 348 ~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~ 390 (471)
T KOG1799 348 MNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM 390 (471)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999986258612335743231235576507737545167775
No 46
>PRK03220 consensus
Probab=98.25 E-value=6.8e-06 Score=63.27 Aligned_cols=171 Identities=12% Similarity=0.191 Sum_probs=113.1
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-..+--+-+|++|+= ..+.. ++.+-+.|+|-|=|| ++..++|+++.++.+..-. -.+-
T Consensus 65 ~~I~~i~~~~~~pi~vGGGI-rs~e~-~~~ll~~GadkVvig--------------s~a~~~p~~~~~~~~~fG~-q~Iv 127 (257)
T PRK03220 65 DVVRRTAEQVFIPLTVGGGV-RTVED-VDSLLRAGADKVSVN--------------TAAIARPELLAELARRFGS-QCIV 127 (257)
T ss_pred HHHHHHHHCCCCCEEEECCC-CCHHH-HHHHHHCCCCEEECH--------------HHHHHCCHHHHHHHHHCCC-EEEE
T ss_conf 99999985069648984785-87999-999998197508720--------------6677594777899987098-6699
Q ss_pred EEEEEECC-----------------CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99986113-----------------4566532201455432000122012100135664025774212276610467876
Q gi|254781167|r 119 VTVKCRIG-----------------VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYE 181 (322)
Q Consensus 119 vsvK~RlG-----------------~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~ 181 (322)
+++-+|.+ |.. .+...+.++++.+++.|+..+.+.-=. ++=.-.| .|.+.+..
T Consensus 128 ~siD~k~~~~~~~~~~~g~~v~~~g~~~-~t~~~~~~~i~~~~~~g~geil~tdI~--------rDGt~~G-~d~~l~~~ 197 (257)
T PRK03220 128 LSVDARRVPVGSAPTPSGFEVTTHGGRR-GTGIDAVEWAARGAELGVGEILLNSMD--------ADGTKAG-FDLEMLRA 197 (257)
T ss_pred EEEEEEECCCCCCCCCCCEEEEECCCEE-ECCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHH
T ss_conf 9999886256774346874999728826-028759999999862698889999886--------8660237-89699999
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 667388753025777789989888742-03523441220001243999999871998
Q gi|254781167|r 182 IKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFSNPL 237 (322)
Q Consensus 182 l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~~~~ 237 (322)
+.+.. ++|+++.||+.+.+|..+.++ |+|||.+|+..+.+-+-+.++++++.+..
T Consensus 198 i~~~~-~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~~~s~~~~k~~l~~~~ 253 (257)
T PRK03220 198 VRAAV-TVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFGELTIGQVKAALAAAG 253 (257)
T ss_pred HHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 99748-999899878999999999997899799874687889988999999999875
No 47
>PRK02621 consensus
Probab=98.22 E-value=5.5e-06 Score=63.96 Aligned_cols=165 Identities=15% Similarity=0.240 Sum_probs=114.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-
Q ss_conf 7846999826998999998875310453777442564136776668899998558999999999850279069998611-
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI- 125 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl- 125 (322)
+-.+-+|++|+= ..+..+.+++ +.|+|-|=|| ++..+||+++.++.+..-. -.+-+++-.|-
T Consensus 72 ~~~ipi~vGGGI-rs~e~~~~ll-~~GadkVii~--------------s~a~~np~~~~~~~~~fG~-q~Iv~siD~k~~ 134 (254)
T PRK02621 72 QVFIPLTVGGGI-SSLEGIKELL-RAGADKVSLN--------------SAAVRDPDLVRQASDRFGS-QCIVVAIDARRR 134 (254)
T ss_pred HCCCCEEEECCE-EEHHHHHHHH-HCCCCEEEEC--------------CHHHHCCCHHHHHHHHCCC-CCEEEEEEEECC
T ss_conf 679858996335-3579999999-7499989998--------------8676473544556875698-433999995535
Q ss_pred -----CCC------CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf -----345------665322014554320001220121001356640257742122766104678766673887530257
Q gi|254781167|r 126 -----GVD------DQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 126 -----G~~------~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
||. .+.+.....++++.+++.|+..+.++-=. ++-.-.| .|.+.+..+.+.. .+|+++.
T Consensus 135 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~g~geil~tdI~--------~DGt~~G-~d~~l~~~i~~~~-~iPvi~s 204 (254)
T PRK02621 135 KPDNPGWDVYVRGGRENTGLDAVEWAEEVAERGAGEILLTSMD--------GDGTQAG-YDLELTRAIAEAV-EIPVIAS 204 (254)
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC-CCCEEEE
T ss_conf 3478862899668845577679999988776288969998880--------4797576-8869999999717-9979997
Q ss_pred CCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 77789989888742--035234412200012439999998719988
Q gi|254781167|r 195 GGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSNPLT 238 (322)
Q Consensus 195 Gdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~~~~ 238 (322)
||+.+.+|..+.+. +++||.+|+..+.+=.-+.++++++.....
T Consensus 205 GGi~s~edi~~~l~~~~v~gvivG~al~~~~~~l~e~K~~l~~~~i 250 (254)
T PRK02621 205 GGAGCCDHIAEALTEGKAEAALLASLLHYGQLTIAEIKADLLARGL 250 (254)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 7999999999999858981987757878899999999999997779
No 48
>KOG1436 consensus
Probab=98.18 E-value=3.3e-05 Score=58.19 Aligned_cols=179 Identities=17% Similarity=0.261 Sum_probs=110.5
Q ss_pred HHHHCCCCCCCEEEEEECCC-----HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98302745784699982699-----8999998875310453777442564136776668899998558999999999850
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGAD-----ISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCK 113 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~-----p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~ 113 (322)
+.....+.-.++++-+.-+. .....+-++...++ +|..-||..||.- .|--.|+.-..+.+.+..++.
T Consensus 170 r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNt------pGlr~lq~k~~L~~ll~~v~~ 242 (398)
T KOG1436 170 RQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNT------PGLRSLQKKSDLRKLLTKVVQ 242 (398)
T ss_pred HHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC-CCEEEEECCCCCC------CCHHHHHHHHHHHHHHHHHHH
T ss_conf 873178865321056234657745678899876512454-6658995569998------662655327789999999999
Q ss_pred C-------CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH-------------HCCCCCCCCCCCC
Q ss_conf 2-------7906999861134566532201455432000122012100135664-------------0257742122766
Q gi|254781167|r 114 A-------LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAIL-------------KGLSPKDNRKIPN 173 (322)
Q Consensus 114 ~-------~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~-------------~g~s~~~~~~~~~ 173 (322)
+ ...||-+|+-- +-+...+.+++..+.+..++.+.|-.-|... .|+|++ +..+
T Consensus 243 a~~~~~~~~~~pvl~kiap----DL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~---plk~ 315 (398)
T KOG1436 243 ARDKLPLGKKPPVLVKIAP----DLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGP---PLKP 315 (398)
T ss_pred HHHCCCCCCCCCEEEEECC----CHHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCC---CCCH
T ss_conf 8860456889865888565----24277898999999983756366138566247101016664356887898---6636
Q ss_pred CHHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECC-CCCHHHHHHHHHH
Q ss_conf 104678766673-8875302577778998988874-20352344122-0001243999999
Q gi|254781167|r 174 LDYDIVYEIKKE-NPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRA-AYKNSAMLTTVDE 231 (322)
Q Consensus 174 ~~~~~i~~l~~~-~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRg-a~~~P~if~~I~~ 231 (322)
..-+.++++.+. .+.||||+.|+|.|-+||.+.+ .|+.-|.|+.+ .+.-|-||.+|+.
T Consensus 316 ~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436 316 ISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 6899999999863688746841685654769999862713998888776267435889998
No 49
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.17 E-value=3e-05 Score=58.56 Aligned_cols=162 Identities=23% Similarity=0.301 Sum_probs=109.5
Q ss_pred HHCCCCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH----HHHHHH-------------------HH
Q ss_conf 3027457846999826-99899999887531045377744256413677----666889-------------------99
Q gi|254781167|r 41 LGFSTQEKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARV----HEGSFG-------------------AC 96 (322)
Q Consensus 41 ~~~~~~e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v----~~~g~G-------------------aa 96 (322)
.+..+...|.-.||+- .|.+......+.++..||+.|=|+.-+|+.-- .+.+++ +.
T Consensus 111 a~a~~~~~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~rd~r~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (344)
T cd02922 111 VDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGR 190 (344)
T ss_pred HHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98656898669998247767999999999998699889995678887752266650777788766543333446631667
Q ss_pred ---HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCC
Q ss_conf ---985589999999998502790699986113456653220145543200012201210--013566402577421227
Q gi|254781167|r 97 ---LMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKI 171 (322)
Q Consensus 97 ---Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~ 171 (322)
-..+|.+--+-++.+++..+.|+-+| |.= ..+=+..+.++|++.|.| ||=. |.-.
T Consensus 191 ~~~~~~~~~~tw~di~~lr~~~~~plivK---GIl-------~~~DA~~A~~~G~dgIiVSNHGGR----------qLD~ 250 (344)
T cd02922 191 AMSGFIDPTLTWDDIKWLRKHTKLPIVLK---GVQ-------TVEDAVLAAEYGVDGIVLSNHGGR----------QLDT 250 (344)
T ss_pred HHHHCCCCCCCHHHHHHHHHHCCCCEEEC---CCC-------CHHHHHHHHHCCCCEEEEECCCCC----------CCCC
T ss_conf 77750488899999999998669970100---257-------799999999659988997188621----------2578
Q ss_pred CCCHHHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 6610467876667----388753025777789989888742-0352344122000124399
Q gi|254781167|r 172 PNLDYDIVYEIKK----ENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 172 ~~~~~~~i~~l~~----~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
.++-.+...++++ -...++|+.-|||.+-.|+.+.+. |+|.||||| |+++.
T Consensus 251 ~~~~i~~Lp~I~~~~~av~~~~~v~~DgGiR~G~DV~KAlALGA~aV~iGR-----p~l~g 306 (344)
T cd02922 251 APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGR-----PFLYA 306 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECH-----HHHHH
T ss_conf 831899989999988985887089971885757899999976999897678-----99999
No 50
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.16 E-value=8.8e-06 Score=62.43 Aligned_cols=155 Identities=23% Similarity=0.396 Sum_probs=109.5
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
++.++-+|+.|+=- ++..+..++ +.|++.+-+ |++-.+||+++.++++.--+ .+-|++-+|.
T Consensus 72 ~~~~~~vQvGGGIR-s~~~v~~ll-~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~--rivv~lD~r~ 133 (241)
T COG0106 72 EATDVPVQVGGGIR-SLEDVEALL-DAGVARVII--------------GTAAVKNPDLVKELCEEYGD--RIVVALDARD 133 (241)
T ss_pred HHCCCCEEEECCCC-CHHHHHHHH-HCCCCEEEE--------------ECCEECCHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 85799778408767-899999999-879988998--------------03121699999999998598--2899997148
Q ss_pred ------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf ------34566532201455432000122012100135664025774212276610467876667388753025777789
Q gi|254781167|r 126 ------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLED 199 (322)
Q Consensus 126 ------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~ 199 (322)
||-+ .+...+.++++.+++.|+..+..|-=+ ++=.-.| .|++.+.++.+.+ ++|+++.|+|.|
T Consensus 134 g~vav~GW~e-~s~~~~~~l~~~~~~~g~~~ii~TdI~--------~DGtl~G-~n~~l~~~l~~~~-~ipviaSGGv~s 202 (241)
T COG0106 134 GKVAVSGWQE-DSGVELEELAKRLEEVGLAHILYTDIS--------RDGTLSG-PNVDLVKELAEAV-DIPVIASGGVSS 202 (241)
T ss_pred CCCCCCCCHH-CCCCCHHHHHHHHHHCCCCEEEEEECC--------CCCCCCC-CCHHHHHHHHHHH-CCCEEEECCCCC
T ss_conf 8532046101-256789999999985787769998514--------4664577-7879999999982-767898668687
Q ss_pred HHHHHHHHH--CCCCEEEECCCCCHHHHHHHH
Q ss_conf 989888742--035234412200012439999
Q gi|254781167|r 200 MSQALKILP--SVDGVMIGRAAYKNSAMLTTV 229 (322)
Q Consensus 200 ~~~a~~~l~--~~dgvMigRga~~~P~if~~I 229 (322)
.+|...... |+.|+-|||+.|..-+-+.+.
T Consensus 203 ~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea 234 (241)
T COG0106 203 LDDIKALKELSGVEGVIVGRALYEGKFTLEEA 234 (241)
T ss_pred HHHHHHHHHCCCCCEEEEEHHHHCCCCCHHHH
T ss_conf 99999998557972899866896489789999
No 51
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.05 E-value=4.9e-05 Score=56.91 Aligned_cols=171 Identities=12% Similarity=0.280 Sum_probs=112.4
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-..+--+-+|++|+ -..+..+.+++ +.|+|-|=|| ++..+||+++.++.+..-. -.+-
T Consensus 64 ~~I~~i~~~~~~pi~vGGG-Irs~e~~~~ll-~~GadkVvig--------------s~a~~~p~~i~~~~~~~G~-q~Iv 126 (253)
T PRK02083 64 DVVERVAEQVFIPLTVGGG-IRSVEDARRLL-RAGADKVSIN--------------SAAVADPELITELADRFGS-QCIV 126 (253)
T ss_pred HHHHHHHHHCCCCEEEECC-CCCHHHHHHHH-HCCCCEEEEC--------------CHHHHCCCHHHHHHHHCCC-EEEE
T ss_conf 9999999863987785176-21389876898-7798789999--------------8465385355788974698-3599
Q ss_pred EEEEEEC------------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9998611------------3456653220145543200012201210013566402577421227661046787666738
Q gi|254781167|r 119 VTVKCRI------------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN 186 (322)
Q Consensus 119 vsvK~Rl------------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~ 186 (322)
+++-+|- ||.+ .+...+.++++.+++.|+..+.+. -+. ++=.-.| .|.+.+..+.+..
T Consensus 127 ~siD~~~~~~~~~~~v~~~~~~~-~~~~~~~~~i~~~~~~g~geil~t---dI~-----rDG~~~G-~d~~l~~~i~~~~ 196 (253)
T PRK02083 127 VAIDAKRDGEPGRWEVFTHGGRK-PTGIDAVEWAKEVQELGAGEILLT---SMD-----QDGTKNG-YDLELTRAVRDAV 196 (253)
T ss_pred EEEEEEECCCCCEEEEEECCCCC-CCCCCHHHHHHHHHHCCCCEEEEE---EEC-----CCCCCCC-CCHHHHHHHHHHC
T ss_conf 99998873768718999807841-255239999999875698789999---885-----5586678-8999999999757
Q ss_pred CCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 875302577778998988874--203523441220001243999999871998
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNPL 237 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~~ 237 (322)
++|++++||+.+.+|..+.+ .++|||.+|+..+.+-.-..+++.++....
T Consensus 197 -~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~~~~~~~sl~~~k~~L~~~~ 248 (253)
T PRK02083 197 -SVPVIASGGAGNLEHFAEAFTEGGADAALAASVFHFGEITIGELKAYLAEQG 248 (253)
T ss_pred -CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHHHHHCC
T ss_conf -9999998899999999999986798099871277769999999999999878
No 52
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=98.05 E-value=7.2e-06 Score=63.06 Aligned_cols=147 Identities=22% Similarity=0.416 Sum_probs=102.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-------CE---
Q ss_conf 4699982699899999887531045377744256413677666889999855899999999985-027-------90---
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMC-KAL-------SI--- 117 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~-~~~-------~~--- 117 (322)
-+-+|++|+= =++..+.++++ .|++.+= .|++=++||+++.+++++.- +.+ +-
T Consensus 73 ~~~vQvGGGI-Rs~e~v~~ll~-~Gv~RVI--------------~GT~A~~~~~~v~~~~~~~g~~~i~V~lD~~~g~~G 136 (241)
T TIGR00007 73 GVPVQVGGGI-RSLEDVEKLLD-LGVDRVI--------------IGTAAVENPDLVKELLKEYGPERIVVSLDARDGEEG 136 (241)
T ss_pred CCCEEECCCC-CCHHHHHHHHH-CCCCEEE--------------EEEEEECCHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 8517981751-68899999997-3985799--------------733221086999999998489965999863148875
Q ss_pred --EEEEEEECCCCCCCCCCCHHHHHHHHCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf --699986113456653220145543200012-20121001356640257742122766104678766673887530257
Q gi|254781167|r 118 --PVTVKCRIGVDDQIPAVALRNLVKSIKKSG-VNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 118 --pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g-~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
-|.| -||.+ .+.....++++++++.| +..+.. |-+-+ +=.-.| .|.+...++.+++++++|++.
T Consensus 137 ~~~V~v---~GW~E-~s~~~~~~~~~~~~~~G~~~~ii~---TdI~~-----DGtl~G-~n~~~~~~~~~~~~~~~viaS 203 (241)
T TIGR00007 137 VKEVAV---KGWKE-KSEVSLEELAKRLEELGELEGIIY---TDISR-----DGTLSG-PNFELTKELVKALVNVPVIAS 203 (241)
T ss_pred EEEEEE---EEEEC-CCCCCHHHHHHHHHHCCCCCEEEE---EEEEC-----CCCEEC-CCCCHHHHHHHHHCCCEEEEE
T ss_conf 178887---40411-356279999999851586336899---75200-----672007-873288999987358418994
Q ss_pred CCCCCHHHHHHH-H--HCCCCEEEECCCCCHHH
Q ss_conf 777899898887-4--20352344122000124
Q gi|254781167|r 195 GGLEDMSQALKI-L--PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 195 Gdi~~~~~a~~~-l--~~~dgvMigRga~~~P~ 224 (322)
|+|.|.+|..+. - .|+.||-|||+.|.+=+
T Consensus 204 GGv~s~~D~~~L~~~~~G~~GvIvGkALY~g~i 236 (241)
T TIGR00007 204 GGVSSIDDLRALKEIELGVYGVIVGKALYEGKI 236 (241)
T ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf 265788999999971598327998621116888
No 53
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.05 E-value=9.1e-05 Score=54.94 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=88.7
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 9998875310453777442564136776668899998558--99999999985027906999861134566532201455
Q gi|254781167|r 62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP--DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNL 139 (322)
Q Consensus 62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p--~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~ 139 (322)
+.++-.+ .+.|+|.|-+-.-.- ..| +.+.++++.+++..+.++-.-|- + ++=
T Consensus 82 ~~ev~~l-~~aGadiIA~DaT~R--------------~RP~g~~l~~~i~~i~~~~~~l~MAD~s-------t----~ee 135 (219)
T cd04729 82 IEEVDAL-AAAGADIIALDATDR--------------PRPDGETLAELIKRIHEEYNCLLMADIS-------T----LEE 135 (219)
T ss_pred HHHHHHH-HHCCCCEEEEECCCC--------------CCCCCCCHHHHHHHHHHHHCCEEEEECC-------C----HHH
T ss_conf 9999999-985999999946788--------------7989978999999999986977887548-------8----999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEE
Q ss_conf 432000122012--100135664025774212276610467876667388753025777789989888742-03523441
Q gi|254781167|r 140 VKSIKKSGVNGI--WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIG 216 (322)
Q Consensus 140 ~~~~~~~g~~~i--tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMig 216 (322)
+..+.+.|+|.| |+.|=| +.... ...-||+.++++.+.+ ..|+++-|.|++++++.+.++ |+++|.||
T Consensus 136 ~~~A~~~G~D~vgTTL~GYT-------~~t~~-~~~PD~~lv~~l~~~~-~~pvIaEGri~tPe~a~~a~~~GA~aVVVG 206 (219)
T cd04729 136 ALNAAKLGFDIIGTTLSGYT-------EETAK-TEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHCCCCEEECCCCCCC-------CCCCC-CCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 99999849989970214567-------78788-9998789999999975-993997069899999999998399899989
Q ss_pred CCCCCHHHHH
Q ss_conf 2200012439
Q gi|254781167|r 217 RAAYKNSAML 226 (322)
Q Consensus 217 Rga~~~P~if 226 (322)
+|+-+|...
T Consensus 207 -sAITrP~~I 215 (219)
T cd04729 207 -SAITRPEHI 215 (219)
T ss_pred -CCCCCHHHH
T ss_conf -543888998
No 54
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.05 E-value=4.6e-05 Score=57.13 Aligned_cols=144 Identities=23% Similarity=0.267 Sum_probs=99.5
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 7846999826-998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
+.|...||+- .|++...+-.+.+++.||..|=+..-.|..-- + .+++ -++.+++..+.|+-+|
T Consensus 115 ~~~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~--R-------~~w~----~i~~l~~~~~~p~i~K--- 178 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGR--R-------LTWD----DLAWLRSQWKGPLILK--- 178 (299)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--C-------CCHH----HHHHHHHHCCCCEEEE---
T ss_conf 8984677643699999999999999859998999705898788--7-------9999----9999998669987997---
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHH
Q ss_conf 3456653220145543200012201210--013566402577421227661046787666738-8753025777789989
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQ 202 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~ 202 (322)
|. ...+=+..+.++|++.|.| ||= | |....|+-.+...++.+++ ..++|+.-|+|.+-.|
T Consensus 179 Gi-------~~~~DA~~a~~~G~dgI~VSNHGG---------R-qlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~D 241 (299)
T cd02809 179 GI-------LTPEDALRAVDAGADGIVVSNHGG---------R-QLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTD 241 (299)
T ss_pred CC-------CCHHHHHHHHHCCCCEEEECCCCC---------C-CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 27-------889999999985998899728873---------3-368887789999999998546728997188475368
Q ss_pred HHHHHH-CCCCEEEECCCCCHHHHHHH
Q ss_conf 888742-03523441220001243999
Q gi|254781167|r 203 ALKILP-SVDGVMIGRAAYKNSAMLTT 228 (322)
Q Consensus 203 a~~~l~-~~dgvMigRga~~~P~if~~ 228 (322)
+.+.+. |+|+||||| ||++.-
T Consensus 242 v~KAlaLGA~~V~iGR-----p~l~~l 263 (299)
T cd02809 242 VLKALALGADAVLIGR-----PFLYGL 263 (299)
T ss_pred HHHHHHCCCCEEEECH-----HHHHHH
T ss_conf 9999976998898778-----999998
No 55
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=98.03 E-value=5.3e-05 Score=56.67 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=98.2
Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 78469998269-98999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGGA-DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g~-~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
..|...||+-. |.+...+..+.++..||+.|=|.+-.|+.-.... -+++ .+-++.+++..+.||-+|
T Consensus 108 ~~~~~fQly~~~d~~~~~~~i~ra~~ag~~al~ltvD~~~~g~r~~-----d~r~----~~~i~~l~~~~~~PvivK--- 175 (301)
T pfam01070 108 GGPLWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTPVLGNRER-----DLRN----GDDLAWLRDQWKGPLVLK--- 175 (301)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-----CCCC----HHHHHHHHHHCCCCEEEE---
T ss_conf 9976899874588899999999999749997999726876577853-----2043----999999998669988998---
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
Q ss_conf 3456653220145543200012201210013566402577421227661046787666738-875302577778998988
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQAL 204 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~ 204 (322)
|. -+ .+=+..+.++|+++|.|-.. +++ |....++-.+...++.+.+ +.++|+..|+|.+-.|+.
T Consensus 176 GI---~s----~eDA~~a~~~Gv~~I~VSnH-------GGR-qlD~~~~t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~ 240 (301)
T pfam01070 176 GI---LS----PEDAKRAVEAGVDGIVVSNH-------GGR-QLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVL 240 (301)
T ss_pred CC---CC----HHHHHHHHHCCCCEEEECCC-------CCC-CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 28---99----99999999859999996499-------854-46888679999999999856774899638747626899
Q ss_pred HHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 8742-0352344122000124399
Q gi|254781167|r 205 KILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 205 ~~l~-~~dgvMigRga~~~P~if~ 227 (322)
+.+. |+|.|++|| ||++.
T Consensus 241 KAlALGA~~V~iGR-----p~l~a 259 (301)
T pfam01070 241 KALALGADAVLLGR-----PFLYG 259 (301)
T ss_pred HHHHCCCCEEEECH-----HHHHH
T ss_conf 99980898665568-----99999
No 56
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.03 E-value=2.4e-05 Score=59.24 Aligned_cols=158 Identities=18% Similarity=0.299 Sum_probs=105.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--
Q ss_conf 846999826998999998875310453777442564136776668899998558999999999850279069998611--
Q gi|254781167|r 48 KPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI-- 125 (322)
Q Consensus 48 ~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl-- 125 (322)
-.+-+|+.|+= ..+..+-++ -+.|++-|=+| +..+++|+++.++.+..-. -.+-+|+-.|-
T Consensus 74 ~~~pi~vGGGI-rs~~~i~~~-l~~Ga~kvvig--------------s~~~~~~~~~~~i~~~~G~-~~ivvsiD~k~~~ 136 (240)
T PRK13585 74 TDVSIQLGGGI-RSVEDAASL-LDLGVDRVILG--------------TAAIENPELVRELSDEFGS-ERVMVSLDAKDGE 136 (240)
T ss_pred CCCCEEEECCC-CCHHHHHHH-HHCCCCEEEEC--------------CCCHHCCHHHHHHHHHHCC-CEEEEEEEEECCC
T ss_conf 79778997885-879999999-97699899939--------------8113184288999987397-2179999930650
Q ss_pred ----CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf ----3456653220145543200012201210013566402577421227661046787666738875302577778998
Q gi|254781167|r 126 ----GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS 201 (322)
Q Consensus 126 ----G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~ 201 (322)
||.+. +.....++++.+++.|+..+.++-=. ..| .-.| .|.+.+.++.+.. ++|+++.||+.+.+
T Consensus 137 v~~~gw~~~-~~~~~~e~~~~~~~~g~~eii~tdI~--~dG------t~~G-~d~~~~~~i~~~~-~~pviasGGv~s~~ 205 (240)
T PRK13585 137 VVIEGWTES-TGKDPVEWAQRFEELGAGSILFTNVD--VEG------LLQG-VNPEPVRELVDSV-DIPVIASGGVTSLD 205 (240)
T ss_pred CCCCCCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEC--CHH------HHCC-CCHHHHHHHHHHC-CCCEEEECCCCCHH
T ss_conf 232476567-88635577788886387358986423--322------3257-8989999999868-99999988999999
Q ss_pred HHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 988874-20352344122000124399999987
Q gi|254781167|r 202 QALKIL-PSVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 202 ~a~~~l-~~~dgvMigRga~~~P~if~~I~~~l 233 (322)
|..... .|++||.+|++.+.+-.-+.|+.+++
T Consensus 206 di~~l~~~g~~gvivG~Al~~g~i~l~e~~~~~ 238 (240)
T PRK13585 206 DVKALKEAGAAGVVVGSALYKGKFTLEEALEAA 238 (240)
T ss_pred HHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHHH
T ss_conf 999999789978998768767997899999996
No 57
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.02 E-value=3.1e-05 Score=58.45 Aligned_cols=171 Identities=12% Similarity=0.212 Sum_probs=112.0
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-.++-.+-+|++|+= ..+..+-+++ +.|+|-|=|| ++..++|+++.++.+..-. -.+-
T Consensus 65 ~~I~~i~~~~~vpiqvGGGI-rs~e~~~~ll-~~GadkViig--------------S~a~~np~~i~~~~~~fG~-q~Iv 127 (252)
T PRK13597 65 DVVARVAERVFIPLTVGGGV-RSLEDARKLL-LSGADKVSVN--------------SAAVRRPELIRELADHFGA-QAVV 127 (252)
T ss_pred HHHHHHHHHCCCCEEEECCC-CCHHHHHHHH-HCCCCEEEEC--------------HHHHHCCHHHHHHHHHCCC-CCEE
T ss_conf 99999986269828984771-3089999998-5698779832--------------6667493789999987499-6529
Q ss_pred EEEEEE----------CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999861----------1345665322014554320001220121001356640257742122766104678766673887
Q gi|254781167|r 119 VTVKCR----------IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD 188 (322)
Q Consensus 119 vsvK~R----------lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~ 188 (322)
+++-.| -||.. .+.....+++..+.+.|+..+.+ |.+. ++=+-.| .|.+.+..+.+.. .
T Consensus 128 ~~iD~~~~~~~~~v~~~~~~~-~~~~~~~d~~~~~~~~G~geil~---tdI~-----rDGt~~G-~d~~l~~~i~~~~-~ 196 (252)
T PRK13597 128 LAIDARWRGDFPEVHVAGGRV-PTGLHAVEWAVKGVELGAGEILL---TSMD-----RDGTKEG-YDLRLTRMVAEAV-G 196 (252)
T ss_pred EEEEEEECCCCCEEEECCCEE-ECCCCHHHHHHHHHHHCCCEEEE---EEEC-----CCCCCCC-CCHHHHHHHHHCC-C
T ss_conf 999888618974167538727-56976999999999648999999---7573-----7684447-6959999998507-9
Q ss_pred CCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 53025777789989888742-03523441220001243999999871998
Q gi|254781167|r 189 LFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFSNPL 237 (322)
Q Consensus 189 ~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~~~~ 237 (322)
+|+++.||+.+.+|..+..+ |++||.+|+..+.+-.-..++++++....
T Consensus 197 ~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~L~~~~ 246 (252)
T PRK13597 197 VPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRYLAEKG 246 (252)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 98999789899999999987899699871276779999999999999878
No 58
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.02 E-value=4.2e-05 Score=57.40 Aligned_cols=168 Identities=14% Similarity=0.291 Sum_probs=108.3
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-..+-.+-+|++|+= ..+..+-+++ +.|++-|=|| ++..+||+++.++.+..-. -.+-
T Consensus 61 ~~i~~i~~~~~~pi~vGGGI-rs~~~~~~~l-~~GadkVvig--------------s~~~~n~~~~~~~~~~~Gs-q~Iv 123 (243)
T cd04731 61 DVVERVAEEVFIPLTVGGGI-RSLEDARRLL-RAGADKVSIN--------------SAAVENPELIREIAKRFGS-QCVV 123 (243)
T ss_pred HHHHHHHHHCCCCEEEEEEE-EEHHHHHHHH-HCCCCEEEEC--------------CCCCCCCCHHHHHHHHCCC-CCEE
T ss_conf 99999998679868998506-6479999999-7799789989--------------8442377143578875699-3099
Q ss_pred EEEEEE-----------CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999861-----------134566532201455432000122012100135664025774212276610467876667388
Q gi|254781167|r 119 VTVKCR-----------IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP 187 (322)
Q Consensus 119 vsvK~R-----------lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~ 187 (322)
+|+-+| -||.+ .....+.++++.+++.|+..+.++-=. ++=+..| .|.+.+..+.+..
T Consensus 124 ~siD~k~~~~~~~~v~~~~~~~-~~~~~~~~~i~~~~~~G~geil~tdI~--------~DGt~~G-~d~~l~~~i~~~~- 192 (243)
T cd04731 124 VSIDAKRRGDGGYEVYTHGGRK-PTGLDAVEWAKEVEELGAGEILLTSMD--------RDGTKKG-YDLELIRAVSSAV- 192 (243)
T ss_pred EEEEEEECCCCCEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC-
T ss_conf 9999765378962898469844-126789999999984698789998725--------7685665-7999999999868-
Q ss_pred CCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 75302577778998988874--203523441220001243999999871
Q gi|254781167|r 188 DLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 188 ~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
++|++++||+.+.+|..+.+ .++|||.+|+..+.+-.-..++++++.
T Consensus 193 ~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~~~~l~~~k~~L~ 241 (243)
T cd04731 193 NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHHHH
T ss_conf 9999998899999999999987898299882276769989999999986
No 59
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.01 E-value=0.0003 Score=51.13 Aligned_cols=175 Identities=14% Similarity=0.203 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHC-CCCCCCEEEEEECCCH-HHHHHHHHHHHCCCCCEEE
Q ss_conf 9778607899999982898299817033247760897898302-7457846999826998-9999988753104537774
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGF-STQEKPLALQIGGADI-SKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~-~~~e~p~~~Ql~g~~p-~~~~~aa~~~~~~g~~~id 78 (322)
|.++|+..+=.-+-+.|+-+.+=.-..+.+.+- ..+.+. ....+|+.+-++.... ..+.+-.+.+.+.+.+.|.
T Consensus 10 M~~vs~~~LaaAvs~aGglG~l~~~~~~~~~l~----~~i~~~~~~~~~pfgvnl~~~~~~~~~~~~~~~~~~~~v~~v~ 85 (236)
T cd04730 10 MAGVSTPELAAAVSNAGGLGFIGAGYLTPEALR----AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVS 85 (236)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHH----HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 778786999999996898558578889999999----9999999746997244332467763689999999976999999
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998611345665322014554320001220121001356
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA 158 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~ 158 (322)
+-.|=|. ++++.+++ .+++|-+++- ..+.++.+.++|+|.|.+.+.-+
T Consensus 86 ~~~g~p~--------------------~~v~~l~~-~g~~v~~~v~-----------s~~~A~~a~~~GaD~iv~qG~eA 133 (236)
T cd04730 86 FSFGPPA--------------------EVVERLKA-AGIKVIPTVT-----------SVEEARKAEAAGADALVAQGAEA 133 (236)
T ss_pred ECCCCCH--------------------HHHHHHHH-CCCEEEEECC-----------CHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8798978--------------------99999998-2998999589-----------89999999981899899977777
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 64025774212276610467876667388753025777789989888742-0352344122
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
.|..+ .........+.++.+.+ ++||+.-|+|.|.+++...+. |+|||++|.-
T Consensus 134 --GGH~g----~~~~~~~~lv~~v~~~~-~ipviaAGGI~~g~~i~aal~lGA~gV~~GTr 187 (236)
T cd04730 134 --GGHRG----TFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTR 187 (236)
T ss_pred --CCCCC----CCCCCHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHCCCEEEECCH
T ss_conf --77889----87555677999999982-98689654627789999999808979995538
No 60
>PRK05211 consensus
Probab=98.01 E-value=5.5e-05 Score=56.56 Aligned_cols=171 Identities=16% Similarity=0.280 Sum_probs=111.2
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-.++--+-+|++|+ -..+..+-+++ +.|+|-|=|| ++..+||+++.++.+..-. -.+-
T Consensus 55 ~~I~~i~~~~~~Pl~vGGG-Irs~~~i~~ll-~~GadkViig--------------s~a~~np~li~~~~~~fG~-q~Iv 117 (248)
T PRK05211 55 SWVSRVAEVIDIPFCVAGG-IKSVEDAREIL-SFGADKISIN--------------SPALADPTLITRLADRFGV-QCIV 117 (248)
T ss_pred HHHHHHHHHCCCCEEEECC-CCCHHHHHHHH-HCCCCEEEEC--------------CHHHHCCHHHHHHHHHCCC-CEEE
T ss_conf 9999999767985896278-01389999999-8799889989--------------7676196189999985799-3699
Q ss_pred EEEEEE-------------CCCCC--CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999861-------------13456--653220145543200012201210013566402577421227661046787666
Q gi|254781167|r 119 VTVKCR-------------IGVDD--QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIK 183 (322)
Q Consensus 119 vsvK~R-------------lG~~~--~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~ 183 (322)
+|+-.| .|+.. ..+...+.++++.+++.|+..|.+ |-+. ++=+-.| .|.+.+..+.
T Consensus 118 vsiD~~~~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~---t~Id-----rDG~~~G-~dl~l~~~i~ 188 (248)
T PRK05211 118 VGIDSWFDAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVL---NMMN-----QDGVRNG-YDLAQLKKVR 188 (248)
T ss_pred EEEEEECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---EEEC-----CCCCCCC-CCHHHHHHHH
T ss_conf 99971025557857999825865653047736999999999759866999---8987-----8997278-8999999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 738875302577778998988874--20352344122000124399999987199
Q gi|254781167|r 184 KENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 184 ~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
+.. .+|++++||+.+.+|..+.+ .+++||.+|+..+.+-.=+.++++++...
T Consensus 189 ~~~-~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~~i~l~e~k~~L~~~ 242 (248)
T PRK05211 189 AIC-HVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKQYLAAQ 242 (248)
T ss_pred HHC-CCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 746-999999888899999999998679841330488888999999999999987
No 61
>PRK00830 consensus
Probab=98.00 E-value=6.1e-05 Score=56.26 Aligned_cols=162 Identities=19% Similarity=0.330 Sum_probs=106.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE--
Q ss_conf 784699982699899999887531045377744256413677666889999855899999999985027906999861--
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR-- 124 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R-- 124 (322)
+-.+-+|++|+= ..+..+-+++ +.|+|-|-|| ++..+||+++.++.+..-. -.+-+++=.|
T Consensus 76 ~~~~pi~vGGGI-rs~e~~~~ll-~~GadkVvIg--------------S~a~~np~~v~~~~~~fGs-q~IvvsiD~k~~ 138 (273)
T PRK00830 76 EVFIPLTVGGGI-RSIEDIRQIL-RAGADKVSVN--------------TAAVKNPEFIREASDIFGS-QCIVVAIDCKRN 138 (273)
T ss_pred HCCCCEEEECCE-EECCCHHHHH-HCCCCEEECH--------------HHHHHCCHHHHHHHHHCCC-CEEEEEEEEECC
T ss_conf 669958960884-3773289999-7698639837--------------9898590778999987699-059999984337
Q ss_pred --------------------------CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf --------------------------134566532201455432000122012100135664025774212276610467
Q gi|254781167|r 125 --------------------------IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDI 178 (322)
Q Consensus 125 --------------------------lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~ 178 (322)
-||.+ .+.....++++.+++.|+..+.+.-=. ++=+-.| .|.+.
T Consensus 139 ~~~~~~~~~~~~~~~~g~~~w~~v~~~g~~~-~t~~~~~~~~~~~~~~G~geil~tdI~--------rDGt~~G-~d~~l 208 (273)
T PRK00830 139 YNPKDNPDKTIVELEDGTCAWYEVVIYGGRE-FTGIDAVQWAKKVEELGAGEILLTSMD--------RDGTKDG-YDIPI 208 (273)
T ss_pred CCCCCCCCCEEEECCCCCCCEEEEEEECCCC-CCCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHH
T ss_conf 6654567621454047874228999707803-378679999999986498868887875--------7796568-89699
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 876667388753025777789989888742--0352344122000124399999987199
Q gi|254781167|r 179 VYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 179 i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
+.++.+.. ++|++++||+.+.+|..+.+. ++|||.+|-.-+.+=.-..++++++...
T Consensus 209 ~~~i~~~~-~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~~~~~si~e~k~~L~~~ 267 (273)
T PRK00830 209 TKKISEEV-DIPVIASGGVGNPEHIYEGFSDGKADAALAASIFHFNEYSIREVKEYLRER 267 (273)
T ss_pred HHHHHHCC-CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHHHHHC
T ss_conf 99998637-998899889999999999998389868877005666997999999999987
No 62
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=1.9e-05 Score=60.01 Aligned_cols=149 Identities=16% Similarity=0.237 Sum_probs=101.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE--
Q ss_conf 784699982699899999887531045377744256413677666889999855899999999985027906999861--
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR-- 124 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R-- 124 (322)
+..+-+|+.|.= ..+..+.++ -+.|++-|-|| ++..+||+.+.++.+.--+ .+-|++-.|
T Consensus 74 ~~~~~iqvGGGI-Rs~e~i~~~-l~~G~~rViig--------------T~a~~~~~~l~~~~~~f~~--~Ivv~iD~~~~ 135 (234)
T PRK13587 74 LTTKDIEVGGGI-RTKSQIMDY-FAAGINYCIVG--------------TKGIQDTDWLKEMAHTFPG--RIYLSVDAYGE 135 (234)
T ss_pred HCCCCEEEECCC-CCHHHHHHH-HHCCCCEEEEC--------------CCCCCCHHHHHHHHHHCCC--CEEEEEECCCC
T ss_conf 379867984654-759999999-97689999988--------------8130286999999986667--76871202385
Q ss_pred ----CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf ----1345665322014554320001220121001356640257742122766104678766673887530257777899
Q gi|254781167|r 125 ----IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDM 200 (322)
Q Consensus 125 ----lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~ 200 (322)
-||.+. +...+.++++.+++.|+..+.+ |-+.+ +=+-.| .|++.+.++.+. +++|++++|+|.|.
T Consensus 136 ~v~~~GW~~~-s~~~~~d~~~~~~~~g~~~il~---TdI~r-----DGtl~G-~n~el~~~i~~~-~~~pvIaSGGv~sl 204 (234)
T PRK13587 136 DIKVNGWEED-TELNLFSFVRQLSDIPLGGIIY---TDIAK-----DGKMSG-PNFELTGQLVKA-TTIPVIASGGIRHQ 204 (234)
T ss_pred EEEECCCCEE-CCCCHHHHHHHHHHCCCCEEEE---ECCCC-----CCCCCC-CCHHHHHHHHHH-CCCCEEEECCCCCH
T ss_conf 4544575142-5867999999997439878998---40266-----574557-999999999976-79999998998999
Q ss_pred HHHHHHHH-CCCCEEEECCCCCHHH
Q ss_conf 89888742-0352344122000124
Q gi|254781167|r 201 SQALKILP-SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 201 ~~a~~~l~-~~dgvMigRga~~~P~ 224 (322)
+|..+..+ |++||-|||+.|.+-|
T Consensus 205 ~Di~~L~~~gv~GvIvGkAlYeg~f 229 (234)
T PRK13587 205 QDIQRLASLNVHAAIIGKAAHQASF 229 (234)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCH
T ss_conf 9999999889989999975017822
No 63
>PRK01659 consensus
Probab=97.91 E-value=6.6e-05 Score=55.98 Aligned_cols=169 Identities=13% Similarity=0.252 Sum_probs=111.5
Q ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83027457846999826998999998875310453777442564136776668899998558999999999850279069
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
+++.-..+--+-+|++|+= ..+..+.+++ +.|+|-|=|| ++..+||+++.++.+..-.. .+-+
T Consensus 65 ~I~~i~~~~~ipi~vGGGI-rs~e~~~~~l-~~GadkViig--------------s~a~~n~~~i~~~~~~~G~q-~Ivv 127 (252)
T PRK01659 65 VVEKVAAKVFIPLTVGGGI-SSVKDMKRLL-RAGADKVSIN--------------SAAVLRPELITEGADHFGSQ-CIVV 127 (252)
T ss_pred HHHHHHHHCCCCEEEECCE-ECHHHHHHHH-HCCCCEEEEC--------------HHHHHCHHHHHHHHHHCCCE-EEEE
T ss_conf 9999997569747996332-0068888987-4488559831--------------77752915321467646863-2699
Q ss_pred EEEEE------------CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99861------------134566532201455432000122012100135664025774212276610467876667388
Q gi|254781167|r 120 TVKCR------------IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP 187 (322)
Q Consensus 120 svK~R------------lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~ 187 (322)
|+-+| -||.+. +...+.++++.+++.|+..+.+.-=. ++=.-.| .|.+.+..+.+..
T Consensus 128 siD~k~~~~~~~~~i~~~g~~~~-~~~~~~~~i~~~~~~g~geil~tdI~--------rDG~~~G-~dl~l~~~i~~~~- 196 (252)
T PRK01659 128 AIDAKYDAEAGKWNVYTHGGRVD-TGLDAIAWAKEAVRLGAGEILLTSMD--------ADGTKNG-FDLRLTKAISEAV- 196 (252)
T ss_pred EEEEEEECCCCCEEEEECCCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC-
T ss_conf 99989705688689996899576-77779999999997699779999881--------4585476-8989999999868-
Q ss_pred CCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 753025777789989888742--0352344122000124399999987199
Q gi|254781167|r 188 DLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 188 ~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
.+|++++||+.+++|..+.+. +++||.+|+..+..-.-+.++++++...
T Consensus 197 ~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~~~~sl~e~k~~L~~~ 247 (252)
T PRK01659 197 SVPVIASGGAGNADHMVEVFQKTTADAALAASIFHYGETSIKEVKAKLREA 247 (252)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHC
T ss_conf 999999917999999999997489826557547777999999999999987
No 64
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.90 E-value=9.3e-05 Score=54.87 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=100.8
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHH-----------------------------
Q ss_conf 7846999826-9989999988753104537774425641367----76668-----------------------------
Q gi|254781167|r 47 EKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGS----------------------------- 92 (322)
Q Consensus 47 e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g----------------------------- 92 (322)
+.|.-.||+- .|.+...+-.+.++..||+.|=|..-.|+.- =.++|
T Consensus 137 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~aLvlTVD~Pv~G~Rerd~r~g~~P~~~~~~~~~~~~~p~~~~~~~~~~~~ 216 (383)
T cd03332 137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE 216 (383)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 99639999515888999999999997389779992268666876545532688643303677754788999973256776
Q ss_pred -------HHHHH------HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHH
Q ss_conf -------89999------85589999999998502790699986113456653220145543200012201210--0135
Q gi|254781167|r 93 -------FGACL------MLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARK 157 (322)
Q Consensus 93 -------~GaaL------l~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt 157 (322)
.+.++ ..+|.+.-+-++.+++..+.|+-+|= . ...+=+..+.++|++.|.| ||=
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plilKG---I-------~~~eDA~~A~~~G~dgIiVSNHGG- 285 (383)
T cd03332 217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKG---I-------LHPDDARRAVEAGVDGVVVSNHGG- 285 (383)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECC---C-------CCHHHHHHHHHCCCCEEEEECCCC-
T ss_conf 54567750145999998537888998999999987699853235---6-------899999999975998899807863-
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 66402577421227661046787666738-8753025777789989888742-0352344122000124399
Q gi|254781167|r 158 AILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
+ |.-..++-.+...++.+++ .+++|+.-|||.+-.|+.+.+. |+++||||| |+++.
T Consensus 286 --------R-QLD~apa~i~~LpeI~~aV~~~~~V~~DgGIRrG~DV~KAlALGA~~V~iGR-----p~l~g 343 (383)
T cd03332 286 --------R-QVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGR-----PYAYG 343 (383)
T ss_pred --------C-CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECH-----HHHHH
T ss_conf --------4-4678832789999999984799849997997867999999976999898778-----99998
No 65
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.89 E-value=5.4e-05 Score=56.63 Aligned_cols=156 Identities=20% Similarity=0.334 Sum_probs=105.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-
Q ss_conf 7846999826998999998875310453777442564136776668899998558999999999850279069998611-
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI- 125 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl- 125 (322)
+-.+-+|+.|+= ..+..+.+++ +.|++-|=+| ++.++||+++.++++..-+ .+-|++-+|=
T Consensus 71 ~~~~pi~vGGGI-rs~e~~~~~l-~~GadkVvig--------------S~a~~n~~~i~~~~~~~g~--~ivvsiD~k~~ 132 (241)
T PRK00748 71 AVDIPVQLGGGI-RDLETVEAYL-DAGVARVIIG--------------TAAVKNPELVKEACKKFPG--RIVVGLDARDG 132 (241)
T ss_pred HCCCCEEEECCC-CCHHHHHHHH-HCCCCEEEEC--------------CHHHHCHHHHHHHHHHCCC--CEEEEEEECCC
T ss_conf 679999982770-7499999999-7697758864--------------7103396899999862355--57999982166
Q ss_pred -----CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf -----345665322014554320001220121001356640257742122766104678766673887530257777899
Q gi|254781167|r 126 -----GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDM 200 (322)
Q Consensus 126 -----G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~ 200 (322)
||.+. +...+.++++.+++.|+..+.+.-=. ++=+-.| .|.+.+..+.+.. ++|+++.||+.+.
T Consensus 133 ~v~~~gw~~~-t~~~~~~~i~~~~~~G~~eii~tdI~--------~DGt~~G-~d~~l~~~i~~~~-~ipviasGGv~s~ 201 (241)
T PRK00748 133 KVATRGWQEV-SGVDLEDLAKRFEDAGVAAIIYTDIS--------RDGTLSG-PNVELTRELAAAT-PIPVIASGGVSSL 201 (241)
T ss_pred EEECCCCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEE--------CCCCCCC-CCHHHHHHHHHHC-CCCEEEECCCCCH
T ss_conf 5401575546-79748999999985587569998870--------5685476-8999999999868-9989998899999
Q ss_pred HHHHHHH----HCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 8988874----203523441220001243999999
Q gi|254781167|r 201 SQALKIL----PSVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 201 ~~a~~~l----~~~dgvMigRga~~~P~if~~I~~ 231 (322)
+|..+.. .+++||.||++.+.+-.-+.|.-+
T Consensus 202 ~Di~~L~~~~~~gv~gviiG~Aly~g~i~l~eal~ 236 (241)
T PRK00748 202 DDIRALKALGPEGVEGVIVGKALYEGKFDLAEALA 236 (241)
T ss_pred HHHHHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHH
T ss_conf 99999986031792489987898779989999999
No 66
>PRK02747 consensus
Probab=97.89 E-value=0.00017 Score=52.95 Aligned_cols=169 Identities=12% Similarity=0.231 Sum_probs=111.0
Q ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83027457846999826998999998875310453777442564136776668899998558999999999850279069
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
+++.-.++-.+-+|++|+= ..+..+-+++. .|+|-|=|| ++..+||+++.++.+..-. -.+-+
T Consensus 65 lI~~i~~~~~ipi~vGGGI-rs~e~~~~ll~-~GadkViig--------------s~a~~np~l~~~~~~~fG~-q~Iv~ 127 (257)
T PRK02747 65 VVARTAEQCFMPLTVGGGV-RTVDDIRKLLL-AGADKVSIN--------------SAAVARPEFVAEAADKFGS-QCIVV 127 (257)
T ss_pred HHHHHHHHCCCCEEEECCC-CCHHHHHHHHH-CCCCEEEEC--------------HHHHHCCHHHHHHHHHCCC-EEEEE
T ss_conf 9999998669988984882-07388789987-699689834--------------4465483477778875596-57999
Q ss_pred EEEEEC---------------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 998611---------------34566532201455432000122012100135664025774212276610467876667
Q gi|254781167|r 120 TVKCRI---------------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKK 184 (322)
Q Consensus 120 svK~Rl---------------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~ 184 (322)
++-.|. ||.. .+...+.++++.+++.|+..+.+. -+. ++=+-.| .|.+.+..+.+
T Consensus 128 siD~k~~~~~~~~~~~~i~~~~~~~-~t~~~~~~~~~~~~~~G~geil~t---dI~-----rDG~~~G-~dl~l~~~i~~ 197 (257)
T PRK02747 128 AIDAKRVSPAGENDRWEIFTHGGRK-PTGIDAVEFAQKVVSLGAGEILLT---SMD-----RDGTKAG-FDLPLTRAIAD 197 (257)
T ss_pred EEEEEECCCCCCCCCEEEEECCCCE-ECCCHHHHHHHHHHHCCCCEEEEE---EEC-----CCCCCCC-CCHHHHHHHHH
T ss_conf 9987751576778738999889846-343039999999997099889999---883-----5573267-88699999986
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 388753025777789989888742--0352344122000124399999987199
Q gi|254781167|r 185 ENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 185 ~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
.. .+|++++||+.+.+|..+.+. +++||.+|+.-+.+-+-..++++++...
T Consensus 198 ~~-~~pvIasGGv~~~~di~~~~~~~~~~av~~g~~~~~~~~~l~~ak~~L~~~ 250 (257)
T PRK02747 198 AV-RVPVIASGGVGTLDHLVEGVRDGHATAVLAASIFHFGTYTIGEAKAHMAAA 250 (257)
T ss_pred CC-CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHC
T ss_conf 07-998999779999999999998389849988326776998999999999987
No 67
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=97.88 E-value=4.7e-05 Score=57.06 Aligned_cols=146 Identities=18% Similarity=0.384 Sum_probs=97.3
Q ss_pred CCCEEEEEECC--CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 78469998269--9899999887531045377744256413677666889999855899999999985027906999861
Q gi|254781167|r 47 EKPLALQIGGA--DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 47 e~p~~~Ql~g~--~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
+-.+-+|+.|+ +.+. +-+++ +.|++-|=+ |+..+++|+++.++.+..-. -.+-+|+=+|
T Consensus 71 ~~~~pi~vgGGIrs~e~---~~~~l-~~Ga~kvvi--------------gs~~~~~~~~~~~~~~~~g~-q~iv~siD~k 131 (229)
T pfam00977 71 EVFIPVQVGGGIRSLED---AERLL-SAGADKVII--------------GTAAVKNPELIKEAAEKFGS-QCIVVAIDAK 131 (229)
T ss_pred HCCCCEEEECCEEEHHH---HHHHH-HCCCCEEEE--------------CCCHHHCHHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 66987899645611899---99999-769989995--------------86043093789999998098-6479999871
Q ss_pred C-------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1-------345665322014554320001220121001356640257742122766104678766673887530257777
Q gi|254781167|r 125 I-------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL 197 (322)
Q Consensus 125 l-------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi 197 (322)
- ||.+. +...+.++++.+++.|+..+.++-=. ++=...| .|++.+..+.+.. ++|+++.||+
T Consensus 132 ~~~~v~~~~~~~~-~~~~~~~~i~~~~~~g~~eii~tdi~--------~dGt~~G-~d~~l~~~i~~~~-~~pii~~GGv 200 (229)
T pfam00977 132 RDGKVAINGWREE-TGIDAVEWAKKLEELGAGEILLTDID--------RDGTLSG-PDLELTRELAEAV-NIPVIASGGV 200 (229)
T ss_pred CCCEEEEECCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC-CCCEEEECCC
T ss_conf 4517998064335-67443344567765167506887750--------4275666-8999999999768-9989998589
Q ss_pred CCHHHHHHHHH-CCCCEEEECCCCCH
Q ss_conf 89989888742-03523441220001
Q gi|254781167|r 198 EDMSQALKILP-SVDGVMIGRAAYKN 222 (322)
Q Consensus 198 ~~~~~a~~~l~-~~dgvMigRga~~~ 222 (322)
.+.+|..+..+ |++||.+|++.+.+
T Consensus 201 ~~~~di~~l~~~g~~gvivg~al~~g 226 (229)
T pfam00977 201 GSLEDLKELFSEGVDGVIAGSALHEG 226 (229)
T ss_pred CCHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 99999999998799899985786687
No 68
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.88 E-value=4.7e-05 Score=57.10 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=89.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 98269989999988753104537774425641367766688999985589999999998502790699986113456653
Q gi|254781167|r 53 QIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
|+.+..++...++.++++.. .=.|.+|. |+--+.-.|- ++..-..+-++.+++.+++||-||= +|+.-
T Consensus 123 ~l~~~~~~~~~~ai~~l~Ad-aL~iHlN~--~QE~~~peGD-----r~f~~~~~~I~~l~~~~~vPVIvKe-VG~Gi--- 190 (326)
T cd02811 123 QLNGYGVEEARRAVEMIEAD-ALAIHLNP--LQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKE-VGFGI--- 190 (326)
T ss_pred HHCCCCHHHHHHHHHHCCCC-EEEEECCH--HHHCCCCCCC-----CCHHHHHHHHHHHHHHCCCCEEEEE-CCCCC---
T ss_conf 30456899999999855788-57864460--6540078989-----8777899999999984799858852-47899---
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHH--HHHHHCCCCCCCCCCCC------CHH-----HHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 220145543200012201210013--56640257742122766------104-----67876667388753025777789
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHAR--KAILKGLSPKDNRKIPN------LDY-----DIVYEIKKENPDLFIGLNGGLED 199 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~R--t~~~~g~s~~~~~~~~~------~~~-----~~i~~l~~~~~~~~i~~NGdi~~ 199 (322)
..+-+..+.++|+++|-|-++ |-.-.-...|+ ....+ .+| +.+.+++...++++|++.|||++
T Consensus 191 ---s~eda~~l~~~Gv~~IdVSghGGTnf~~IE~~R~-~d~~~~~~~~l~dwGi~T~~sL~e~~~~~~~~~iiasGGir~ 266 (326)
T cd02811 191 ---SRETAKRLADAGVKAIDVAGAGGTSWARVENYRA-KDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN 266 (326)
T ss_pred ---CHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf ---9999999996799999978999975366531015-673133788988628556999999997389981998688787
Q ss_pred HHHHHHHHH-CCCCEEEECCCC
Q ss_conf 989888742-035234412200
Q gi|254781167|r 200 MSQALKILP-SVDGVMIGRAAY 220 (322)
Q Consensus 200 ~~~a~~~l~-~~dgvMigRga~ 220 (322)
.-|+.+.+. |+|.|++||..+
T Consensus 267 g~Dv~KalaLGA~~vgiar~~L 288 (326)
T cd02811 267 GLDIAKALALGADLVGMAGPFL 288 (326)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7999999995553365279999
No 69
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=97.88 E-value=9.8e-05 Score=54.72 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=116.2
Q ss_pred HHCCCCCCCEEEEEECCCH-------HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3027457846999826998-------999998875310453777442564136776668899998558999999999850
Q gi|254781167|r 41 LGFSTQEKPLALQIGGADI-------SKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCK 113 (322)
Q Consensus 41 ~~~~~~e~p~~~Ql~g~~p-------~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~ 113 (322)
.+.++.+-|+++=|+=|.- |+...+++++-.+ .|.|=+|+..| +-.|---|+.-+-+.+++.++++
T Consensus 138 akla~y~~piGiNiGKNK~t~~~~a~~DY~~~~~~~~~~-A~Y~~vN~SSP------NTPgLR~LQ~~~~~~~LL~~~k~ 210 (370)
T TIGR01036 138 AKLARYKGPIGINIGKNKKTPAEDAKEDYKACLRKVGPL-ADYLVVNVSSP------NTPGLRDLQYKESLRDLLTAVKE 210 (370)
T ss_pred HCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCCC------CCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 202789852643248886665442266899999987321-07078863588------97351324014358999999999
Q ss_pred CCC---------EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH-----------HHHHHH---HHHCCCCCCCCC
Q ss_conf 279---------069998611345665322014554320001220121-----------001356---640257742122
Q gi|254781167|r 114 ALS---------IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW-----------IHARKA---ILKGLSPKDNRK 170 (322)
Q Consensus 114 ~~~---------~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it-----------iH~Rt~---~~~g~s~~~~~~ 170 (322)
-.+ .||-|||== |. +.+++.+++..+.+.+++.|. |.+=.. -..|+|+|.=+.
T Consensus 211 ~~~~L~~~~~KY~P~~VKIAP---DL-~~~dl~~IAd~~v~~~~dG~IATNTT~sR~~Gv~g~k~~r~~~GGLSGkPL~~ 286 (370)
T TIGR01036 211 ETDGLRRVHRKYVPVLVKIAP---DL-SESDLLDIADSAVELGIDGIIATNTTVSRDLGVTGPKNSREETGGLSGKPLQK 286 (370)
T ss_pred HHHHHHHHHCCCCCEEEEECC---CC-CHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 999999861278857897268---98-82138999999987189848984451025200256321435678988751447
Q ss_pred CCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 766104678766673887-53025777789989888742-0352
Q gi|254781167|r 171 IPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 171 ~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
-.-++|+++.+.+.+ +|||+.|||.|.++|.+..+ |+.=
T Consensus 287 ---kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~EkI~AGASL 327 (370)
T TIGR01036 287 ---KSTEIIRRLYKELKGRLPIIGVGGISSAQNALEKIKAGASL 327 (370)
T ss_pred ---HHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHH
T ss_conf ---78999999999964957899627857478899999847124
No 70
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.86 E-value=0.00016 Score=53.09 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=100.9
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHH--------------------H--HHHHHHHHHH----
Q ss_conf 57846999826-9989999988753104537774425641367--------------------7--6668899998----
Q gi|254781167|r 46 QEKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSAR--------------------V--HEGSFGACLM---- 98 (322)
Q Consensus 46 ~e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~--------------------v--~~~g~GaaLl---- 98 (322)
...|.-.||+- .|.+...+-.+.++..||..+=|..-+|+.- . ...+.|..+.
T Consensus 123 ~~~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTVD~p~~g~Rerd~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 202 (351)
T cd04737 123 NGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYA 202 (351)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 79970899713588799999999999869998999631788786277886299889998722344677755555688988
Q ss_pred -HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCCCH
Q ss_conf -5589999999998502790699986113456653220145543200012201210--0135664025774212276610
Q gi|254781167|r 99 -LNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKIPNLD 175 (322)
Q Consensus 99 -~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~~~ 175 (322)
.++.+--+-++-+++..+.|+-+|==+ ..+=+..+.++|++.|.| ||=. |.-..|+-
T Consensus 203 ~~~~~~~w~di~~lr~~~~lplilKGI~----------~~eDA~~A~~~G~dgIvVSNHGGR----------QLD~~p~~ 262 (351)
T cd04737 203 AAKQKLSPADIEFIAKISGLPVIVKGIQ----------SPEDADVAINAGADGIWVSNHGGR----------QLDGGPAS 262 (351)
T ss_pred HHCCCCCHHHHHHHHHHCCCCEEECCCC----------CHHHHHHHHHCCCCEEEECCCCCC----------CCCCCHHH
T ss_conf 6325799899999998649985323667----------799999998749988997787512----------35676047
Q ss_pred HHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 467876667388-753025777789989888742-0352344122000124399
Q gi|254781167|r 176 YDIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 176 ~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
.+...++.+++. .++|+.-|||.+-.|+.+.+. |+|+||||| ||++.
T Consensus 263 i~~LpeI~~av~~~~~V~~DgGIR~G~DV~KALALGA~aV~iGR-----p~l~g 311 (351)
T cd04737 263 FDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGR-----PVLYG 311 (351)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECH-----HHHHH
T ss_conf 88999999986689649976986746899999976998897578-----99998
No 71
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.85 E-value=0.00021 Score=52.20 Aligned_cols=157 Identities=24% Similarity=0.263 Sum_probs=92.0
Q ss_pred CCCEEEEE-----ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 78469998-----2699899999887531045377744256413677666889999855899999999985027906999
Q gi|254781167|r 47 EKPLALQI-----GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTV 121 (322)
Q Consensus 47 e~p~~~Ql-----~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsv 121 (322)
+-|+..+| .+..++...++.++++.. .=.|.+|.. +--+.-.|- +|..-..+-++.+++.+++||-|
T Consensus 120 ~~~l~aNiGa~~~~~~~~~~~~~av~~i~Ad-Al~iHlN~~--QEl~qpEGD-----r~f~~~l~~I~~i~~~~~vPVIv 191 (351)
T PRK05437 120 DGLLFANIGAVQLYGYGVEEAQRAVEMIEAD-ALQIHLNPL--QELVQPEGD-----RDFRGWLDRIAEIVSALPVPVIV 191 (351)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CEEEECCCH--HHHCCCCCC-----CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8738861272101435899999999971678-157524624--540288889-----77889999999999867998898
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH--HHHHHCCCCCC-CCCCCC--CHH-----HHHHHHHHHCCCCCC
Q ss_conf 86113456653220145543200012201210013--56640257742-122766--104-----678766673887530
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHAR--KAILKGLSPKD-NRKIPN--LDY-----DIVYEIKKENPDLFI 191 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~R--t~~~~g~s~~~-~~~~~~--~~~-----~~i~~l~~~~~~~~i 191 (322)
|= .|+. -+ .+-++.+.+.|++.|-|-++ |-.-+-...|. +....+ .+| +.+.+++...++++|
T Consensus 192 Ke-VG~G--is----~e~a~~l~~~Gv~~IdVsg~GGTnf~~IE~~R~~~~~~~~~~~~wGipT~~sL~e~~~~~~~~~i 264 (351)
T PRK05437 192 KE-VGFG--IS----KETAKRLADAGVKAIDVAGAGGTSWAAVENYRAKQRRLASYFADWGIPTAQSLLEARSALPDLPI 264 (351)
T ss_pred EE-CCCC--CC----HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
T ss_conf 52-1578--89----99999999679999995799885579999887102124577773486689999999974799829
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 25777789989888742-0352344122
Q gi|254781167|r 192 GLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 192 ~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
++.|||++.-|+.+.+. |+|.|.+||-
T Consensus 265 iasGGIR~glDi~KaLaLGA~~vgia~p 292 (351)
T PRK05437 265 IASGGIRTGLDIAKALALGADAVGLAGP 292 (351)
T ss_pred EEECCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 9627878789999999955107775899
No 72
>PRK02145 consensus
Probab=97.83 E-value=0.00011 Score=54.37 Aligned_cols=170 Identities=13% Similarity=0.262 Sum_probs=112.9
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-..+-.+-+|++|+= ..+..+.+++ +.|+|-|=+| ++...+|+++.++.+..-. -.+-
T Consensus 65 ~~I~~i~~~~~iPi~vGGGI-rs~e~~~~ll-~~GadkVii~--------------s~a~~np~~v~~~~~~fG~-q~Iv 127 (257)
T PRK02145 65 PIIEAVASQVFIPLTVGGGV-RAVEDVRRLL-NAGADKVSMN--------------SSAVANPQLVRDAADKYGS-QCIV 127 (257)
T ss_pred HHHHHHHHHCCCCEEEECCC-CCHHHHHHHH-HCCCCEEEEH--------------HHHHHCCCHHHHHHHHCCC-CCEE
T ss_conf 99999996568748962773-0468899999-8199889841--------------5566593022457876698-3449
Q ss_pred EEEEEEC---------------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9998611---------------3456653220145543200012201210013566402577421227661046787666
Q gi|254781167|r 119 VTVKCRI---------------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIK 183 (322)
Q Consensus 119 vsvK~Rl---------------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~ 183 (322)
+|+-+|- ||.+ .+...+.++++.+++.|+..+.++-=. ++-+-.| .|.+.+.++.
T Consensus 128 ~siD~k~~~~~~~~~~~~v~~~~~~~-~t~~~~~~~~~~~~~~G~geil~tdI~--------rDG~~~G-~dl~l~~~i~ 197 (257)
T PRK02145 128 VAIDAKRVSADGEPPRWEVFTHGGRK-ATGLDAVEWARKMAELGAGEILLTSMD--------RDGTKSG-FDLALTRAVS 197 (257)
T ss_pred EEEEEEECCCCCCCCEEEEEECCCEE-CCCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHH
T ss_conf 99998733677777508999778714-367745576568876187868999984--------7787788-8979999998
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7388753025777789989888742--0352344122000124399999987199
Q gi|254781167|r 184 KENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 184 ~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
+.. .+|+++.||+.+.+|..+.++ .++||-+|+.-+.+-+-+.++++++...
T Consensus 198 ~~~-~ipvIasGGi~s~~di~~~~~~~~~~av~~g~~~~~~~~~i~e~k~~l~~~ 251 (257)
T PRK02145 198 DAV-PVPVIASGGVGSLQHLADGITEGHADAVLAASIFHYGEHTVGEAKRFMAER 251 (257)
T ss_pred HCC-CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHC
T ss_conf 626-998999868999999999998089848765326777998999999999987
No 73
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.83 E-value=7.3e-05 Score=55.64 Aligned_cols=147 Identities=20% Similarity=0.385 Sum_probs=96.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC---
Q ss_conf 46999826998999998875310453777442564136776668899998558999999999850279069998611---
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI--- 125 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl--- 125 (322)
.+-+|+.|+= ..+..+-+ +-+.|++-|=+ |+..+++|+++.++.+..-. -.+-+|+-.|-
T Consensus 73 ~~pi~vGGGI-rs~~~~~~-l~~~Ga~kvvi--------------~s~~~~~~~~~~~~~~~~G~-q~iv~slD~k~~~~ 135 (234)
T cd04732 73 GIPVQVGGGI-RSLEDIER-LLDLGVSRVII--------------GTAAVKNPELVKELLKEYGG-ERIVVGLDAKDGKV 135 (234)
T ss_pred CCCEEECCCC-CCHHHHHH-HHHCCCCEEEE--------------CCCHHHCHHHHHHHHHHCCC-CCEEEEEEEECCCH
T ss_conf 9568973771-75999999-98648871897--------------14011082789999998297-64699999751200
Q ss_pred ---CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf ---34566532201455432000122012100135664025774212276610467876667388753025777789989
Q gi|254781167|r 126 ---GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ 202 (322)
Q Consensus 126 ---G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~ 202 (322)
||.+ .+.....++++.+++.|+..+.+.-=. ++=...| .|++.+..+.+.. +.|+++.||+.+.+|
T Consensus 136 ~~~~~~~-~~~~~~~~~i~~~~~~g~geiilt~i~--------~dGt~~G-~d~~ll~~i~~~~-~~p~i~~GGv~s~~d 204 (234)
T cd04732 136 ATKGWLE-TSEVSLEELAKRFEELGVKAIIYTDIS--------RDGTLSG-PNFELYKELAAAT-GIPVIASGGVSSLDD 204 (234)
T ss_pred HCCCCCE-EECCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC-CCCEEEEECCCCHHH
T ss_conf 0168640-013516999999974586469987642--------5665356-8999999998657-998999818999999
Q ss_pred HHHHHH-CCCCEEEECCCCCHH
Q ss_conf 888742-035234412200012
Q gi|254781167|r 203 ALKILP-SVDGVMIGRAAYKNS 223 (322)
Q Consensus 203 a~~~l~-~~dgvMigRga~~~P 223 (322)
..+..+ |++||.+|++.+.+-
T Consensus 205 i~~l~~~g~~gvivgsAlh~g~ 226 (234)
T cd04732 205 IKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHHCCCCEEEEEHHHHCCC
T ss_conf 9999977998999988987799
No 74
>PRK04281 consensus
Probab=97.80 E-value=0.00015 Score=53.44 Aligned_cols=169 Identities=12% Similarity=0.265 Sum_probs=109.4
Q ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83027457846999826998999998875310453777442564136776668899998558999999999850279069
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
+++.-..+--+-+|++|+= ..+..+.+++ +.|+|-|=|| ++..++|+++.++.+..-. -.+-+
T Consensus 65 ~I~~i~~~~~vpi~vGGGI-rs~e~~~~ll-~~GadkViig--------------s~a~~np~~l~~~~~~fG~-q~Iv~ 127 (254)
T PRK04281 65 IIEEVAGQVFIPLTVGGGV-RTVADIRRLL-NAGADKVSIN--------------TAAVTRPDLIDEAAGFFGS-QAIVA 127 (254)
T ss_pred HHHHHHHHCCCCEEEECCE-EECHHHHHHH-HCCCCEEEEC--------------HHHHHCCHHHHHHHHHCCC-EEEEE
T ss_conf 9999985079628997775-4518899999-7699889977--------------7676492676767875598-21799
Q ss_pred EEEEEC-------------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 998611-------------3456653220145543200012201210013566402577421227661046787666738
Q gi|254781167|r 120 TVKCRI-------------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN 186 (322)
Q Consensus 120 svK~Rl-------------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~ 186 (322)
|+-+|. ||.+ .+...+.+++..+++.|+..+.++-=. ++-+-.| .|.+.+..+.+..
T Consensus 128 siD~k~~~~~~~~~~i~~~g~~~-~t~~~~~~~~~~~~~~g~geil~tdI~--------rDGt~~G-~d~~l~~~i~~~~ 197 (254)
T PRK04281 128 AVDAKAVNPENTRWEIFTHGGRN-PTGLDAVEWAVEMQKRGAGEILLTGMD--------RDGTKQG-FNLPLTRAVAEAV 197 (254)
T ss_pred EEEEEEECCCCCCEEEEECCCCC-CCCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC
T ss_conf 99888502468845999758864-775449999999875299899998885--------7887687-6869999998616
Q ss_pred CCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 8753025777789989888742--0352344122000124399999987199
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
++|+++.||+.+.+|..+.+. .+|||-+|...+.+-+=+.++++++...
T Consensus 198 -~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~~~~sl~eak~~l~~~ 248 (254)
T PRK04281 198 -DIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHFGEIAIREAKRAMREA 248 (254)
T ss_pred -CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHHHC
T ss_conf -998999789899999999998089888976437777998999999999986
No 75
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=97.79 E-value=0.00089 Score=47.66 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH------------
Q ss_conf 97786078999999828982998170332477608978983027457846999826998999998875------------
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKI------------ 68 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~------------ 68 (322)
|.++|+..+=.-+...|+-+.+=.-..+.+.+-. .-+++. .-..+|+.+.|+-..+.........
T Consensus 19 M~~vs~~~LaaAVs~AGglG~i~~~~~~~e~l~~-~i~~~~--~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
T pfam03060 19 MGGISTPELAAAVSEAGGLGVLGAGYLTPDRLEK-EIRKVK--ELTDKPFGVNLFLPQPAEGDDFALDPEEHLNAALKLA 95 (330)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHH-HHHHHH--HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7767869999999967988861277699999999-999999--8648876313337885431456666775013678888
Q ss_pred --------------HHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf --------------310453777442564136776668899998558999999999850279069998611345665322
Q gi|254781167|r 69 --------------VEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 69 --------------~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~ 134 (322)
+.+.+.+.|-.-+|=|.+ .+++.+++ .++.|.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~v~~~~~-~G~~v~~~v----------- 144 (330)
T pfam03060 96 LEYGVPDYGDDDDSLKDAKPKVVSFGFGLPPE-------------------DVIERLKE-SGTKVIPTV----------- 144 (330)
T ss_pred HHCCCCCHHHHHHHHHHCCCCEEEECCCCCHH-------------------HHHHHHHH-CCCEEEEEC-----------
T ss_conf 75169837999999997499999989989827-------------------99999998-799899981-----------
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
...+.++.++++|+|.|.+.|--+ .|..+. . ....-+..+..+.+.+ ++||++-|+|.|.+++...+. |+|||
T Consensus 145 ~s~~~A~~a~~~G~D~iV~qG~eA--GGH~G~-~--~~~~~~~L~~~v~~~~-~iPvIaAGGI~dg~~iaaalalGA~gV 218 (330)
T pfam03060 145 SSAKEARKAEAAGADAVVAQGPEA--GGHRGT-E--VGTGTFLLVPTVVDAV-DIPVIAAGGIADGRGIAAALALGAEGV 218 (330)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCC--CCCCCC-C--CCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 899999999981999899966766--777888-7--7730777789999871-697785266289999999996799899
Q ss_pred EEECCCCCHH
Q ss_conf 4412200012
Q gi|254781167|r 214 MIGRAAYKNS 223 (322)
Q Consensus 214 MigRga~~~P 223 (322)
++|..-+.-+
T Consensus 219 ~mGTrFlat~ 228 (330)
T pfam03060 219 QIGTRFLATK 228 (330)
T ss_pred EECCEEEECC
T ss_conf 9713001157
No 76
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.78 E-value=0.0003 Score=51.10 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=101.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH----HHHHH-----------------------------
Q ss_conf 784699982699899999887531045377744256413677----66688-----------------------------
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARV----HEGSF----------------------------- 93 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v----~~~g~----------------------------- 93 (322)
+.|.-.||+-.+.+....-.+.++..||+.|=|..-+|+.-- .++|+
T Consensus 115 ~g~~wfQLY~~~r~~~~~li~RA~~aG~~alvlTvD~pv~G~Rerd~rngf~~P~~~~~~~~~~~~~~P~w~~~~~~~g~ 194 (361)
T cd04736 115 DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGM 194 (361)
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 99847998872879999999999985998689950788878883543225678865567788775159388997650277
Q ss_pred ----------------HHHHH---HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-
Q ss_conf ----------------99998---5589999999998502790699986113456653220145543200012201210-
Q gi|254781167|r 94 ----------------GACLM---LNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI- 153 (322)
Q Consensus 94 ----------------GaaLl---~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti- 153 (322)
.++.+ -+|.+--+-++-+++..+.|+-+|= . ...+=+..+.++|++.|.|
T Consensus 195 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~~plilKG---I-------~~~eDA~~A~~~G~dgIiVS 264 (361)
T cd04736 195 PQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKG---I-------VTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEC---C-------CCHHHHHHHHHCCCCEEEEC
T ss_conf 3102346777777057889988436889999999999986699745521---4-------89999999987699999975
Q ss_pred -HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf -0135664025774212276610467876667388753025777789989888742-0352344122000124399
Q gi|254781167|r 154 -HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 154 -H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
||=. |....++-.+...++.++++ .+|+.-|||.+-.|+.+.+. |+|+|+||| ||++.
T Consensus 265 NHGGR----------QLD~a~~~id~Lp~I~~av~-~~V~~DgGIRrG~DV~KALALGA~aV~iGR-----p~lyg 324 (361)
T cd04736 265 NHGGR----------QLDDAIAPIEALAEIVAATY-KPVLIDSGIRRGSDIVKALALGANAVLLGR-----ATLYG 324 (361)
T ss_pred CCCCC----------CCCCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHCCCCEEEECH-----HHHHH
T ss_conf 88633----------35777414777999999719-949994898878999999977999898778-----99998
No 77
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.78 E-value=0.00031 Score=51.05 Aligned_cols=151 Identities=13% Similarity=0.273 Sum_probs=99.3
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-..+--+-+|++|+= ..+..+-+++ +.|++-|=+ |++.++||+++.++.+..-. -.+-
T Consensus 64 ~~I~~i~~~~~ipi~vGGGI-rs~e~~~~ll-~~GadkVii--------------gs~a~~~p~~~~~~~~~~G~-q~iv 126 (232)
T TIGR03572 64 ELISNLAEECFMPLTVGGGI-RSLEDAKKLL-SLGADKVSI--------------NTAALENPDLIEEAARRFGS-QCVV 126 (232)
T ss_pred HHHHHHHHHCCCCEEEEECE-EEHHHHHHHH-HCCCCEEEE--------------CHHHHHCCHHHHHHHHHCCC-CCEE
T ss_conf 99999999729858997133-0389999999-769968993--------------45452193577899998699-4589
Q ss_pred EEEEEEC------------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9998611------------3456653220145543200012201210013566402577421227661046787666738
Q gi|254781167|r 119 VTVKCRI------------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN 186 (322)
Q Consensus 119 vsvK~Rl------------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~ 186 (322)
+|+-+|- ||... +...+.++++.+++.|+..+.++-=. ++=+..| .|.+.+..+++..
T Consensus 127 vsiD~k~~~~~~~~~v~~~g~~~~-~~~~~~~~i~~~~~~g~geii~tdI~--------~DG~~~G-~d~~l~~~i~~~~ 196 (232)
T TIGR03572 127 VSIDVKKELDGSDYKVYSDNGRRA-TGRDPVEWAREAEQLGAGEILLNSID--------RDGTMKG-YDLELIKTVSDAV 196 (232)
T ss_pred EEEEEECCCCCCCEEEEECCCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC
T ss_conf 999984167787279996677635-79879999999873599899998885--------7685676-8999999999868
Q ss_pred CCCCCCCCCCCCCHHHHHHHH--HCCCCEEEEC
Q ss_conf 875302577778998988874--2035234412
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKIL--PSVDGVMIGR 217 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigR 217 (322)
++|++++||+.+.+|..+.+ .+++||.+|-
T Consensus 197 -~~piiasGGi~~~~di~~l~~~~~~~gv~~gs 228 (232)
T TIGR03572 197 -SIPVIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred -CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf -99999988989999999999858981999721
No 78
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.77 E-value=6.2e-05 Score=56.20 Aligned_cols=142 Identities=13% Similarity=0.265 Sum_probs=97.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE----
Q ss_conf 4699982699899999887531045377744256413677666889999855899999999985027906999861----
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR---- 124 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R---- 124 (322)
-+-+|++|+= ..+..+-+++ +.|+|-|=|| ++..+||+++.++.+..-. -.+-+++-+|
T Consensus 74 ~ipi~vGGGI-rs~e~~~~ll-~~GadkViig--------------s~a~~~p~~i~~~~~~fG~-q~IvvsiD~k~~~~ 136 (253)
T PRK01033 74 FMPLCYGGGI-KTVEQAKRIF-SLGVEKVSIS--------------TAALEDPKLITEAAEIYGS-QSVVVSIDVKKRLF 136 (253)
T ss_pred CCCEEEECCC-CCHHHHHHHH-HCCCCEEEEC--------------CHHHHCCHHHHHHHHHCCC-CCEEEEEEEECCCC
T ss_conf 9988986881-2168889998-6798669999--------------8786374165789987799-76999999824877
Q ss_pred -------CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf -------1345665322014554320001220121001356640257742122766104678766673887530257777
Q gi|254781167|r 125 -------IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL 197 (322)
Q Consensus 125 -------lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi 197 (322)
-||.. .+...+.++++.+++.|+..+.+.-=. ++=+..| .|.+.+.++.+.. ++|++++||+
T Consensus 137 ~~~~v~~~g~~~-~t~~~~~~~~~~~~~~g~geil~TdI~--------rDGt~~G-~d~~l~~~i~~~~-~ipiIasGGi 205 (253)
T PRK01033 137 GRYDVYTHNGTK-KTGLDPVEFAKQAEELGAGEIVLNSID--------RDGVMKG-YDLELIKKISSAV-KIPVTALGGA 205 (253)
T ss_pred CCEEEEEECCCC-CCCCCHHHHHHHHHHCCCCEEEEEEEC--------CCCCCCC-CCHHHHHHHHHHC-CCCEEEECCC
T ss_conf 834789867953-678558999999874697799998784--------8897668-7999999999878-9999997898
Q ss_pred CCHHHHHHHH--HCCCCEEEECC
Q ss_conf 8998988874--20352344122
Q gi|254781167|r 198 EDMSQALKIL--PSVDGVMIGRA 218 (322)
Q Consensus 198 ~~~~~a~~~l--~~~dgvMigRg 218 (322)
.+.+|..+.+ .++|||.+|.-
T Consensus 206 ~s~~di~~l~~~~~v~gv~~gs~ 228 (253)
T PRK01033 206 GSLDDIADLIQEAGASAAAAGSL 228 (253)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99999999998679739978316
No 79
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.77 E-value=0.00088 Score=47.68 Aligned_cols=176 Identities=13% Similarity=0.137 Sum_probs=110.2
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 97786078999999828982998170332477608978983027457846999826998999998875310453777442
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLN 80 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN 80 (322)
|.++|+..+=.-+.+.|+-+++=+-+.+.+.+- ..-++.. .-.++|+.+-++-..|. ..+..+.+.+.+...|-+-
T Consensus 19 M~~vs~~~La~AVs~aGglG~l~~~~~~~e~l~-~~i~~~~--~~td~P~gvnl~~~~~~-~~~~~~~~~e~~v~vv~~~ 94 (307)
T TIGR03151 19 MAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVR-KEIRKVK--ELTDKPFGVNIMLLSPF-VDELVDLVIEEKVPVVTTG 94 (307)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHH-HHHHHHH--HHCCCCCEEEEEECCCC-HHHHHHHHHHHCCCCEEEC
T ss_conf 777787899999980898416678889999999-9999999--85279860433323888-9999999986089824727
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 56413677666889999855899999999985027906999861134566532201455432000122012100135664
Q gi|254781167|r 81 VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAIL 160 (322)
Q Consensus 81 ~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~ 160 (322)
.|.|. ++++.++++ +++|.+.+ .....++.++++|+|.|.+.|--+
T Consensus 95 ~G~p~--------------------~~~~~~~~~-g~~v~~~v-----------~s~~~A~~a~~~G~D~iV~qG~EA-- 140 (307)
T TIGR03151 95 AGNPG--------------------KYIPRLKEN-GVKVIPVV-----------ASVALAKRMEKAGADAVIAEGMES-- 140 (307)
T ss_pred CCCCH--------------------HHHHHHHHC-CCEEEEEE-----------CCHHHHHHHHHCCCCEEEEECCCC--
T ss_conf 99968--------------------999999985-99799981-----------899999999964999999745544--
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCC
Q ss_conf 025774212276610467876667388753025777789989888742-0352344122000
Q gi|254781167|r 161 KGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYK 221 (322)
Q Consensus 161 ~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~ 221 (322)
.|..+ .. .-+..+.++.+.+ ++||++-|+|.|-.++...+. |+|||.+|.--+.
T Consensus 141 GGH~G----~~--~~~~Lvp~v~d~~-~iPViAAGGI~dgr~iaaalalGA~gV~mGTrFla 195 (307)
T TIGR03151 141 GGHIG----EL--TTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred CCCCC----CC--CHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHHC
T ss_conf 68778----64--3787799998504-68657641133658899999718847874419771
No 80
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.77 E-value=5.6e-05 Score=56.53 Aligned_cols=153 Identities=27% Similarity=0.387 Sum_probs=86.9
Q ss_pred HHHHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------------
Q ss_conf 98875310453777-44256413677666889999855899999999985027906999861134566------------
Q gi|254781167|r 64 EAAKIVEDFGYNEI-NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQ------------ 130 (322)
Q Consensus 64 ~aa~~~~~~g~~~i-dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~------------ 130 (322)
+-|++.++.|.-.+ -|- -+|-=.+..+|-+-|.||+.+.+|..+ +++||..|.|+|---+
T Consensus 31 EQA~IAE~aGAvAVMaLe---rvPaDiR~aGGVaRMaDp~~i~eim~a----VsIPVMAKvRIGH~~EA~iLealGVD~I 103 (296)
T COG0214 31 EQARIAEEAGAVAVMALE---RVPADIRAAGGVARMADPKMIEEIMDA----VSIPVMAKVRIGHFVEAQILEALGVDMI 103 (296)
T ss_pred HHHHHHHHCCCEEEEEHH---HCCHHHHHCCCCCCCCCHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHCCCCC
T ss_conf 999998862741672142---176878853692203788999999975----3420024530012579999999487712
Q ss_pred -C------------------------CCCCHHHHHHHHCCCCCCHHH--------------HHHHHH-----HHHCCCCC
Q ss_conf -5------------------------322014554320001220121--------------001356-----64025774
Q gi|254781167|r 131 -I------------------------PAVALRNLVKSIKKSGVNGIW--------------IHARKA-----ILKGLSPK 166 (322)
Q Consensus 131 -~------------------------~~~~~~~~~~~~~~~g~~~it--------------iH~Rt~-----~~~g~s~~ 166 (322)
+ ...++-|-++++. .|+++|- =|-|.- .++.++.
T Consensus 104 DESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~-EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~e- 181 (296)
T COG0214 104 DESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRIS-EGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTE- 181 (296)
T ss_pred CCCCCCCCCCHHHHCCHHHCCCCEECCCCCHHHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH-
T ss_conf 400036877633302201044563317673899999874-117777147888877499999999999999999873688-
Q ss_pred CCCCC----CCCHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHH-CCCCEEEECCCCC--HHHHH
Q ss_conf 21227----66104678766673887530--25777789989888742-0352344122000--12439
Q gi|254781167|r 167 DNRKI----PNLDYDIVYEIKKENPDLFI--GLNGGLEDMSQALKILP-SVDGVMIGRAAYK--NSAML 226 (322)
Q Consensus 167 ~~~~~----~~~~~~~i~~l~~~~~~~~i--~~NGdi~~~~~a~~~l~-~~dgvMigRga~~--~P~if 226 (322)
+..+. -.+-|+.+..+++.. .+|+ ++-|+|-++.||.-|+. |+|||.+|.|+++ ||--+
T Consensus 182 del~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~ 249 (296)
T COG0214 182 DELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKR 249 (296)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
T ss_conf 899999987578299999999839-88747422567688167999998189847865643378998999
No 81
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=97.67 E-value=0.00044 Score=49.89 Aligned_cols=129 Identities=17% Similarity=0.320 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--------CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 668899998558999999999850279069998611--------345665322014554320001220121001356640
Q gi|254781167|r 90 EGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI--------GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILK 161 (322)
Q Consensus 90 ~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl--------G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~ 161 (322)
+-+-|.|=|.+|+=++++++.--+.+-+-+.|++-= ||..+ -=.+.+.++.+.+.||+.+.| |-+-|
T Consensus 102 RVNiGTAALE~P~W~A~vI~~yGd~vAVgl~V~~~DGeh~l~g~GW~~d--GGDLwevl~~LDS~GCsRfVV---TDv~K 176 (246)
T TIGR01919 102 RVNIGTAALENPEWIASVIKKYGDKVAVGLDVRLIDGEHRLRGRGWESD--GGDLWEVLERLDSEGCSRFVV---TDVAK 176 (246)
T ss_pred EEECCHHCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCEEEECCCCCCC--CCCHHHHHHHHCCCCCCCEEE---EECCC
T ss_conf 4400101046823788998760776875457898738566604675578--862899998743488540378---50123
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--H--HCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 257742122766104678766673887530257777899898887--4--20352344122000124399999
Q gi|254781167|r 162 GLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI--L--PSVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 162 g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~--l--~~~dgvMigRga~~~P~if~~I~ 230 (322)
+=.-.|| +.+...++... .+-||+++|+|...+|..+. + .|+|++.||.+.|.+-|-+.|.-
T Consensus 177 -----DG~lsGP-N~~LL~eVA~~-TDA~v~ASGGiS~LdDl~~i~~l~~~Gvds~I~GKaLY~~~FTL~~AL 242 (246)
T TIGR01919 177 -----DGTLSGP-NVELLAEVAER-TDAPVVASGGISKLDDLRAIAKLAEEGVDSAIVGKALYARKFTLEEAL 242 (246)
T ss_pred -----CCCCCCC-CHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHCCHHHHH
T ss_conf -----7866785-28999998862-288478717756188999999997558865762025553203668999
No 82
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.65 E-value=0.00077 Score=48.13 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHCCCCCEEEECCCCCHHHH----HHHHH----------------------------
Q ss_conf 78469998269-9899999887531045377744256413677----66688----------------------------
Q gi|254781167|r 47 EKPLALQIGGA-DISKLVEAAKIVEDFGYNEINLNVGCPSARV----HEGSF---------------------------- 93 (322)
Q Consensus 47 e~p~~~Ql~g~-~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v----~~~g~---------------------------- 93 (322)
+.|.-.||+-. |.+....-.+.++..||+.|=|..-+|+.-- .++|+
T Consensus 121 ~~~~WfQLY~~~Dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~R~rd~rn~~~~p~~~~~~~~~~~~~P~w~~~~~~~g~ 200 (381)
T PRK11197 121 KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGR 200 (381)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 89738998413888999999999998499879980788877866554306777898128789988648178776334478
Q ss_pred -------------HHHH---------HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf -------------9999---------855899999999985027906999861134566532201455432000122012
Q gi|254781167|r 94 -------------GACL---------MLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 94 -------------GaaL---------l~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~i 151 (322)
++.+ .-+|.+--+-++-+++..+.|+-||==+ ..+=+..+.++|++.|
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plvlKGIl----------~~eDA~~A~~~G~dgI 270 (381)
T PRK11197 201 PHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIREFWDGPMVIKGIL----------DPEDARDAVRFGADGI 270 (381)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCC----------CHHHHHHHHHCCCCEE
T ss_conf 865443100137765588899998750588899999999998729976785258----------8999999996699889
Q ss_pred HH--HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 10--013566402577421227661046787666738-8753025777789989888742-0352344122000124399
Q gi|254781167|r 152 WI--HARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 152 ti--H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
.| ||= + |.-..++-.+...++.+++ .+++|+.-|||.+-.|+.+.+. |+++|+||| |+++.
T Consensus 271 iVSNHGG---------R-QLD~apa~i~~LpeI~~aV~~~~~V~~DgGiRrG~DV~KALALGA~aV~vGR-----p~lyg 335 (381)
T PRK11197 271 VVSNHGG---------R-QLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGR-----AFVYA 335 (381)
T ss_pred EEECCCC---------C-CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECH-----HHHHH
T ss_conf 9957763---------2-1567844899999999986789739996897866899999976998897675-----99998
No 83
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.62 E-value=0.00011 Score=54.38 Aligned_cols=149 Identities=27% Similarity=0.375 Sum_probs=88.1
Q ss_pred HHHHHHHCCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--------------
Q ss_conf 9887531045377-7442564136776668899998558999999999850279069998611345--------------
Q gi|254781167|r 64 EAAKIVEDFGYNE-INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVD-------------- 128 (322)
Q Consensus 64 ~aa~~~~~~g~~~-idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~-------------- 128 (322)
+-|++.++.|.-. .-|- .+|-=.++.+|-+=|.||+.+.+|.+ ++++||..|+|+|--
T Consensus 19 eQA~IAE~AGAvaVMaLe---rvPadiR~~GGVaRMsdp~~I~eI~~----aVsIPVMAK~RIGHfvEAqiLealgVD~I 91 (283)
T cd04727 19 EQARIAEEAGAVAVMALE---RVPADIRAAGGVARMADPKMIKEIMD----AVSIPVMAKVRIGHFVEAQILEALGVDMI 91 (283)
T ss_pred HHHHHHHHCCCEEEEEEC---CCCHHHHHCCCCCCCCCHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 999999871753786423---48787874479001589899999998----52220023420221799999999588823
Q ss_pred -CCC----------------------CCCCHHHHHHHHCCCCCCHH--------------HHHHHHHH-----HHCCCCC
Q ss_conf -665----------------------32201455432000122012--------------10013566-----4025774
Q gi|254781167|r 129 -DQI----------------------PAVALRNLVKSIKKSGVNGI--------------WIHARKAI-----LKGLSPK 166 (322)
Q Consensus 129 -~~~----------------------~~~~~~~~~~~~~~~g~~~i--------------tiH~Rt~~-----~~g~s~~ 166 (322)
+.+ ...++-|-++++. .|+.+| .-|.|+-. +++++.
T Consensus 92 DESEVLTpAD~~~HI~K~~F~vPFVCGarnLgEAlRRI~-EGAaMIRTKGEaGTGnVveAVrH~R~i~~eI~~l~~~~~- 169 (283)
T cd04727 92 DESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRIS-EGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSE- 169 (283)
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCEEECCCCCHHHHHHHH-CCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH-
T ss_conf 522357777532044310377774406898189998886-212016777968856699999999999999999977999-
Q ss_pred CCCCC----CCCHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHH-CCCCEEEECCCCCH
Q ss_conf 21227----66104678766673887530--25777789989888742-03523441220001
Q gi|254781167|r 167 DNRKI----PNLDYDIVYEIKKENPDLFI--GLNGGLEDMSQALKILP-SVDGVMIGRAAYKN 222 (322)
Q Consensus 167 ~~~~~----~~~~~~~i~~l~~~~~~~~i--~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~ 222 (322)
+..+. -.+-|+.+..+++.. .+|+ +.-|+|-|+.||.-|+. |||||.+|.|+++.
T Consensus 170 ~el~~~Ak~~~ap~elv~~v~~~g-rLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS 231 (283)
T cd04727 170 EELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 231 (283)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999999998677589999999978-97636642678588377999997289878877654578
No 84
>PRK05211 consensus
Probab=97.62 E-value=0.00012 Score=54.05 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
.-.-.+.++...+.|++.|.+=-=.+. + +-.+.+++.|.++.+.. .+|+..-|+|+|.+++.+++. |+|
T Consensus 20 ~gDP~~~ak~~~~~gadelhivDld~a------~---~g~~~n~~~I~~i~~~~-~~Pl~vGGGIrs~~~i~~ll~~Gad 89 (248)
T PRK05211 20 IGDIVPLAKRYAEEGADELVFYDITAS------S---DGRVVDKSWVSRVAEVI-DIPFCVAGGIKSVEDAREILSFGAD 89 (248)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCC------C---CCCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 789999999999869998999978677------6---78721499999999767-9858962780138999999987998
Q ss_pred CEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 2344122000124399999987199
Q gi|254781167|r 212 GVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 212 gvMigRga~~~P~if~~I~~~l~~~ 236 (322)
=|.||..|+.||-++.++...|..+
T Consensus 90 kViigs~a~~np~li~~~~~~fG~q 114 (248)
T PRK05211 90 KISINSPALADPTLITRLADRFGVQ 114 (248)
T ss_pred EEEECCHHHHCCHHHHHHHHHCCCC
T ss_conf 8998976761961899999857993
No 85
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=97.62 E-value=9.7e-05 Score=54.76 Aligned_cols=149 Identities=29% Similarity=0.403 Sum_probs=87.7
Q ss_pred HHHHHHHCCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---------------
Q ss_conf 9887531045377-744256413677666889999855899999999985027906999861134---------------
Q gi|254781167|r 64 EAAKIVEDFGYNE-INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV--------------- 127 (322)
Q Consensus 64 ~aa~~~~~~g~~~-idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~--------------- 127 (322)
+-|++.++.|.-. .-|- .+|-=.++.+|-+=|.||+++.+|.++ +++||..|+|+|-
T Consensus 28 eQA~IAE~AGAvaVMaLe---rvPadiR~~GGVaRMsdp~~I~eI~~a----VsIPVMAK~RIGHfvEAqiLealgVD~I 100 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALE---RVPADIRAAGGVARMADPKIIEEIMDA----VSIPVMAKARIGHFVEAQILEALGVDYI 100 (293)
T ss_pred HHHHHHHHCCCEEEEEEC---CCCHHHHHCCCEEECCCHHHHHHHHHH----CCCHHHHHHCCCHHHHHHHHHHHCCCEE
T ss_conf 999999873764898753---585878725891015998999999986----4632322110012999999999588824
Q ss_pred CCCC----------------------CCCCHHHHHHHHCCCCCCHHH--------------HHHHHHH-----HHCCCCC
Q ss_conf 5665----------------------322014554320001220121--------------0013566-----4025774
Q gi|254781167|r 128 DDQI----------------------PAVALRNLVKSIKKSGVNGIW--------------IHARKAI-----LKGLSPK 166 (322)
Q Consensus 128 ~~~~----------------------~~~~~~~~~~~~~~~g~~~it--------------iH~Rt~~-----~~g~s~~ 166 (322)
|+.+ ...++-|-++++. .|+.+|- -|.|+-. +++++.
T Consensus 101 DESEVLTpAD~~~HI~K~~F~vPFVCGarnLgEAlRRI~-EGAaMIRTKGEaGTGnVveAVrH~R~i~~eI~~l~~~~~- 178 (293)
T PRK04180 101 DESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIG-EGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSE- 178 (293)
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCEEECCCCHHHHHHHHH-HCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH-
T ss_conf 531126656554215400277762205776589988775-022340035767877499999999999999999976999-
Q ss_pred CCCCC----CCCHHHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCH
Q ss_conf 21227----6610467876667388753--025777789989888742-03523441220001
Q gi|254781167|r 167 DNRKI----PNLDYDIVYEIKKENPDLF--IGLNGGLEDMSQALKILP-SVDGVMIGRAAYKN 222 (322)
Q Consensus 167 ~~~~~----~~~~~~~i~~l~~~~~~~~--i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~ 222 (322)
++.+. -.+-|+.+..+++.. .+| -+.-|+|-++.||.-|+. |||||.+|.|+++.
T Consensus 179 ~el~~~Ak~~~ap~elv~~v~~~g-rLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS 240 (293)
T PRK04180 179 DELMTAAKELGAPYELVKEVARLG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKS 240 (293)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999999998477689999999848-87625532577578056999987178746754543467
No 86
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.0003 Score=51.10 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=90.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCEEE----EE
Q ss_conf 469998269989999988753104537774425641367766688999985589999999998502---79069----99
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA---LSIPV----TV 121 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~---~~~pv----sv 121 (322)
.+-+|+.|+= ..... ++.+-+.|++-|-+ ||+.+++|+++.++++..-.. +.+-+ .+
T Consensus 72 ~~piqvGGGI-rs~e~-~~~~l~~Ga~kVii--------------gS~a~~np~~~~~~~~~~G~~~iv~siD~~~~~~v 135 (231)
T PRK13586 72 FSWIQVGGGI-RDVEK-AERLLSYDCSAIVM--------------STLPFTNPDTFRRIVAGIGENRVLVSVDYDDRKYV 135 (231)
T ss_pred CCCEEEECCC-CCHHH-HHHHHHCCCCEEEE--------------CHHHHHCHHHHHHHHHHHCCCCEEEEEEECCCCEE
T ss_conf 9857985671-76999-99999779988997--------------68887695999999998499668999997589689
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 86113456653220145543200012201210013566402577421227661046787666738875302577778998
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS 201 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~ 201 (322)
.++ ||.+. ...+.++++.+++.|+..+.+.-=. ++=+-.| .|.+....++ ....++++ .|||.+.+
T Consensus 136 ~~~-Gw~~~--~~~~~~~i~~~~~~g~~~ii~TdI~--------~DGt~~G-~d~~l~~~i~-~~~~~~i~-aGGi~s~~ 201 (231)
T PRK13586 136 LIK-GWKEK--SMKVEDAISHVNSLESLGVIFTYVC--------NEGTKNG-IDNNVKRYVK-LVKGEKEY-AGGIGSIQ 201 (231)
T ss_pred EEE-CCCCC--CCCHHHHHHHHHHCCCCEEEEEEEC--------CHHCCCC-CCHHHHHHHH-HCCCCCEE-ECCCCCHH
T ss_conf 984-87268--8669999999997599889997645--------1120368-9989999998-71899599-86889999
Q ss_pred HHHHHHH-CCCCEEEECCCCCH
Q ss_conf 9888742-03523441220001
Q gi|254781167|r 202 QALKILP-SVDGVMIGRAAYKN 222 (322)
Q Consensus 202 ~a~~~l~-~~dgvMigRga~~~ 222 (322)
|..+..+ |++|+.+|++.|.+
T Consensus 202 Di~~L~~~G~~gaivG~Aly~G 223 (231)
T PRK13586 202 DLQKLKKMGFDYAIVGMSFYAG 223 (231)
T ss_pred HHHHHHHCCCCEEEEEHHHHCC
T ss_conf 9999986799889999788688
No 87
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.49 E-value=0.0037 Score=43.11 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=85.1
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 9998875310453777442564136776668899998558--99999999985027906999861134566532201455
Q gi|254781167|r 62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP--DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNL 139 (322)
Q Consensus 62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p--~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~ 139 (322)
+.++-. +.+.|+|.|-+-+-= -..| +.+.++++.+++..+..+-.-|- + ++=
T Consensus 78 ~~ev~~-l~~aGadiIA~DaT~--------------R~RP~g~~~~~~i~~i~~~~~~l~MAD~s-------t----~ee 131 (222)
T PRK01130 78 LKEVDA-LAAAGADIIALDATL--------------RPRPDGETLAELVKRIKEKPGQLLMADCS-------T----LEE 131 (222)
T ss_pred HHHHHH-HHHCCCCEEEEECCC--------------CCCCCCCCHHHHHHHHHHHHCCEEEEECC-------C----HHH
T ss_conf 999999-998699999984678--------------98989968999999999982987898548-------8----999
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 432000122012--100135664025774-212276610467876667388753025777789989888742-0352344
Q gi|254781167|r 140 VKSIKKSGVNGI--WIHARKAILKGLSPK-DNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 140 ~~~~~~~g~~~i--tiH~Rt~~~~g~s~~-~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
+..+.++|+|.| |+.|=| +. ..+.....||+.+.++.+. .+|+++-|.|++++++.+.++ |++.|-|
T Consensus 132 a~~A~~~G~D~V~TTLsGYT-------~~t~~~~~~~pD~~lv~~l~~~--~~pvIaEGri~tPe~a~~al~~GA~aVvV 202 (222)
T PRK01130 132 GLAAAKLGFDFIGTTLSGYT-------EYTEGETPEEPDFALLKELLKA--GCPVIAEGRINTPEQAKKALELGAHAVVV 202 (222)
T ss_pred HHHHHHCCCCEEECCCCCCC-------CCCCCCCCCCCCHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 99999849999972334567-------6767787899869999999958--99899747989999999999849989998
Q ss_pred ECCCCCHHHHH
Q ss_conf 12200012439
Q gi|254781167|r 216 GRAAYKNSAML 226 (322)
Q Consensus 216 gRga~~~P~if 226 (322)
|. |+-+|...
T Consensus 203 Gs-AITrP~~I 212 (222)
T PRK01130 203 GS-AITRPEEI 212 (222)
T ss_pred CC-CCCCHHHH
T ss_conf 97-54798999
No 88
>KOG1606 consensus
Probab=97.46 E-value=0.00025 Score=51.72 Aligned_cols=156 Identities=26% Similarity=0.380 Sum_probs=83.1
Q ss_pred HHHHHHCCCCC-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC------------C---
Q ss_conf 88753104537-7744256413677666889999855899999999985027906999861134------------5---
Q gi|254781167|r 65 AAKIVEDFGYN-EINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV------------D--- 128 (322)
Q Consensus 65 aa~~~~~~g~~-~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~------------~--- 128 (322)
-|++.++.|.- .+-|. - +|.=.+..+|-+-|.||..+. .+..++++||-.|.|+|- |
T Consensus 33 QA~iAE~aGACaVmale-r--vPadiR~~GgV~RMsDP~mIK----ei~~aVsiPVMAk~RiGHFVEAQIlE~l~vDYiD 105 (296)
T KOG1606 33 QARIAEEAGACAVMALE-R--VPADIRAQGGVARMSDPRMIK----EIKNAVSIPVMAKVRIGHFVEAQILEALGVDYID 105 (296)
T ss_pred HHHHHHHCCCCEEEEEC-C--CCHHHHHCCCEEECCCHHHHH----HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88888863760575311-2--877677347820069879999----9997446122211343025599999985567215
Q ss_pred -----------CCC-----------CCCCHHHHHHHHCCCCCCHHHH--------------HHH-----HHHHHCCCCCC
Q ss_conf -----------665-----------3220145543200012201210--------------013-----56640257742
Q gi|254781167|r 129 -----------DQI-----------PAVALRNLVKSIKKSGVNGIWI--------------HAR-----KAILKGLSPKD 167 (322)
Q Consensus 129 -----------~~~-----------~~~~~~~~~~~~~~~g~~~iti--------------H~R-----t~~~~g~s~~~ 167 (322)
+.. ...++-|-++++. .|+.+|-. |-| .+.++-+++-+
T Consensus 106 ESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~-EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~de 184 (296)
T KOG1606 106 ESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIR-EGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDE 184 (296)
T ss_pred HHHHCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHH-HCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 43404623310112230676753542563899999875-03244020464677749999999999889999987288789
Q ss_pred CCCC----CCCHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 1227----66104678766673887530--25777789989888742-0352344122000124399999
Q gi|254781167|r 168 NRKI----PNLDYDIVYEIKKENPDLFI--GLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 168 ~~~~----~~~~~~~i~~l~~~~~~~~i--~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~ 230 (322)
-++ -.+-|+.+...++.. .+|+ ++.|++.++.||.-|+. |||||.+|.|++..|--++..+
T Consensus 185 -v~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~ 252 (296)
T KOG1606 185 -VFTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRAR 252 (296)
T ss_pred -HHHHHHHHCCCHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf -9999998647089999999708-7745874256758816799999808984886554236898899999
No 89
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.41 E-value=0.00035 Score=50.68 Aligned_cols=91 Identities=14% Similarity=0.264 Sum_probs=72.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.+.++..++.|++.|.+=-=. | . .+-.+.+++.|.++.+.. .+|+..-|+|+|.+++.+.++ |+|=|
T Consensus 32 dP~~~a~~~~~~Gad~lhlvDld----~---a--~~~~~~n~~~I~~i~~~~-~vpiqvGGGIrs~e~~~~ll~~GadkV 101 (252)
T PRK13597 32 DPVEAARAYDEAGADELVFLDIS----A---T--HEERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKV 101 (252)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC----C---C--CCCCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 99999999998699999999564----6---6--668663799999998626-982898477130899999985698779
Q ss_pred EEECCCCCHHHHHHHHHHHHCC
Q ss_conf 4412200012439999998719
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~ 235 (322)
.||..++.||-++.++...|..
T Consensus 102 iigS~a~~np~~i~~~~~~fG~ 123 (252)
T PRK13597 102 SVNSAAVRRPELIRELADHFGA 123 (252)
T ss_pred EECHHHHHCCHHHHHHHHHCCC
T ss_conf 8326667493789999987499
No 90
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00033 Score=50.86 Aligned_cols=176 Identities=11% Similarity=0.238 Sum_probs=98.3
Q ss_pred HHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 82898299817033247760897898302745784699982699899999887531045377744256413677666889
Q gi|254781167|r 15 LLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFG 94 (322)
Q Consensus 15 ~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G 94 (322)
+.|+|.++|-.-..+ .--+.....+.+...++- +++=-.|+-..++..+.+++. .|+|-|-+|
T Consensus 41 e~GADElvFlDItAs-~~gr~~~~~vv~~~A~~v-fiPltVGGGI~s~eD~~~ll~-aGADKVSIN-------------- 103 (256)
T COG0107 41 EEGADELVFLDITAS-SEGRETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLR-AGADKVSIN-------------- 103 (256)
T ss_pred HCCCCEEEEEECCCC-CCCCCCHHHHHHHHHHHC-EEEEEECCCCCCHHHHHHHHH-CCCCEEEEC--------------
T ss_conf 759976999862256-566620799999997303-032475477588899999997-699746528--------------
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCEEEEEEEEC-C----C------CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 9998558999999999850-279069998611-3----4------56653220145543200012201210013566402
Q gi|254781167|r 95 ACLMLNPDIVGDCIAAMCK-ALSIPVTVKCRI-G----V------DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKG 162 (322)
Q Consensus 95 aaLl~~p~~~~~iv~~~~~-~~~~pvsvK~Rl-G----~------~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g 162 (322)
++-+++|+++.++-...-. .+=+-|-+|-+. | | .........+++++.+++.|+-.|-+-.=. +.|
T Consensus 104 saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~eWa~~~e~~GAGEIlLtsmD--~DG 181 (256)
T COG0107 104 SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMD--RDG 181 (256)
T ss_pred HHHHCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEC--CCC
T ss_conf 467509599999999838812999987554268998767999668975688579999999997388548786355--656
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEEC
Q ss_conf 5774212276610467876667388753025777789989888742--035234412
Q gi|254781167|r 163 LSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGR 217 (322)
Q Consensus 163 ~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigR 217 (322)
.++. -|.+.++.++..+ ++|+|++|+.-+.++..+.++ .+|+++-+-
T Consensus 182 ---tk~G----yDl~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~adAaLAAs 230 (256)
T COG0107 182 ---TKAG----YDLELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGKADAALAAS 230 (256)
T ss_pred ---CCCC----CCHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf ---5367----5799999999648-87889118989688999999815700887644
No 91
>PRK13129 consensus
Probab=97.36 E-value=0.005 Score=42.10 Aligned_cols=171 Identities=16% Similarity=0.248 Sum_probs=103.2
Q ss_pred CCCCC-CEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHCC
Q ss_conf 74578-46999826998--999998875310453777442564136----7766688999985--589999999998502
Q gi|254781167|r 44 STQEK-PLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCKA 114 (322)
Q Consensus 44 ~~~e~-p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~~ 114 (322)
..+.+ .++.=+..++| +...+.++.+.+.|+|.|.|-+=-.-| .|.....--||-. +.+.+.++++.+++.
T Consensus 14 k~~~~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~ 93 (267)
T PRK13129 14 KKEGRCALMPFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGK 93 (267)
T ss_pred HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 97699558988707189989999999999977999999799888877658999999999997698789999999985434
Q ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHHH----
Q ss_conf 790699986113456653220145543200012201210-------------------------------013566----
Q gi|254781167|r 115 LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKAI---- 159 (322)
Q Consensus 115 ~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~~---- 159 (322)
.++|+-+= |+-+.--..-..+|++.+.++|++.+.| +-|-..
T Consensus 94 ~~~PivlM---~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~ 170 (267)
T PRK13129 94 LTIPIILF---TYYNPLLNRGMERFCEQAAAAGVAGLVVPDLPLEEAEKLSPIAAERGIDLILLVAPTTPAERMKRIAQQ 170 (267)
T ss_pred CCCCEEEE---EEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHC
T ss_conf 78888998---610789885599999999866987576789998999999999985398168994899968999999816
Q ss_pred ---------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf ---------4025774212276610467876667388753025777789989888742-03523441220
Q gi|254781167|r 160 ---------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 160 ---------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
..|..+.++ ....---+++.++++.. ++|+..--||.+.+++..... ++|||-||-+.
T Consensus 171 ~~gFiY~vs~~GvTG~~~-~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~~~~~ADGvIVGSai 238 (267)
T PRK13129 171 SRGFTYLVSVTGVTGERS-QMENRVESLLQQLRQVT-SKPIAVGFGISGPEQARQVREWGADGAIVGSAF 238 (267)
T ss_pred CCCEEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 898089873466567654-45088999999999834-898178844799999999985499999987899
No 92
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.35 E-value=0.014 Score=38.72 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=82.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCC
Q ss_conf 699982699899999887531045377744256413677666889999855899999999985027-9069998611345
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVD 128 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~ 128 (322)
.+..-.|-.++.+.++.++++ .|+|.|=|- +.+|. ...+.+.++.+++.. ++||-+ |
T Consensus 84 ~v~aaig~~~~~~~r~~~l~~-ag~d~i~ID--------vAhG~-------~~~~~~~ik~ir~~~p~~~Iia----G-- 141 (325)
T cd00381 84 LVGAAVGTREDDKERAEALVE-AGVDVIVID--------SAHGH-------SVYVIEMIKFIKKKYPNVDVIA----G-- 141 (325)
T ss_pred EEEEEECCCHHHHHHHHHHHH-CCCCEEEEE--------CHHCC-------CHHHHHHHHHHHHHCCCCCEEE----C--
T ss_conf 999997668628999999997-699899987--------00034-------5889999999997689975686----4--
Q ss_pred CCCCCCCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCH
Q ss_conf 6653220145543200012201210------0135664025774212276610467876667388--7530257777899
Q gi|254781167|r 129 DQIPAVALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP--DLFIGLNGGLEDM 200 (322)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~--~~~i~~NGdi~~~ 200 (322)
+..+.+-++-+.++|+|.|-| .|-|+..- -+|-..+..|.++.+... .+|||+.|+|.+.
T Consensus 142 ----NV~T~e~a~~L~~~GaD~vkVGiG~GS~CtTr~~t--------GvG~Pq~sai~~~a~~~~~~~v~iiaDGGi~~~ 209 (325)
T cd00381 142 ----NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVT--------GVGVPQATAVADVAAAARDYGVPVIADGGIRTS 209 (325)
T ss_pred ----CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCH
T ss_conf ----56689999999866998999757577776660101--------788745889999999763449858944873310
Q ss_pred HHHHHHHH-CCCCEEEECC
Q ss_conf 89888742-0352344122
Q gi|254781167|r 201 SQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 201 ~~a~~~l~-~~dgvMigRg 218 (322)
-|+.+.+. |+|.||+|.-
T Consensus 210 Gdi~KAla~GAd~VMlG~~ 228 (325)
T cd00381 210 GDIVKALAAGADAVMLGSL 228 (325)
T ss_pred HHHHHHHHCCCCEEEECCH
T ss_conf 7888887528878984621
No 93
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.34 E-value=0.00044 Score=49.93 Aligned_cols=93 Identities=19% Similarity=0.313 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
...-.+.++..++.|+++|.|=-=.+. + .-.+.+++.|.++.+.. .+|+..-|+|+|.+++.+.+. |+|
T Consensus 29 ~gdP~~~ak~f~~~GadelhivDld~a------~---~g~~~n~~~I~~I~~~~-~ipi~vGGGIrs~e~~~~ll~~Gad 98 (253)
T PRK01033 29 VGDPINAVRIFNEKEADELIVLDIDAS------R---KGREPNYELIENLASEC-FMPLCYGGGIKTVEQAKRIFSLGVE 98 (253)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCC------C---CCCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 889999999999879998999947454------2---48801699999999876-9988986881216888999867986
Q ss_pred CEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 234412200012439999998719
Q gi|254781167|r 212 GVMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 212 gvMigRga~~~P~if~~I~~~l~~ 235 (322)
=|.||..++.||-++.++.+.|..
T Consensus 99 kViigs~a~~~p~~i~~~~~~fG~ 122 (253)
T PRK01033 99 KVSISTAALEDPKLITEAAEIYGS 122 (253)
T ss_pred EEEECCHHHHCCHHHHHHHHHCCC
T ss_conf 699998786374165789987799
No 94
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.33 E-value=0.00056 Score=49.12 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=78.9
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99861134566532201455432000122012100135664025774212276610467876667388753025777789
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLED 199 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~ 199 (322)
-||.+- ++.......-.++++..++.|++.|.|=-=. + . ..-.+.+++.|.++.+.. .+|+..-|+|+|
T Consensus 17 ~Vk~~~-~~~~~~~gdP~~~ak~~~~~g~d~lhivDld----~---a--~~~~~~n~~~I~~i~~~~-~ipi~vGGGIrs 85 (232)
T TIGR03572 17 LVKTVQ-FKDPRYIGDPVNAARIYNAKGADELIVLDID----A---S--KRGREPLFELISNLAEEC-FMPLTVGGGIRS 85 (232)
T ss_pred EEECCC-CCCCEECCCHHHHHHHHHHCCCCEEEEEECC----C---C--CCCCCCHHHHHHHHHHHC-CCCEEEEECEEE
T ss_conf 997847-8776578899999999998699999999687----6---4--348821799999999972-985899713303
Q ss_pred HHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 989888742-0352344122000124399999987199
Q gi|254781167|r 200 MSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 200 ~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
.+++.+.++ |+|=|.||..++.||-++.++...+..+
T Consensus 86 ~e~~~~ll~~GadkViigs~a~~~p~~~~~~~~~~G~q 123 (232)
T TIGR03572 86 LEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQ 123 (232)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCC
T ss_conf 89999999769968993454521935778999986994
No 95
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=97.31 E-value=0.00039 Score=50.26 Aligned_cols=158 Identities=21% Similarity=0.255 Sum_probs=92.3
Q ss_pred EEEEE----ECCCHHHHHHHHHHHHCCCCCEEEECCCC----------CHHHHHHHH-------HHHHH--------HHH
Q ss_conf 69998----26998999998875310453777442564----------136776668-------89999--------855
Q gi|254781167|r 50 LALQI----GGADISKLVEAAKIVEDFGYNEINLNVGC----------PSARVHEGS-------FGACL--------MLN 100 (322)
Q Consensus 50 ~~~Ql----~g~~p~~~~~aa~~~~~~g~~~idlN~GC----------P~~~v~~~g-------~GaaL--------l~~ 100 (322)
++.|+ ||.+++.+..+ +.|.|-+|= |..||+..= -|..+ ..+
T Consensus 115 ~I~Qi~sgrFGv~~~~l~~~---------~~iEIKi~QGAKPG~GG~Lpg~KVt~eIA~~R~~~~G~d~iSP~~h~di~s 185 (367)
T pfam01645 115 AIKQVASGRFGVTPEYLNNA---------DAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSPPGVGLISPPPHHDIYS 185 (367)
T ss_pred CEEECCCCCCCCCHHHHCCC---------CEEEEEEECCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 17851367677897683256---------547999825878897883773544899996808999987678633478899
Q ss_pred HHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCHHHH
Q ss_conf 899999999985027-9069998611345665322014554320001220121001356640257742-12276610467
Q gi|254781167|r 101 PDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKD-NRKIPNLDYDI 178 (322)
Q Consensus 101 p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~-~~~~~~~~~~~ 178 (322)
|+-+.+.|..+++.. ++||+||+=.|- .. ..++..+.++|+|.|+|-|.-.-- |=+|.. ..+.|- -|+.
T Consensus 186 ~edL~~~I~~Lr~~~~~~PVgvKl~~~~----~~---~~ia~~~aka~~D~I~IdG~eGGT-GAaP~~~~d~~Gl-P~~~ 256 (367)
T pfam01645 186 IEDLAQLIYDLKEINPKAPISVKLVSGH----GV---GTIAAGVAKAGADIILIDGHDGGT-GASPKTSIKHAGL-PWEL 256 (367)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCC----CH---HHHHHHHHCCCCCEEEECCCCCCC-CCCCHHHHHHCCC-HHHH
T ss_conf 9999999999984178994599981477----68---999998753678889971789867-7554889974424-6999
Q ss_pred -HHH----HHH-HC-CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH
Q ss_conf -876----667-38-875302577778998988874-203523441220001243
Q gi|254781167|r 179 -VYE----IKK-EN-PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 179 -i~~----l~~-~~-~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~i 225 (322)
+.+ |.+ .+ ..+.+++.|++.+..|+...+ =|+|.|.+||+++----+
T Consensus 257 ~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~AlGC 311 (367)
T pfam01645 257 ALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIALGC 311 (367)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999998706757649997699788899999998565354234799998648
No 96
>PRK02747 consensus
Probab=97.31 E-value=0.00046 Score=49.77 Aligned_cols=92 Identities=16% Similarity=0.243 Sum_probs=73.0
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.+.++...+.|+++|.+=-=.+. +++ .+.+++.+.++.+.. .+|+..-|+|+|.+++.+.+. |+|=|
T Consensus 31 dP~~~ak~~~~~Gadelh~vDl~~a------~~~---~~~~~~lI~~i~~~~-~ipi~vGGGIrs~e~~~~ll~~GadkV 100 (257)
T PRK02747 31 DPVEAARAYDAAGADELCFLDITAS------HEN---RGTMLDVVARTAEQC-FMPLTVGGGVRTVDDIRKLLLAGADKV 100 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCC------CCC---CHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 9999999999869998999947677------567---552899999999866-998898488207388789987699689
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44122000124399999987199
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~~ 236 (322)
.||..++.||-++.++.+.|..+
T Consensus 101 iigs~a~~np~l~~~~~~~fG~q 123 (257)
T PRK02747 101 SINSAAVARPEFVAEAADKFGSQ 123 (257)
T ss_pred EECHHHHHCCHHHHHHHHHCCCE
T ss_conf 83444654834777788755965
No 97
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.30 E-value=0.00076 Score=48.16 Aligned_cols=105 Identities=15% Similarity=0.238 Sum_probs=76.8
Q ss_pred EEEEECCCCCCC-CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 998611345665-3220145543200012201210013566402577421227661046787666738875302577778
Q gi|254781167|r 120 TVKCRIGVDDQI-PAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE 198 (322)
Q Consensus 120 svK~RlG~~~~~-~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~ 198 (322)
.||..-|-.+.. .+..-.++++.+.+.|++++.|== +.+ .+ .. +.+++.+.++.+.. .+|+..-|||+
T Consensus 14 ~Vrl~~G~~~~~~~~~dP~~~a~~~~~~Ga~~lhvvD----Lda---a~--g~-~~N~~~I~~i~~~~-~~piqvGGGIr 82 (231)
T PRK13586 14 AVKRIRGVEGTGLVLGDPLKIAEELYNEGYDSIHVVD----LDA---AE--GK-GDNEEYIKRICKIG-FSWIQVGGGIR 82 (231)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE----CCC---CC--CC-CCHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf 7689771579887668999999999987999899996----715---68--99-84399999999745-98579856717
Q ss_pred CHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9989888742-035234412200012439999998719
Q gi|254781167|r 199 DMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 199 ~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~~ 235 (322)
|.+++.+.++ |+|=|.||..++.||-+|.++...+..
T Consensus 83 s~e~~~~~l~~Ga~kViigS~a~~np~~~~~~~~~~G~ 120 (231)
T PRK13586 83 DVEKAERLLSYDCSAIVMSTLPFTNPDTFRRIVAGIGE 120 (231)
T ss_pred CHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHHHHHCC
T ss_conf 69999999977998899768887695999999998499
No 98
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=97.30 E-value=0.0043 Score=42.62 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99988753104537774425641367766688999985589999999998502790699986113456653220145543
Q gi|254781167|r 62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVK 141 (322)
Q Consensus 62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~ 141 (322)
+.++ .-+.+.|+|.|-+-+--- ..|+-+.++++.+++. ..++-.-| .+ ++=+.
T Consensus 54 ~~ev-~~l~~aGadiIA~DaT~R--------------~RP~~~~~lv~~i~~~-~~l~MAD~-------st----~eea~ 106 (192)
T pfam04131 54 MKDI-DELANAGADIIALDGTDR--------------PRPVDIESFIKRIKEK-GQLAMADC-------ST----FEEGL 106 (192)
T ss_pred HHHH-HHHHHCCCCEEEEECCCC--------------CCCCCHHHHHHHHHHH-CCEEEEEC-------CC----HHHHH
T ss_conf 9999-999985999999846789--------------8975899999999981-99889974-------99----99999
Q ss_pred HHCCCCCCHH--HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 2000122012--100135664025774212276610467876667388753025777789989888742-0352344122
Q gi|254781167|r 142 SIKKSGVNGI--WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 142 ~~~~~g~~~i--tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
.+.++|+|.| |+.|=| +... ..+ .||+.++++++. .+|+++-|.|++++++.+.++ |++.|-||.+
T Consensus 107 ~A~~~G~D~I~TTL~GYT-------~~t~-~~~-pD~~ll~~l~~~--~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsA 175 (192)
T pfam04131 107 NAHKLGVDIVGTTLSGYT-------GGSN-PAE-PDFQLVKTLSEA--GCFVIAEGRYNTPELAKKAIEIGADAVTVGSA 175 (192)
T ss_pred HHHHCCCCEEECCCCCCC-------CCCC-CCC-CCHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999859999982325578-------9999-999-978999999868--99399857989999999999839989998965
Q ss_pred CCCHHHHH
Q ss_conf 00012439
Q gi|254781167|r 219 AYKNSAML 226 (322)
Q Consensus 219 a~~~P~if 226 (322)
+-+|...
T Consensus 176 -ITrP~~I 182 (192)
T pfam04131 176 -ITRLEEI 182 (192)
T ss_pred -CCCHHHH
T ss_conf -3798999
No 99
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.29 E-value=0.0008 Score=48.00 Aligned_cols=91 Identities=21% Similarity=0.313 Sum_probs=71.8
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.++++...+.|++.+.|== +.+ . .+-.+.+++.+.++.+.. .+|+..-|+|+|.+++.+.++ |+|=|
T Consensus 30 dP~~~A~~~~~~Ga~~lhvvD----Ld~---A--~~g~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~~~~~l~~GadkV 99 (241)
T PRK00748 30 DPLAQAQAWQDQGAEWLHLVD----LDG---A--FAGRPVNLELIEAIVAAV-DIPVQLGGGIRDLETVEAYLDAGVARV 99 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEE----CCC---C--CCCCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 999999999987999899997----854---2--028820799999999867-999998277074999999997697758
Q ss_pred EEECCCCCHHHHHHHHHHHHCC
Q ss_conf 4412200012439999998719
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~ 235 (322)
.||..++.||-++.++...|..
T Consensus 100 vigS~a~~n~~~i~~~~~~~g~ 121 (241)
T PRK00748 100 IIGTAAVKNPELVKEACKKFPG 121 (241)
T ss_pred EECCHHHHCHHHHHHHHHHCCC
T ss_conf 8647103396899999862355
No 100
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.28 E-value=0.00085 Score=47.82 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=76.6
Q ss_pred EEEECC-CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 986113-4566532201455432000122012100135664025774212276610467876667388753025777789
Q gi|254781167|r 121 VKCRIG-VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLED 199 (322)
Q Consensus 121 vK~RlG-~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~ 199 (322)
|+..-| ++....+..-+++++.+.+.|++.++|= -+.| . .+-.+.+++.+.++.+.. .+|+..-|+|+|
T Consensus 17 Vrl~~G~~~~~~~~~dP~~~a~~~~~~Ga~~lhiv----DLd~---a--~~g~~~n~~~I~~i~~~~-~~pi~vGGGIrs 86 (240)
T PRK13585 17 VQLVQGEPGTETSYGDPVEVAKRWVDAGAKTLHLV----DLDG---A--FEGSRKNADIIEKIVEAT-DVSIQLGGGIRS 86 (240)
T ss_pred EEEECCCCCCCEECCCHHHHHHHHHHCCCCEEEEE----ECCC---C--CCCCCCHHHHHHHHHHHC-CCCEEEECCCCC
T ss_conf 97146101786366899999999998799979999----8977---2--118944499999999737-977899788587
Q ss_pred HHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 989888742-03523441220001243999999871
Q gi|254781167|r 200 MSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 200 ~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
.+++.+.++ |+|=|.||..++.||-++.++...|.
T Consensus 87 ~~~i~~~l~~Ga~kvvigs~~~~~~~~~~~i~~~~G 122 (240)
T PRK13585 87 VEDAASLLDLGVDRVILGTAAIENPELVRELSDEFG 122 (240)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHC
T ss_conf 999999997699899939811318428899998739
No 101
>PRK02145 consensus
Probab=97.28 E-value=0.00048 Score=49.61 Aligned_cols=92 Identities=13% Similarity=0.237 Sum_probs=73.5
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.+.++...+.|++.|.|=-=.+. +. -.+.+++.+.++.+.. .+|+..-|+|+|.+++.+.++ |+|=|
T Consensus 32 dP~~~a~~~~~~GadelhivDld~a------~~---~~~~~~~~I~~i~~~~-~iPi~vGGGIrs~e~~~~ll~~GadkV 101 (257)
T PRK02145 32 DPVEIARRYDEQGADELTFLDITAT------SD---GRDLILPIIEAVASQV-FIPLTVGGGVRAVEDVRRLLNAGADKV 101 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCC------CC---CCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 9999999999879998999978887------66---7540899999999656-874896277304688999998199889
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44122000124399999987199
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~~ 236 (322)
.||..++.||-++.++...|..+
T Consensus 102 ii~s~a~~np~~v~~~~~~fG~q 124 (257)
T PRK02145 102 SMNSSAVANPQLVRDAADKYGSQ 124 (257)
T ss_pred EEHHHHHHCCCHHHHHHHHCCCC
T ss_conf 84155665930224578766983
No 102
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.27 E-value=0.00034 Score=50.73 Aligned_cols=159 Identities=21% Similarity=0.240 Sum_probs=94.2
Q ss_pred CCEEEEE----ECCCHHHHHHHHHHHHCCCCCEEEECCCC----------CHHHHHHHHH-------HHHH--------H
Q ss_conf 8469998----26998999998875310453777442564----------1367766688-------9999--------8
Q gi|254781167|r 48 KPLALQI----GGADISKLVEAAKIVEDFGYNEINLNVGC----------PSARVHEGSF-------GACL--------M 98 (322)
Q Consensus 48 ~p~~~Ql----~g~~p~~~~~aa~~~~~~g~~~idlN~GC----------P~~~v~~~g~-------GaaL--------l 98 (322)
.-++.|+ ||.+++.+.. ++.|.|-+|= |..||+..=+ |..+ .
T Consensus 125 ~~~i~Qi~sg~fGv~~~~~~~---------v~~iEIK~gQGAKpG~GG~Lpg~KVt~eIA~~R~~~~G~d~iSP~~h~~i 195 (392)
T cd02808 125 GDIIKQVASGRFGVRPEYLNK---------ADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDI 195 (392)
T ss_pred CCEEEEECCCCCCCCHHHCCC---------CCEEEEEECCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 787998447756768899075---------13699983378889988807645457999988089999887799765666
Q ss_pred HHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC-CCCCC-CCH
Q ss_conf 558999999999850279-069998611345665322014554320001220121001356640257742-12276-610
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKD-NRKIP-NLD 175 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~-~~~~~-~~~ 175 (322)
.+|+-+.+.|+.+++... +||++|+=.|- .. .+++..+..+++|.|||-|.-.= -|-+|.. ..+.| |..
T Consensus 196 ~s~edl~~~I~~LR~~~~~kpVgvKl~~g~----~~---~~l~~~~~~~~~DfItIDG~eGG-TGAaP~~~~d~~GlP~~ 267 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH----GE---GDIAAGVAAAGADFITIDGAEGG-TGAAPLTFIDHVGLPTE 267 (392)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCC----CH---HHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHCCCCCHH
T ss_conf 999999999999997289980799968889----88---99999999647999996079987-54142999974997389
Q ss_pred HHHHHH----HHHH-C-CCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHH
Q ss_conf 467876----6673-8-8753025777789989888742-0352344122000124
Q gi|254781167|r 176 YDIVYE----IKKE-N-PDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 176 ~~~i~~----l~~~-~-~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~ 224 (322)
..+.+ |.+. + ..+.+++.|++.+..|+...+. |+|.|.+||+++--=-
T Consensus 268 -~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~~a~~~m~alG 322 (392)
T cd02808 268 -LGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALG 322 (392)
T ss_pred -HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHHHHH
T ss_conf -9999999999976996763799638857478999999867564510569999874
No 103
>PRK02621 consensus
Probab=97.27 E-value=0.00047 Score=49.67 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=72.9
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.++++...+.|++.|.|=-=.+. ++ -.+.+++.+.++.+.. .+|+..-|+|+|.+++.+.++ |+|=|
T Consensus 31 dP~~~ak~~~~~gad~lhivDld~a------~~---~~~~~~~~I~~i~~~~-~ipi~vGGGIrs~e~~~~ll~~GadkV 100 (254)
T PRK02621 31 DPVELACRYSQAGADELVFLDITAT------HE---GRATLIDVVYRTAEQV-FIPLTVGGGISSLEGIKELLRAGADKV 100 (254)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCC------CC---CCHHHHHHHHHHHHHC-CCCEEEECCEEEHHHHHHHHHCCCCEE
T ss_conf 9999999999859999999826676------56---7542899999999867-985899633535799999997499989
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44122000124399999987199
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~~ 236 (322)
.||..++.||-++.++...|..+
T Consensus 101 ii~s~a~~np~~~~~~~~~fG~q 123 (254)
T PRK02621 101 SLNSAAVRDPDLVRQASDRFGSQ 123 (254)
T ss_pred EECCHHHHCCCHHHHHHHHCCCC
T ss_conf 99886764735445568756984
No 104
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=97.26 E-value=0.0014 Score=46.22 Aligned_cols=134 Identities=22% Similarity=0.380 Sum_probs=89.6
Q ss_pred CCCCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 74578469998269989--9999887531045377744256413677666889999855899999999985027906999
Q gi|254781167|r 44 STQEKPLALQIGGADIS--KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTV 121 (322)
Q Consensus 44 ~~~e~p~~~Ql~g~~p~--~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsv 121 (322)
|.+-+|+.-||..-+.+ +-++|.+.++|.-.. | -+|+|+.+=++.++++ ..=+-|
T Consensus 82 h~D~~~~ld~i~~~~~~~P~~~~a~R~LQELyAa--------P--------------l~~eLl~~ri~~vr~a-G~i~Av 138 (376)
T TIGR01304 82 HEDPEPLLDKIAEADKEDPDQAEATRLLQELYAA--------P--------------LKPELLGKRIAEVRDA-GVITAV 138 (376)
T ss_pred HCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------C--------------CCHHHHHHHHHHHHHC-CCEEEE
T ss_conf 1377899999998751588478998888998636--------7--------------9864789999999726-848999
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 86113456653220145543200012201210013566402577421227661046787666738875302577778998
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS 201 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~ 201 (322)
|+ +.....+|++.+.+||+|.|.|.|=+-.-...|+. ..-++|. +++..++ ++||+ -|++.|++
T Consensus 139 --~l------sPq~~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e---~~E~LnL---k~fi~eL-DvPVv-~Ggv~~Y~ 202 (376)
T TIGR01304 139 --RL------SPQNASKLAPVVVEAGADLLVIQGTVVSAEHVSSE---SGEPLNL---KKFIQEL-DVPVV-AGGVVTYT 202 (376)
T ss_pred --EE------CCHHHHHHHHHHHHHCCCEEEEHHHHHHHEEECCC---CCCCHHH---HHHHHHC-CCCEE-ECCCCCHH
T ss_conf --86------65316788899997173004200123201004688---8872148---8897548-98878-83853088
Q ss_pred HHHHHH-HCCCCEEEE
Q ss_conf 988874-203523441
Q gi|254781167|r 202 QALKIL-PSVDGVMIG 216 (322)
Q Consensus 202 ~a~~~l-~~~dgvMig 216 (322)
.|+.++ +|+.||+||
T Consensus 203 ~ALhLMRtGAagvlVG 218 (376)
T TIGR01304 203 TALHLMRTGAAGVLVG 218 (376)
T ss_pred HHHHHHHHCCEEEEEC
T ss_conf 9999863011378864
No 105
>PRK03220 consensus
Probab=97.26 E-value=0.00064 Score=48.72 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=73.3
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-+++++..++.|+++|.|=-=. | .. +-.+.+++.+..+.+.. .+|+..-|+|+|.+++...++ |+|=|
T Consensus 32 dP~~~a~~~~~~G~d~lhivDld----~---a~--~g~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~~~~ll~~GadkV 101 (257)
T PRK03220 32 DPVELAAVYDAEGADELTFLDVT----A---SS--SGRATMLDVVRRTAEQV-FIPLTVGGGVRTVEDVDSLLRAGADKV 101 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECC----C---CC--CCCHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 99999999998699989999088----8---75--67630799999998506-964898478587999999998197508
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44122000124399999987199
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~~ 236 (322)
.||..++.||-++.++.+.|..+
T Consensus 102 vigs~a~~~p~~~~~~~~~fG~q 124 (257)
T PRK03220 102 SVNTAAIARPELLAELARRFGSQ 124 (257)
T ss_pred ECHHHHHHCCHHHHHHHHHCCCE
T ss_conf 72066775947778999870986
No 106
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.25 E-value=0.014 Score=38.73 Aligned_cols=168 Identities=19% Similarity=0.242 Sum_probs=95.9
Q ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHCCCCEE
Q ss_conf 7846999826998--9999988753104537774425641367----766688999985--5899999999985027906
Q gi|254781167|r 47 EKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLML--NPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 47 e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~p 118 (322)
..-++.=+..++| +...++++.+.+.|+|.|.|-+-..-|. |.....--||-. +++.+.++++.+++..++|
T Consensus 14 ~~ali~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~P 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 96168887073898789999999999769999997898888666589999999999977987778999999986067998
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH--------
Q ss_conf 999861134566532201455432000122012100-------------------------------13566--------
Q gi|254781167|r 119 VTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI-------- 159 (322)
Q Consensus 119 vsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~-------- 159 (322)
+-+=+ +-+.--.--..+|++.+.++|++.+.|. -|-..
T Consensus 94 ivlMt---Y~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~GF 170 (263)
T CHL00200 94 IVIFT---YYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGC 170 (263)
T ss_pred EEEEE---EHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 89986---206888738899999999849986874799978889999999855862166647899699999999728980
Q ss_pred -----HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf -----4025774212276610467876667388753025777789989888742-03523441220
Q gi|254781167|r 160 -----LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 160 -----~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
..|..+.++.. ..---+++.++|+. .++|+..--||.+.+++..... ++|||-||-+.
T Consensus 171 iY~vs~~GvTG~~~~~-~~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSai 234 (263)
T CHL00200 171 IYLVSTTGVTGLKTEL-DKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEEECCCCCCCCCCC-HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 8985336556875445-18799999999973-6998487358799999999974599999987899
No 107
>PRK13135 consensus
Probab=97.24 E-value=0.011 Score=39.63 Aligned_cols=170 Identities=18% Similarity=0.204 Sum_probs=98.9
Q ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCE
Q ss_conf 57846999826998--999998875310453777442564136----7766688999985--589999999998502790
Q gi|254781167|r 46 QEKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~ 117 (322)
....++.=+..++| +...+..+.+.+.|+|.|.|-+=-.-| .|.....--||-. +.+.+.++++.+++..++
T Consensus 15 ~~~ali~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~ 94 (267)
T PRK13135 15 NTKALVTFITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQV 94 (267)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99548988717189989999999999975999999789989866658999999999997698499999999986335899
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH-------------------------------HHHH-------
Q ss_conf 69998611345665322014554320001220121001-------------------------------3566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA-------------------------------RKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~-------------------------------Rt~~------- 159 (322)
|+-+= |+-+.--..-..+|++.+.++|++.+.|.- |-..
T Consensus 95 PivlM---~Y~N~i~~yG~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~G 171 (267)
T PRK13135 95 PIVLM---GYYNPIFAYGLERFAADAAAAGVDGVLLVDLPPEEAEEFKACADRHGLDVIFLLTPTSDESRIRTVARLGRG 171 (267)
T ss_pred CEEEE---ECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 88998---423099884689999999974997476378997888999999987296189980898957999999961898
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf ------4025774212276610467876667388753025777789989888742035234412200
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAY 220 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~ 220 (322)
..|..+.+.... .---+.+.++|+. .++|+..--||.+.+++.....++|||-||-+..
T Consensus 172 FiY~Vs~~GvTG~~~~~~-~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~i~~~ADGvIVGSaiV 236 (267)
T PRK13135 172 FVYYVSVTGVTGARSGVE-ATVGGNVAKIREK-ITVPVVVGFGISTPQQAADVAAMADGVVVGSALV 236 (267)
T ss_pred EEEEEECCCCCCCCCCCH-HHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHCCCCEEEECHHHH
T ss_conf 189985456667764444-8899999999860-6898489816799999999980599999878999
No 108
>PRK13118 consensus
Probab=97.24 E-value=0.0093 Score=40.14 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=98.2
Q ss_pred CCCCCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHCC
Q ss_conf 745784-6999826998--999998875310453777442564136----776668899998--5589999999998502
Q gi|254781167|r 44 STQEKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLM--LNPDIVGDCIAAMCKA 114 (322)
Q Consensus 44 ~~~e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl--~~p~~~~~iv~~~~~~ 114 (322)
..+.+| ++.=+.+++| +...+.++.+.+.|+|.|.|-+--.-| .|.....--||- -+.+.+.++++++++.
T Consensus 12 k~~~~~ali~yitaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~ 91 (269)
T PRK13118 12 KAQNRKALVPFVTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQG 91 (269)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 97699559988717189989999999999976999999789888866657999999999996798688999999998643
Q ss_pred -CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH---
Q ss_conf -7906999861134566532201455432000122012100-------------------------------13566---
Q gi|254781167|r 115 -LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI--- 159 (322)
Q Consensus 115 -~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~--- 159 (322)
.++|+-+=+ +-+.--..-..+|++.+.++|++.+.|. .|-..
T Consensus 92 ~~~~PivlM~---Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~ 168 (269)
T PRK13118 92 DQTTPVVLMG---YLNPIEIYGYERFVAQAKEAGVDGLILVDLPPEEADELRAPAQAHGLDFIRLTSPTTSDERLPRVLE 168 (269)
T ss_pred CCCCCEEEEE---ECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHHHH
T ss_conf 8999989974---0007878639999999998599746458999789999999999759846403698987899999984
Q ss_pred ----------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ----------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ----------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ----------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.+. ...+---+.+.++++. .++|+..--||.+.+++......+|||-||-+
T Consensus 169 ~a~gFiY~vs~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~v~~~aDGvIVGSa 235 (269)
T PRK13118 169 HASGYLYYVSLAGVTGAAA-LDTEHVEEAVARLRRH-TDLPVVVGFGIRDAESAAAIARLADGVVVGSA 235 (269)
T ss_pred CCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHCCCCEEEECHH
T ss_conf 3788389985456678776-6719899999999962-58981787167999999999800999998589
No 109
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.23 E-value=0.00048 Score=49.60 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=73.1
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 201455432000122012100135664025774212276610467876667388753025777789989888742-0352
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
-.-.+.++.+.+.|++.|.+=-=.+. ++++ +.+++.+.++.+.. .+|+..-|||+|.+++.+.++ |+|=
T Consensus 30 gdP~~~a~~~~~~gadel~ivDld~s------~~~~---~~~~~~I~~i~~~~-~~pi~vGGGIrs~e~~~~ll~~Gadk 99 (253)
T PRK02083 30 GDPVELAKRYDEEGADELVFLDITAS------SEGR---DTMKDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADK 99 (253)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCC------CCCC---HHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 89999999999879998999956266------4577---41799999999863-98778517621389876898779878
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 344122000124399999987199
Q gi|254781167|r 213 VMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 213 vMigRga~~~P~if~~I~~~l~~~ 236 (322)
|.||..++.||-++.++.+.|..+
T Consensus 100 Vvigs~a~~~p~~i~~~~~~~G~q 123 (253)
T PRK02083 100 VSINSAAVADPELITELADRFGSQ 123 (253)
T ss_pred EEECCHHHHCCCHHHHHHHHCCCE
T ss_conf 999984653853557889746983
No 110
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.19 E-value=0.00051 Score=49.43 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=72.6
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 201455432000122012100135664025774212276610467876667388753025777789989888742-0352
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
..-.++++...+.|++.|.|=-=.+. + +-.+.+++.+.++.+.. .+|+..-|+|+|.+++.+.++ |+|=
T Consensus 27 gdP~~~a~~~~~~gadelhivDld~a------~---~g~~~n~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~~l~~Gadk 96 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITAS------S---EGRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADK 96 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCC------C---CCCCCHHHHHHHHHHHC-CCCEEEEEEEEEHHHHHHHHHCCCCE
T ss_conf 89999999999869999999706732------0---37700799999999867-98689985066479999999779978
Q ss_pred EEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 34412200012439999998719
Q gi|254781167|r 213 VMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 213 vMigRga~~~P~if~~I~~~l~~ 235 (322)
|.||..++.||-++.++...|..
T Consensus 97 Vvigs~~~~n~~~~~~~~~~~Gs 119 (243)
T cd04731 97 VSINSAAVENPELIREIAKRFGS 119 (243)
T ss_pred EEECCCCCCCCCHHHHHHHHCCC
T ss_conf 99898442377143578875699
No 111
>PRK00830 consensus
Probab=97.18 E-value=0.00031 Score=51.04 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=74.4
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 201455432000122012100135664025774212276610467876667388753025777789989888742-0352
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
..-.+.++..++.|++.|.|--=.+. + +-.+.+++.+.++.+.. .+|+..-|||+|.+++.+++. |+|=
T Consensus 34 gdP~~~ak~~~~~gadelhivDld~a------~---~g~~~~~~~I~~i~~~~-~~pi~vGGGIrs~e~~~~ll~~Gadk 103 (273)
T PRK00830 34 GDPVELAKRYYEDGADELVFLDITAS------H---EGRATMIDVIERTAEEV-FIPLTVGGGIRSIEDIRQILRAGADK 103 (273)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECC------C---CCCCCHHHHHHHHHHHC-CCCEEEECCEEECCCHHHHHHCCCCE
T ss_conf 89999999999879998999953246------4---68842799999999866-99589608843773289999769863
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 344122000124399999987199
Q gi|254781167|r 213 VMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 213 vMigRga~~~P~if~~I~~~l~~~ 236 (322)
|.||..|+.||-++.++.+.|..+
T Consensus 104 VvIgS~a~~np~~v~~~~~~fGsq 127 (273)
T PRK00830 104 VSVNTAAVKNPEFIREASDIFGSQ 127 (273)
T ss_pred EECHHHHHHCCHHHHHHHHHCCCC
T ss_conf 983798985907789999876990
No 112
>PRK13121 consensus
Probab=97.18 E-value=0.012 Score=39.39 Aligned_cols=169 Identities=21% Similarity=0.268 Sum_probs=94.0
Q ss_pred CCCCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHCC-
Q ss_conf 45784-6999826998--9999988753104537774425641367----76668899998--5589999999998502-
Q gi|254781167|r 45 TQEKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLM--LNPDIVGDCIAAMCKA- 114 (322)
Q Consensus 45 ~~e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl--~~p~~~~~iv~~~~~~- 114 (322)
.+.++ ++.=+.+++| +...++++.+.+.|+|.|.|-+=-.-|. |.....--||= -+++.+.++++.+++.
T Consensus 13 ~~~~~ali~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~ 92 (265)
T PRK13121 13 AQGRKALIPFITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRETN 92 (265)
T ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 76995589887071899899999999999769999997898899776589999999999977998467799999831037
Q ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHHH----
Q ss_conf 790699986113456653220145543200012201210-------------------------------013566----
Q gi|254781167|r 115 LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKAI---- 159 (322)
Q Consensus 115 ~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~~---- 159 (322)
.++|+-+=+ +-+.--.--..+|++.+.++|++.+.| +.|-..
T Consensus 93 ~~~PivlM~---Y~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~ 169 (265)
T PRK13121 93 QTTPVVLMG---YANPIERMGYDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAAGIDPIFLLAPTSTDERIAAVARV 169 (265)
T ss_pred CCCCEEEEE---HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 999989862---14599997199999999872987343489998999999999986599668995899989999999962
Q ss_pred ---------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ---------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ---------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ---------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+........ --+.+.++++. .++|+..--||.+.+++......+|||-||-+
T Consensus 170 ~~gFiY~Vs~~GvTG~~~~~~~~-~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~v~~~ADGvIVGSa 235 (265)
T PRK13121 170 ASGYVYYVSLKGVTGAATLDVSS-VAAKLPAIRSH-VPLPVGVGFGIRDAATARAVAEVADAVVIGSR 235 (265)
T ss_pred CCCEEEEEECCCCCCCCCCCHHH-HHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCEEEECHH
T ss_conf 89809997555566777566288-99999999854-79985997688989999999811999998489
No 113
>KOG0134 consensus
Probab=97.17 E-value=0.0039 Score=42.88 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=106.4
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECCCC--C-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EEE
Q ss_conf 9826998999998875310453777442564--1-----36776--668899998558999999999850279069-998
Q gi|254781167|r 53 QIGGADISKLVEAAKIVEDFGYNEINLNVGC--P-----SARVH--EGSFGACLMLNPDIVGDCIAAMCKALSIPV-TVK 122 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GC--P-----~~~v~--~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv-svK 122 (322)
||-.--.+.+..||+.+.+.|||+|.|+-.- = +|.+- ...+|.++-.......+++.+++++. |- ++=
T Consensus 167 ~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~I--p~s~~~ 244 (400)
T KOG0134 167 QIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEI--PASRVF 244 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCE
T ss_conf 878999999999999898638875898235412233331687787644357606540103189999999860--511434
Q ss_pred EECC----C-CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH----HHHHHHHHCCCCCCCC
Q ss_conf 6113----4-56653220145543200012201210013566402577421227661046----7876667388753025
Q gi|254781167|r 123 CRIG----V-DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYD----IVYEIKKENPDLFIGL 193 (322)
Q Consensus 123 ~RlG----~-~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~----~i~~l~~~~~~~~i~~ 193 (322)
+|+- + +...+.+.....+..+++.|.+.+-+-+.+ .+.+...-++|..-++.|. +.-.++..+..+.|.+
T Consensus 245 l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~-~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a 323 (400)
T KOG0134 245 LRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGT-FLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYA 323 (400)
T ss_pred EEECCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHCCCCH-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 7825833443326654424888999985354301215730-434311023011455320201335567778756868972
Q ss_pred CCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 777789989888742--035234412200012439999998
Q gi|254781167|r 194 NGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 194 NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~ 232 (322)
+|+..+.+.+.+.++ .+|+|-.||-.+.||-+-..+...
T Consensus 324 ~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134 324 GGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEECCHHCCCCCHHHHHHHC
T ss_conf 58745789999998557750687341220387646898717
No 114
>PRK04281 consensus
Probab=97.16 E-value=0.00062 Score=48.83 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=72.8
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.+.++..++.|++.|.+=- +.+ . ....+.+++.+.++.+.. .+|+..-|||+|.+++.+.++ |+|=|
T Consensus 31 dP~~~ak~~~~~GadelhivD----ld~---a--~~~~~~~~~~I~~i~~~~-~vpi~vGGGIrs~e~~~~ll~~GadkV 100 (254)
T PRK04281 31 DPVEAAKRYNGEGADELTFLD----ITA---S--SDNRDTILHIIEEVAGQV-FIPLTVGGGVRTVADIRRLLNAGADKV 100 (254)
T ss_pred CHHHHHHHHHHCCCCEEEEEE----CCC---C--CCCCHHHHHHHHHHHHHC-CCCEEEECCEEECHHHHHHHHCCCCEE
T ss_conf 999999999986999999996----889---8--777530899999998507-962899777545188999997699889
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44122000124399999987199
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~~ 236 (322)
.||..++.||-++.++...|..+
T Consensus 101 iigs~a~~np~~l~~~~~~fG~q 123 (254)
T PRK04281 101 SINTAAVTRPDLIDEAAGFFGSQ 123 (254)
T ss_pred EECHHHHHCCHHHHHHHHHCCCE
T ss_conf 97776764926767678755982
No 115
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=97.12 E-value=0.0057 Score=41.72 Aligned_cols=129 Identities=19% Similarity=0.297 Sum_probs=80.5
Q ss_pred ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCC
Q ss_conf 2699899999887531045377744256413677666889999855899999999985027-906999861134566532
Q gi|254781167|r 55 GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPA 133 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~ 133 (322)
.|-.++.+.++..+++ .|+|.|=|- + ..| +-..+.+.++.+++.. ++||-+ | +
T Consensus 218 VG~~~~~~eRa~~Lv~-aGvDvivID--t------AhG-------hs~~vi~~ik~ik~~~p~~~iIa----G------N 271 (467)
T pfam00478 218 VGTRDDDLERAEALVE-AGVDVIVID--S------AHG-------HSEYVLEMIKWIKKKYPDLDVIA----G------N 271 (467)
T ss_pred ECCCHHHHHHHHHHHH-CCCCEEEEE--C------CCC-------CCHHHHHHHHHHHHCCCCCCEEE----E------E
T ss_conf 0678659999999987-699889973--4------454-------41889999999874078773785----1------0
Q ss_pred CCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHH
Q ss_conf 20145543200012201210------0135664025774212276610467876667---38875302577778998988
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKK---ENPDLFIGLNGGLEDMSQAL 204 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~---~~~~~~i~~NGdi~~~~~a~ 204 (322)
..+.+-++.+.++|+|.|-| -|-|++..|.+ ......|.++.+ .. .+|||+-|+|...-|+.
T Consensus 272 VaT~e~a~~Li~aGAD~vKVGiGpGSiCTTR~v~GvG--------~PQ~tAv~~~a~~a~~~-~vpiIADGGi~~sGDi~ 342 (467)
T pfam00478 272 VVTAEAARELIDAGADAVKVGIGPGSICTTREVAGVG--------RPQLTAVYEVADAARKL-GVPVIADGGIRYSGDIA 342 (467)
T ss_pred ECCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHH
T ss_conf 0589999999970777577556688656564203667--------75087999999998656-98799447623304899
Q ss_pred HHHH-CCCCEEEECC
Q ss_conf 8742-0352344122
Q gi|254781167|r 205 KILP-SVDGVMIGRA 218 (322)
Q Consensus 205 ~~l~-~~dgvMigRg 218 (322)
+.+. |+|.||+|.-
T Consensus 343 KAlaaGAd~VMlGsl 357 (467)
T pfam00478 343 KALAAGASAVMLGSL 357 (467)
T ss_pred HHHHCCCCEEEECHH
T ss_conf 998728988987722
No 116
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.12 E-value=0.013 Score=39.15 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=91.5
Q ss_pred CEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECC--CCCH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 46999826998--9999988753104537774425--6413--6776668899998--5589999999998502790699
Q gi|254781167|r 49 PLALQIGGADI--SKLVEAAKIVEDFGYNEINLNV--GCPS--ARVHEGSFGACLM--LNPDIVGDCIAAMCKALSIPVT 120 (322)
Q Consensus 49 p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~--GCP~--~~v~~~g~GaaLl--~~p~~~~~iv~~~~~~~~~pvs 120 (322)
-++.=+..++| +...+.++.+.+.|+|.|.|-+ ..|. ..|.....--||- -+.+.+.++++.+++..++|+-
T Consensus 10 ali~y~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~piv 89 (256)
T PRK13111 10 ALIPYITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIV 89 (256)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 68988707089989999999999965999999788878876657999999999997799699999999998606899889
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH----------
Q ss_conf 9861134566532201455432000122012100-------------------------------13566----------
Q gi|254781167|r 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI---------- 159 (322)
Q Consensus 121 vK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~---------- 159 (322)
+=+ +-+.--..-..+|++.+.++|++.+.|. -|-..
T Consensus 90 lM~---Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY 166 (256)
T PRK13111 90 LMT---YYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEEAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVY 166 (256)
T ss_pred EEE---ECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 985---03089870999999999975997798169997888999999997598089996999988999999962698599
Q ss_pred ---HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf ---402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 ---LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 ---~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
..|..+.++ ..+.---+++.++|+. .++|+..--||.+.+++..+.+++|||-||-+.
T Consensus 167 ~vs~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pi~vGFGIs~~e~v~~~~~~aDGvIVGSai 227 (256)
T PRK13111 167 YVSRAGVTGARS-ADAADVADLLARLKAH-TDLPVAVGFGISTPEQAAAIAEGADGVIVGSAL 227 (256)
T ss_pred EEECCCCCCCCC-CCHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 985677678876-6628899999999870-689758852889999999997459999986899
No 117
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.11 E-value=0.0094 Score=40.10 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=74.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCC
Q ss_conf 699982699899999887531045377744256413677666889999855899999999985027-9069998611345
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVD 128 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~ 128 (322)
++.---|-.++.+.++..+++ .|+|.|=|-..- -+...+.+.++.+++.. ++||-+ |
T Consensus 228 ~VgAAVg~~~~~~eRa~~Lv~-aGvDvlvIDtAh---------------Ghs~~v~~~ik~ik~~~p~v~vIa----G-- 285 (499)
T PTZ00314 228 LVGAAISTREEDKERAAALID-AGVDVLVLDSSQ---------------GNSIYQIDFIKWIKSTYPHLEVIA----G-- 285 (499)
T ss_pred EEEEEECCCCCHHHHHHHHHH-CCCCEEEEECCC---------------CCCHHHHHHHHHHHHHCCCCCEEE----E--
T ss_conf 999994788048999999998-699899981688---------------772789999999885279884676----4--
Q ss_pred CCCCCCCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCH
Q ss_conf 6653220145543200012201210------01356640257742122766104678766673--887530257777899
Q gi|254781167|r 129 DQIPAVALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKE--NPDLFIGLNGGLEDM 200 (322)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~--~~~~~i~~NGdi~~~ 200 (322)
+..+.+-++.+.++|++.|-| -|-|++.-|. |...+..|.++.+. -..+|||+-|+|...
T Consensus 286 ----NVaT~~~a~~Li~aGAD~vkVGiGpGSiCTTR~v~Gv--------GvPq~tAv~~~a~~a~~~gvpiIADGGIr~s 353 (499)
T PTZ00314 286 ----NVVTQDQAKNLIDAGADGIRIGMGSGSICTTQEVCAV--------GRPQATAVYKVARYAHSRGVPCIADGGIRSS 353 (499)
T ss_pred ----EECHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--------CCCHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf ----3310999999997499879975358855104643466--------7860567999999864499859914784643
Q ss_pred HHHHHHHH-CCCCEEEECC
Q ss_conf 89888742-0352344122
Q gi|254781167|r 201 SQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 201 ~~a~~~l~-~~dgvMigRg 218 (322)
-|+.+.+. |+|.||+|.-
T Consensus 354 GDi~KAlAaGAd~VMlGsl 372 (499)
T PTZ00314 354 GDIVKALALGASCVMLGSM 372 (499)
T ss_pred HHHHHHHHCCCCEEEECCC
T ss_conf 1899998728987860841
No 118
>PRK01659 consensus
Probab=97.10 E-value=0.00077 Score=48.11 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=72.5
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.+.++...+.|+++|.+=-=.+. + +-.+.+++.+.++.+.. .+|+..-|+|+|.+++.+++. |+|=|
T Consensus 31 DP~~~ak~~~~~Gad~ihivDld~a------~---~g~~~n~~~I~~i~~~~-~ipi~vGGGIrs~e~~~~~l~~GadkV 100 (252)
T PRK01659 31 DPVEIAAAYNEAGADELVFLDITAT------H---EGRKTMVDVVEKVAAKV-FIPLTVGGGISSVKDMKRLLRAGADKV 100 (252)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCC------C---CCCHHHHHHHHHHHHHC-CCCEEEECCEECHHHHHHHHHCCCCEE
T ss_conf 9999999999879999999946766------5---68864899999999756-974799633200688889874488559
Q ss_pred EEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 44122000124399999987199
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~~ 236 (322)
.||..++.||-++.++...|..+
T Consensus 101 iigs~a~~n~~~i~~~~~~~G~q 123 (252)
T PRK01659 101 SINSAAVLRPELITEGADHFGSQ 123 (252)
T ss_pred EECHHHHHCHHHHHHHHHHCCCE
T ss_conf 83177752915321467646863
No 119
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=97.10 E-value=0.0069 Score=41.09 Aligned_cols=131 Identities=15% Similarity=0.250 Sum_probs=77.7
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCC
Q ss_conf 82699899999887531045377744256413677666889999855899999999985027-90699986113456653
Q gi|254781167|r 54 IGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 54 l~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~ 132 (322)
=.|..|+.+.++..++ +.|+|.|=|- +..| +-..+.+.++.+++.. ++||-+ |
T Consensus 222 AVg~~~~~~eRa~~Lv-~AGvDvivID--------tAhG-------hs~~vi~~ik~ik~~~~~v~via----G------ 275 (486)
T PRK05567 222 AVGVGADNEERAEALV-KAGVDVLVVD--------TAHG-------HSEGVLDRVREIKAKYPDVQIIA----G------ 275 (486)
T ss_pred EECCCCCHHHHHHHHH-HCCCCEEEEE--------CCCC-------CHHHHHHHHHHHHHCCCCCCEEE----E------
T ss_conf 9626801899999999-7699889950--------4452-------15778999999974078773687----5------
Q ss_pred CCCHHHHHHHHCCCCCCHHHHH------HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Q ss_conf 2201455432000122012100------13566402577421227661046787666738--875302577778998988
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIH------ARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN--PDLFIGLNGGLEDMSQAL 204 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH------~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~--~~~~i~~NGdi~~~~~a~ 204 (322)
+..+.+-++.+.++|++.|-|- |-|+..-|.+ ...+..|.++.+.. ..+|||+-|+|.+.-|+.
T Consensus 276 Nv~T~~~a~~L~~aGaD~vkVGiG~GsiCtTr~v~GvG--------vPq~tAv~~~a~~a~~~~v~iIADGGi~~sGdi~ 347 (486)
T PRK05567 276 NVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVG--------VPQITAIADAAEAAKKTGIPVIADGGIRYSGDIA 347 (486)
T ss_pred EECHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH
T ss_conf 12019999999972987699656688665134324778--------6469999999999986597799648835435799
Q ss_pred HHH-HCCCCEEEECC
Q ss_conf 874-20352344122
Q gi|254781167|r 205 KIL-PSVDGVMIGRA 218 (322)
Q Consensus 205 ~~l-~~~dgvMigRg 218 (322)
+.+ -|+|.||+|.-
T Consensus 348 KAla~GAd~VMlGs~ 362 (486)
T PRK05567 348 KALAAGASAVMLGSM 362 (486)
T ss_pred HHHHCCCCEEEECCH
T ss_conf 998658988986612
No 120
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.10 E-value=0.003 Score=43.72 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=87.9
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 98269989999988753104537774425641367766688999985589999999998502790699986113456653
Q gi|254781167|r 53 QIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
-.+.+.++.-..-++...+.|.|+||+=+-. |+.+-.+.+.+.+.+++++++..-++.+|.=|-.....+
T Consensus 77 P~G~~~~~~k~~E~~~Ai~~GAdEIDmVin~----------~~~~~g~~~~v~~~i~~v~~a~~~~~~LKVIlET~~L~~ 146 (258)
T PRK05283 77 PHGNDDIAIALAETRAAIAYGADEVDVVFPY----------RALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKD 146 (258)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEH----------HHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 9999957789999999998799566544508----------988578879999999999998089843899974034785
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH----HHH-C-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 22014554320001220121001356640257742122766104678766----673-8-87530257777899898887
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEI----KKE-N-PDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l----~~~-~-~~~~i~~NGdi~~~~~a~~~ 206 (322)
.+.....++.+.++|+|.| ---| |.++ +.+-.+.++-+ ++. . +.+=|=+.|||+|.+||..+
T Consensus 147 ~e~I~~As~~a~~aGADFV--KTST----Gk~~------~gAT~e~v~~M~~aI~~~~~G~~vGvKasGGIrt~~dA~~y 214 (258)
T PRK05283 147 EALIRKASEIAIKAGADFI--KTST----GKVP------VNATLEAARIMLEVIRDMGVGKTVGFKPAGGVRTAEDAAQY 214 (258)
T ss_pred HHHHHHHHHHHHHHCCCEE--ECCC----CCCC------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 8999999999999697988--8899----9899------99799999999999998645886567625886899999999
Q ss_pred HHCCCCEEEECCCCCHHHH
Q ss_conf 4203523441220001243
Q gi|254781167|r 207 LPSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 207 l~~~dgvMigRga~~~P~i 225 (322)
+. +.+..+++-|+
T Consensus 215 l~------L~~~~lG~~w~ 227 (258)
T PRK05283 215 LA------LADEILGADWA 227 (258)
T ss_pred HH------HHHHHHCHHHC
T ss_conf 99------99997272104
No 121
>PRK13134 consensus
Probab=97.09 E-value=0.013 Score=39.17 Aligned_cols=174 Identities=18% Similarity=0.177 Sum_probs=96.6
Q ss_pred HHHCCCCCCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECC--CCCHH--HHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 8302745784-6999826998--9999988753104537774425--64136--7766688999985--58999999999
Q gi|254781167|r 40 ILGFSTQEKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNV--GCPSA--RVHEGSFGACLML--NPDIVGDCIAA 110 (322)
Q Consensus 40 ~~~~~~~e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~--GCP~~--~v~~~g~GaaLl~--~p~~~~~iv~~ 110 (322)
+.+...+.+| ++.=+.+++| +...+..+.+.+.|+|.|.|-+ ..|.. -|...-.--||-. +.+.+.++++.
T Consensus 10 f~~~k~~~~~ali~yitaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ 89 (257)
T PRK13134 10 IREAQAAGRPALIPFLTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTLRWIMDGLAA 89 (257)
T ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999859957998870707997999999999997799999978988887655899999999999679987899999998
Q ss_pred HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH
Q ss_conf 85027906999861134566532201455432000122012100-------------------------------13566
Q gi|254781167|r 111 MCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI 159 (322)
Q Consensus 111 ~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~ 159 (322)
.++..++|+-+= ++-+.--..-..+|++.+.++|++.+.|. .|-..
T Consensus 90 ~~~~~~~pivlM---tY~N~i~~yG~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~ 166 (257)
T PRK13134 90 RKGRLRAGLVLM---GYLNPFMQYGFERFVRDAADAGVAGCIIPDLPLDEDADLRALLAARGMDLIALVGPNTGEGRMRE 166 (257)
T ss_pred HHCCCCCCEEEE---ECCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf 744689998998---53459997468999999986798759946999778899999999759826996389999999999
Q ss_pred -------------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -------------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 -------------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 -------------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.+ ...+..--+++.++++.. ++|+..--||.+.+++..+..++|||-||-+
T Consensus 167 i~~~s~gFIY~vs~~GvTG~~-~~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 236 (257)
T PRK13134 167 YAAVASGYVYVVSVMGTTGVR-DGLPVEVADTLARARQCF-SIPVALGFGISRPAQLEGLSHPPDAVIFGSA 236 (257)
T ss_pred HHHHCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 996288808998435566876-455288999999999706-9987998067999999999703999998799
No 122
>PRK13139 consensus
Probab=97.08 E-value=0.014 Score=38.90 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=95.2
Q ss_pred CCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCE
Q ss_conf 578469998269989--99998875310453777442564136----776668899998--5589999999998502790
Q gi|254781167|r 46 QEKPLALQIGGADIS--KLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLM--LNPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~--~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl--~~p~~~~~iv~~~~~~~~~ 117 (322)
.+.-++.=+..++|+ ...++++.+.+.|+|.|.|-+=-.-| .|...-.--||- -+.+.+.++++.+++..++
T Consensus 14 ~~~~li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~~~~~~~ 93 (254)
T PRK13139 14 KDILLMTHIVLGYPSLQANREVIRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGGFKVRECFDFAREVVAAFNI 93 (254)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99248878558489979999999999966999999789888866658999999999997699799999999999724897
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-------
Q ss_conf 6999861134566532201455432000122012100-------------------------------13566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~------- 159 (322)
|+-+=+ +-+..-..-..+|++.+.++|++.+.|. .|-..
T Consensus 94 pivlM~---Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~g 170 (254)
T PRK13139 94 PFLFMT---YYNILFKYGVERFIDEVADIGVKGLIVPDLPPEQAQDYIAQCRAKGMAPIGIYAPTSTDERMGKIAAAADG 170 (254)
T ss_pred CEEEEE---EHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 689995---25999870999999999975998586479997889999999984697579994589998999999851698
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf ------402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
..|..+.+. ..+..--+++.++++. .++|+..--||.+.+++..+..++|||-||-+.
T Consensus 171 FiY~vs~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~aDGvIVGSai 234 (254)
T PRK13139 171 FIYCVARRGVTGSKT-SFDEHVGAFLHRCRAA-TPLPLAVGFGVKSAADVDYLKGKADIAVVGSQA 234 (254)
T ss_pred EEEEEECCCCCCCCC-CCHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 699996666679886-6458899999999855-899879973779999999997169999988899
No 123
>PRK13112 consensus
Probab=97.07 E-value=0.015 Score=38.63 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=95.8
Q ss_pred HCCCCCCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 02745784-6999826998--999998875310453777442564136----7766688999985--5899999999985
Q gi|254781167|r 42 GFSTQEKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMC 112 (322)
Q Consensus 42 ~~~~~e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~ 112 (322)
+...+.+| ++.=+.+++| +...++.+.+.+.|+|.|.|-+=-.-| .|.....--||-. +.+.+.++++.++
T Consensus 11 ~~k~~~r~ali~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir 90 (279)
T PRK13112 11 ELKAEGRPALVTYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFR 90 (279)
T ss_pred HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99976995589886073899789999999998779998997899898666579999999999976996889999999851
Q ss_pred CC-CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------HHHH----HH---
Q ss_conf 02-790699986113456653220145543200012201210-------------------------0135----66---
Q gi|254781167|r 113 KA-LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------HARK----AI--- 159 (322)
Q Consensus 113 ~~-~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------H~Rt----~~--- 159 (322)
+. .++|+-+ +|+-+.--..-..+|++.+.++|++.+.| =+-| ++
T Consensus 91 ~~~~~~Pivl---M~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i 167 (279)
T PRK13112 91 KDDDTTPIVL---MGYYNPIYIYGVERFLTDAKAAGVDGLIVVDLPPEMDAELCIPAMKAGINFIRLATPTTDDKRLPKV 167 (279)
T ss_pred CCCCCCCEEE---EEECHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 3489988799---8512499884799999999973998798469997888999999985783469982589989999999
Q ss_pred ------------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ------------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ------------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ------------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.+. .....--+++.++|+. .++|+..--||.+.+++.....++|||-||-+
T Consensus 168 ~~~s~GFiY~Vs~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~~~~~aDGvIVGSA 236 (279)
T PRK13112 168 LANTSGFVYYVSMTGITGSAL-ADTSAVGEAVARIKRH-TDLPVCVGFGVKTPEQARAIAAHADGVVVGTA 236 (279)
T ss_pred HHCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHH-CCCCCEEEECCCCHHHHHHHHCCCCEEEECHH
T ss_conf 852788089983566667664-5648899999999971-78987678356999999999725999998779
No 124
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.05 E-value=0.0014 Score=46.20 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 201455432000-122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 134 VALRNLVKSIKK-SGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 134 ~~~~~~~~~~~~-~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
+...+.++..++ .|+.+|.| .-+.| ... -.+.+-++|+++.+.+ ..||-.=|||+|.+++.+.++ |++
T Consensus 28 d~P~~~A~~~~~~~GA~~iHv----VDLDG---A~~--g~~~N~~~i~~I~~~~-~~~vQvGGGIRs~e~v~~ll~~Gv~ 97 (241)
T TIGR00007 28 DDPVEAAKKWEEFQGAKRIHV----VDLDG---ALE--GGPVNLEVIKKIVEEL-GVPVQVGGGIRSLEDVEKLLDLGVD 97 (241)
T ss_pred CCHHHHHHHHHHCCCCCEEEE----EECCH---HHC--CCCCHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCC
T ss_conf 898999999984169715999----84510---006--8620078999999861-8517981751688999999973985
Q ss_pred CEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 23441220001243999999871
Q gi|254781167|r 212 GVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 212 gvMigRga~~~P~if~~I~~~l~ 234 (322)
=|-||..|+.||-+|.++-+.|.
T Consensus 98 RVI~GT~A~~~~~~v~~~~~~~g 120 (241)
T TIGR00007 98 RVIIGTAAVENPDLVKELLKEYG 120 (241)
T ss_pred EEEEEEEEECCHHHHHHHHHHHC
T ss_conf 79973322108699999999848
No 125
>PRK13119 consensus
Probab=97.02 E-value=0.018 Score=38.01 Aligned_cols=169 Identities=19% Similarity=0.202 Sum_probs=94.7
Q ss_pred CCCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHC-CC
Q ss_conf 4578469998269989--999988753104537774425641367----76668899998--558999999999850-27
Q gi|254781167|r 45 TQEKPLALQIGGADIS--KLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLM--LNPDIVGDCIAAMCK-AL 115 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~--~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl--~~p~~~~~iv~~~~~-~~ 115 (322)
...+.++.=+.+++|+ ...+.++.+.+.|+|.|.|-+--.-|. +.....--||- -+++.+.++++.+++ ..
T Consensus 12 ~~~kali~yltaG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~ 91 (261)
T PRK13119 12 DGGKALIPYITVGDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDT 91 (261)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 48973898864838998999999999996699999978988886665899999999999779978899999998651489
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH-------------------------------HHHH-----
Q ss_conf 9069998611345665322014554320001220121001-------------------------------3566-----
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA-------------------------------RKAI----- 159 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~-------------------------------Rt~~----- 159 (322)
++|+-+=+ +-+.--..-..+|++.+.++|++.+.|.- |-..
T Consensus 92 ~~pivlMt---Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a 168 (261)
T PRK13119 92 QTPVVLMG---YLNPVHKMGYREFAQEAAKAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDRIKTIAELA 168 (261)
T ss_pred CCCEEEEE---CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98989984---037898862999999999759857983689978879999999975997644307999899999999728
Q ss_pred --------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf --------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 --------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 --------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.+.... .---+.+.++++. .++|+..--||.+.+++..+...+|||-||-+
T Consensus 169 ~gFiY~vs~~GvTG~~~~~~-~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 233 (261)
T PRK13119 169 GGFVYYVSLKGVTGAASLDT-DEVSRKIEYLHQY-IDIPIGVGFGISNAESARKIGRVADAVIVGSR 233 (261)
T ss_pred CCEEEEEECCCCCCCCCCCH-HHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHCCCCEEEECHH
T ss_conf 98199973666668775554-8899999999863-69987998365999999998734999998289
No 126
>PRK13140 consensus
Probab=97.02 E-value=0.016 Score=38.50 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=95.6
Q ss_pred CEEEEEECCCH--HHHHHHHHHHHCCCCCEEEEC--CCCCHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCEEEE
Q ss_conf 46999826998--999998875310453777442--564136--7766688999985--589999999998502790699
Q gi|254781167|r 49 PLALQIGGADI--SKLVEAAKIVEDFGYNEINLN--VGCPSA--RVHEGSFGACLML--NPDIVGDCIAAMCKALSIPVT 120 (322)
Q Consensus 49 p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN--~GCP~~--~v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~pvs 120 (322)
-++.=+.+++| +...+.++.+.+.|+|.|.|- +..|.. .|.....--||-. +.+.+.++++.+++..++|+-
T Consensus 15 ~li~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~piv 94 (257)
T PRK13140 15 ILSIYFTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKEVQIPLI 94 (257)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 16888818289879999999999975999999789889877658999999999998699899999999997436898889
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------H-------HH----------------HH-----------
Q ss_conf 9861134566532201455432000122012100-------1-------35----------------66-----------
Q gi|254781167|r 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------A-------RK----------------AI----------- 159 (322)
Q Consensus 121 vK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------~-------Rt----------------~~----------- 159 (322)
+ +|+-+.--..-..+|++.+.++|++.+.|. . |. ++
T Consensus 95 l---M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~~i~~I~lvaPtt~~~Ri~~i~~~a~gFi 171 (257)
T PRK13140 95 L---MGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDDYQEHYKEIFEKYGLKNIMLITPQTSEERIREIDSHTDGFI 171 (257)
T ss_pred E---EECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 9---9055999851799999999984998698359985675899999999869977998689998999999997399966
Q ss_pred ----HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf ----4025774212276610467876667388753025777789989888742035234412200
Q gi|254781167|r 160 ----LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAY 220 (322)
Q Consensus 160 ----~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~ 220 (322)
..|.++.++ ......-+++.++++...++|+..--||.+.+++......+|||-||-+..
T Consensus 172 Y~vs~~GvTG~~~-~~~~~~~~~i~~ik~~~~~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSaiv 235 (257)
T PRK13140 172 YMVSSASTTGAQQ-DFNNQKRAYFKRIKDMNLKNPRMVGFGISNKATFNAACEYASGAIIGSAFV 235 (257)
T ss_pred EECCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf 8703656668876-651568999999998278998699805798999999983199999879999
No 127
>PRK13127 consensus
Probab=97.01 E-value=0.013 Score=39.17 Aligned_cols=167 Identities=18% Similarity=0.232 Sum_probs=94.9
Q ss_pred CCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECC--CCCH--HHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCEEE
Q ss_conf 846999826998--9999988753104537774425--6413--67766688999985--58999999999850279069
Q gi|254781167|r 48 KPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNV--GCPS--ARVHEGSFGACLML--NPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 48 ~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~--GCP~--~~v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~pv 119 (322)
.-++.=|.+++| +...+.+..+.+.|+|.|.|-+ .-|. ..|.....--||-. +.+.+.++++++++..++|+
T Consensus 11 ~alI~yitaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pi 90 (262)
T PRK13127 11 GALVPYLVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPL 90 (262)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf 65898862708998999999999997699999978988887765799999999999769979999999999745699887
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHHH---------
Q ss_conf 9986113456653220145543200012201210-------------------------------013566---------
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKAI--------- 159 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~~--------- 159 (322)
-+= |+-+.--..-..+|++.+.++|++.+.| ..|-..
T Consensus 91 vlM---~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~a~gFi 167 (262)
T PRK13127 91 VLM---TYYNPVYRYGVEKFVKKAAEAGVSGLIIPDLPVEEATDLREACKKHGLDLVFLVAPTTPEERLKRIDEASSGFV 167 (262)
T ss_pred EEE---ECCHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 999---66138876089999999987599769966999789999999998558327998589998999999984389818
Q ss_pred ----HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf ----4025774212276610467876667388753025777789989888742-03523441220
Q gi|254781167|r 160 ----LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 160 ----~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
..|..+.+.. .+..--+.+.++++.. +.|+..--||.+.+++....+ ++|||-||-+.
T Consensus 168 Y~vs~~GvTG~~~~-~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSai 230 (262)
T PRK13127 168 YLVSRLGVTGARED-VEEATFDLLKRARTTC-KNKIAVGFGISKGEHAEELLDAGADGVIVGSAL 230 (262)
T ss_pred EEEECCCCCCCCCC-CHHHHHHHHHHHHHCC-CCCEEEEEEECCHHHHHHHHHCCCCEEEECHHH
T ss_conf 99843555687655-5288999999999617-998489933488999999986499999987899
No 128
>PRK13124 consensus
Probab=96.98 E-value=0.015 Score=38.57 Aligned_cols=165 Identities=17% Similarity=0.235 Sum_probs=86.8
Q ss_pred EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHH--HHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6999826998--9999988753104537774425641367----76668899998--55899999999985027906999
Q gi|254781167|r 50 LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLM--LNPDIVGDCIAAMCKALSIPVTV 121 (322)
Q Consensus 50 ~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl--~~p~~~~~iv~~~~~~~~~pvsv 121 (322)
++.=|.+++| +...+.++.+.+.|+|.|.|-+=-.-|. |.....--||- -+.+.+.++++.+++..++|+-+
T Consensus 11 li~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~pivl 90 (257)
T PRK13124 11 FIPFITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMELVGKMRKKVTIPIVY 90 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89886370899899999999999769999997898888776579999999999976996899999999852447888899
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH------------------------------HHHHH------------
Q ss_conf 861134566532201455432000122012100------------------------------13566------------
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH------------------------------ARKAI------------ 159 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH------------------------------~Rt~~------------ 159 (322)
= |+-+.--..-..+|++.+.++|++.+.|. -|-..
T Consensus 91 M---~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~~~~~~~~~gl~~I~lvaPTs~~Ri~~i~~~s~gFiY~v 167 (257)
T PRK13124 91 F---TYYNPVLQYGLEKFFALARENGIDGLLIPDLPLEESGELQEICDKYGIYLIPLVAPTSKERIKKIAEQAEGFVYCV 167 (257)
T ss_pred E---EHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEE
T ss_conf 7---5007898757999999999759984777899979999999999866873578847996799999985489838996
Q ss_pred -HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf -402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 -LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 -~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
..|..+.++ ..+.---+++.++++. .++|+..--||.+++++..+...+|||-||-+.
T Consensus 168 s~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~ADGvIVGSai 226 (257)
T PRK13124 168 SSLGVTGVRE-EIETDLEEFIRTVKQY-SNVPVAVGFGISTPEQVQKMKEIADGVVVGSAL 226 (257)
T ss_pred ECCCCCCCCC-CCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHHCCEEEECHHH
T ss_conf 2466678765-5608899999999861-799838984469999999998019999982899
No 129
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.98 E-value=0.024 Score=37.16 Aligned_cols=167 Identities=17% Similarity=0.299 Sum_probs=96.8
Q ss_pred CCCCEEEEEECCC--HHHHHHHHHHHHCCCCCEEEECCCCCH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHCC-C
Q ss_conf 5784699982699--899999887531045377744256413-----6776668899998--5589999999998502-7
Q gi|254781167|r 46 QEKPLALQIGGAD--ISKLVEAAKIVEDFGYNEINLNVGCPS-----ARVHEGSFGACLM--LNPDIVGDCIAAMCKA-L 115 (322)
Q Consensus 46 ~e~p~~~Ql~g~~--p~~~~~aa~~~~~~g~~~idlN~GCP~-----~~v~~~g~GaaLl--~~p~~~~~iv~~~~~~-~ 115 (322)
.+.-++.=+.+++ ++...+.++.+.+.|+|.|+|-+=-.- |.+.+.+ =-||- -.++.+.++++.+++. .
T Consensus 15 ~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~-~rAL~~g~t~~~~lel~~~~r~~~~ 93 (265)
T COG0159 15 NRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAH-LRALAAGVTLEDTLELVEEIRAKGV 93 (265)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 789748889488999899999999998679888996688888676688999989-9999779988999999999986189
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHH-HH----
Q ss_conf 90699986113456653220145543200012201210-------------------------------0135-66----
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARK-AI---- 159 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt-~~---- 159 (322)
++|+-+=+=. +..-..-...|++.+.++|++.+.| +-|- ++
T Consensus 94 ~~Pivlm~Y~---Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 94 KVPIVLMTYY---NPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred CCCEEEEEEC---CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 9988998701---1887735999999999759987985789866777899999976986798869999989999999747
Q ss_pred --------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf --------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 --------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 --------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|-.+.++..... --+.+.++++-. ++|+..--||.+.+++.+..+-+|||-+|.+
T Consensus 171 ~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSA 235 (265)
T COG0159 171 SGFIYYVSRMGVTGARNPVSAD-VKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEAADGVIVGSA 235 (265)
T ss_pred CCCEEEEECCCCCCCCCCCCHH-HHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 9858999666666777653046-999999999744-8973874486999999999976885797399
No 130
>PRK13115 consensus
Probab=96.98 E-value=0.023 Score=37.19 Aligned_cols=173 Identities=14% Similarity=0.171 Sum_probs=100.2
Q ss_pred HHHCCCCCCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 8302745784-6999826998--999998875310453777442564136----7766688999985--58999999999
Q gi|254781167|r 40 ILGFSTQEKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAA 110 (322)
Q Consensus 40 ~~~~~~~e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~ 110 (322)
+.+...+.++ ++.=+..++| +...++++.+.+.|+|.|.|-+=-.-| .|...-.--||-. +.+.+.++++.
T Consensus 15 F~~lk~~~k~alI~yitaG~P~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~f~~v~~ 94 (269)
T PRK13115 15 FDAARAEGRAALIGYLPAGFPDVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGPVIQAATEAALRGGVRVRDVFRAVEA 94 (269)
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999769944887852738998999999999996699999979998885666899999999999779959999999998
Q ss_pred HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHHH
Q ss_conf 8502790699986113456653220145543200012201210-------------------------------013566
Q gi|254781167|r 111 MCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKAI 159 (322)
Q Consensus 111 ~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~~ 159 (322)
+++ .++|+-+ +|+-+.--.--..+|++.+.++|++.+.| +.|-..
T Consensus 95 ~~~-~~~Pivl---M~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~LvaPtt~~eRi~~ 170 (269)
T PRK13115 95 ISA-AGGRALV---MTYWNPVLRYGVDRFARDLAAAGGAGLITPDLIPDEAGEWLAASERHGLDRIFLVAPSSTPERLAE 170 (269)
T ss_pred HCC-CCCCEEE---HHHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHH
T ss_conf 415-7998885---475489987369999999997399807647899789999999998658128998589998899999
Q ss_pred -------------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -------------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 -------------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 -------------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.++ .....--+++.++++. .++|+..--||.+.+++......+|||-||-+
T Consensus 171 i~~~a~GFIY~Vs~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~~~~~aDGvIVGSa 240 (269)
T PRK13115 171 TVEASRGFVYAASTMGVTGARD-AVSSAAPELVARVRAA-SDIPVCVGLGVSSAAQAAEIAGYADGVIVGSA 240 (269)
T ss_pred HHHCCCCCEEEEECCCCCCCCC-CCCHHHHHHHHHHHHH-CCCCCEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 9844888089975454567764-4417799999999971-79981797278999999999802999998689
No 131
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=96.97 E-value=0.0075 Score=40.83 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=61.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEE--E---------ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCE
Q ss_conf 6999826998999998875310453777--4---------425641367766688999985589999999998502-790
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEI--N---------LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA-LSI 117 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~i--d---------lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~-~~~ 117 (322)
+++-|.+.|..-+.+-++.+++.|.|.| | |-||=| +++++++. +++
T Consensus 2 iAPSILsADf~rLgee~~~v~~AGaD~iH~DVMDGHFVPNlT~Gp~----------------------v~~~~r~~g~~~ 59 (216)
T TIGR01163 2 IAPSILSADFARLGEEVKAVEEAGADLIHVDVMDGHFVPNLTFGPP----------------------VLEALRKYGTKL 59 (216)
T ss_pred CCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHH----------------------HHHHHHHHCCCC
T ss_conf 6512555047779999999996699789986247971771002778----------------------999887407952
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 699986113456653220145543200012201210013
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
|+-|=.=+ +.-.+|++...++|++.||+|.=
T Consensus 60 P~DVHLMv--------~~pd~~~~~Fa~aGA~~I~vH~E 90 (216)
T TIGR01163 60 PIDVHLMV--------ENPDRYIEDFAEAGADIITVHAE 90 (216)
T ss_pred CEEEEECC--------CCHHHHHHHHHHHCCCEEEEECC
T ss_conf 12663035--------78577788999708998998437
No 132
>PRK13117 consensus
Probab=96.97 E-value=0.024 Score=37.10 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=96.6
Q ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHCC-CC
Q ss_conf 57846999826998--999998875310453777442564136----7766688999985--589999999998502-79
Q gi|254781167|r 46 QEKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCKA-LS 116 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~~-~~ 116 (322)
.+..++.=+..++| +...+.+..+.+.|+|.|.|-+=-.-| .|.....--||-. +.+.+.++++++++. .+
T Consensus 15 ~~~ali~yitaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~ 94 (268)
T PRK13117 15 KEGAFVPFVTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKYPT 94 (268)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99148988727089979999999999966999899789988856557999999999984599699999999885004789
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHH-H-----
Q ss_conf 0699986113456653220145543200012201210-------------------------------01356-6-----
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKA-I----- 159 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~-~----- 159 (322)
+|+-+=+ |-+..-..-..+|++.+.++|++.+.| ..|-. +
T Consensus 95 ~pivlM~---Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~eE~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~ 171 (268)
T PRK13117 95 IPIGLLL---YANLVFANGIDNFYARCAEAGVDSVLIADVPVEESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGR 171 (268)
T ss_pred CCEEEEE---CCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 8779973---2628987179999999997698779857999788589999998679837998479999999999997479
Q ss_pred -------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf -------4025774212276610467876667388753025777789989888742-03523441220
Q gi|254781167|r 160 -------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 160 -------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
..|..+.+.. ....--+.+.++++. .++|+..--||.+.+++.+.+. ++|||-||-+.
T Consensus 172 GFiY~vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSai 237 (268)
T PRK13117 172 GYTYLLSRAGVTGAENK-AAAPLNHLVEKLKEY-NAPPPLQGFGISEPEQVKAAIKAGAAGAISGSAI 237 (268)
T ss_pred CEEEEEECCCCCCCCCC-CCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 85999836777889866-627799999999964-7998699837899999999986389989987899
No 133
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=96.96 E-value=0.02 Score=37.76 Aligned_cols=168 Identities=17% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHC-CCCE
Q ss_conf 7846999826998--999998875310453777442564136----7766688999985--58999999999850-2790
Q gi|254781167|r 47 EKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCK-ALSI 117 (322)
Q Consensus 47 e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~-~~~~ 117 (322)
...++.=+..++| +...++.+.+.+.|+|.|+|-+=-.-| .|...-.--||-+ +.+.+.++++.+++ ..++
T Consensus 8 ~~ali~yi~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~ 87 (258)
T pfam00290 8 EAAFVPFVTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSV 87 (258)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 96589887073899899999999999769999997899888766589999999999986996999999999855128998
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-------
Q ss_conf 6999861134566532201455432000122012100-------------------------------13566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~------- 159 (322)
|+-+=+ +-+.--..-...|++.+.++|++.+.|. .|-..
T Consensus 88 pivlM~---Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~g 164 (258)
T pfam00290 88 PIVLMT---YYNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEEADPLREAAEKHGIDLIFLVAPTTSDERLKTISEAASG 164 (258)
T ss_pred CEEEEE---ECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 889985---20889872999999999975997787079998899999999984584358884588819999999960898
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf ------402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
..|..+.+.. ..+---+++.++++. .++|+..--||.+.+++.....++|||-||-+.
T Consensus 165 FiY~vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSai 228 (258)
T pfam00290 165 FVYLVSRAGVTGARNA-FNAQLDELVERLKKY-TNVPVAVGFGISTPEHVKKIAAGADGVIVGSAI 228 (258)
T ss_pred EEEEEECCCCCCCCCC-CCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 0899853445676555-638899999999860-699848994579999999998159999984999
No 134
>PRK13116 consensus
Probab=96.92 E-value=0.048 Score=34.85 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=94.5
Q ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHCC-CC
Q ss_conf 57846999826998--999998875310453777442564136----7766688999985--589999999998502-79
Q gi|254781167|r 46 QEKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCKA-LS 116 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~~-~~ 116 (322)
.+.-++.=+.+++| +...+..+.+.+.|+|.|.|-+==.-| .|.....--||-. +.+.+.++++.+++. .+
T Consensus 15 ~~~alI~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~~~v~~ir~~~~~ 94 (278)
T PRK13116 15 GEGAFVPFIMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSALEQIKRVRAAYPE 94 (278)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99358988548489989999999999966999999799988856668999999999997698678999999984035898
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHH-H-----
Q ss_conf 0699986113456653220145543200012201210-------------------------------01356-6-----
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKA-I----- 159 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~-~----- 159 (322)
+|+-+=+ |-+..-..-...|++.+.++|++.+.| ..|-. +
T Consensus 95 ~PivlM~---Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~~i~~I~l~~ptt~~~ri~~I~~~s~ 171 (278)
T PRK13116 95 VPIGMLI---YGNVPFTRGLDRFYQEFAEAGADSILLPDVPVREGAPFSAAAAAAGIDPIYIAPANASEKTLEGVSAASK 171 (278)
T ss_pred CCEEEEE---CCCHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 7689980---5728877279999999977697589946999788899999998657666999379995999999997189
Q ss_pred -------HHCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHCCCCEEEECC
Q ss_conf -------4025774212276610-467876667388753025777789989888-7420352344122
Q gi|254781167|r 160 -------LKGLSPKDNRKIPNLD-YDIVYEIKKENPDLFIGLNGGLEDMSQALK-ILPSVDGVMIGRA 218 (322)
Q Consensus 160 -------~~g~s~~~~~~~~~~~-~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~-~l~~~dgvMigRg 218 (322)
..|..+.+ +...+-. -+.+.++++. .++|+..--||.+.+++.+ +..++|||-||-+
T Consensus 172 GFiY~VS~~GvTG~~-~~~~~~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGVIVGSA 237 (278)
T PRK13116 172 GYIYAISRDGVTGTE-RESSTDGLSAVVDNIKKF-DGAPILLGFGISSPQHVADAIAAGASGAITGSA 237 (278)
T ss_pred CEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 739998635222688-666678999999999845-799879981679899999998668999998779
No 135
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=96.88 E-value=0.025 Score=37.00 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=95.1
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.++.-..+.-|+..-+..++|+++.+.++...+.||..+-+-.|.+. +.-.+.+++++++++
T Consensus 66 ~LlGg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Kikvg~~~----------------~~d~~~v~~ir~~~g-- 127 (265)
T cd03315 66 LLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGRDP----------------ARDVAVVAALREAVG-- 127 (265)
T ss_pred HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCH----------------HHHHHHHHHHHHHCC--
T ss_conf 97299999769999779999999999999999759998999768985----------------999999999998729--
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99986113456653220145543200012201210013566402577421227661046787666738875302577778
Q gi|254781167|r 119 VTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE 198 (322)
Q Consensus 119 vsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~ 198 (322)
=.+++|+-.+..-+......+++.+++.++.++- ...++-|++..++|++.. .+||...-.+.
T Consensus 128 ~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~w~E----------------eP~~~~d~~~~~~L~~~~-~ipIa~gEs~~ 190 (265)
T cd03315 128 DDAELRVDANRGWTPKQAIRALRALEDLGLDYVE----------------QPLPADDLEGRAALARAT-DTPIMADESAF 190 (265)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE----------------CCCCCCCHHHHHHHHHCC-CCCEEECCCCC
T ss_conf 9967985787788999999999864005854884----------------789989999999998519-99999089879
Q ss_pred CHHHHHHHHH--CCCCEEEEC
Q ss_conf 9989888742--035234412
Q gi|254781167|r 199 DMSQALKILP--SVDGVMIGR 217 (322)
Q Consensus 199 ~~~~a~~~l~--~~dgvMigR 217 (322)
+..+....++ .+|.+.+-=
T Consensus 191 ~~~~~~~~i~~~~~d~v~~d~ 211 (265)
T cd03315 191 TPHDAFRELALGAADAVNIKT 211 (265)
T ss_pred CHHHHHHHHHHHCHHHEEECC
T ss_conf 999999999872613414087
No 136
>PRK13114 consensus
Probab=96.87 E-value=0.023 Score=37.19 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=96.5
Q ss_pred CCCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHCC-C
Q ss_conf 5784-6999826998--999998875310453777442564136----7766688999985--589999999998502-7
Q gi|254781167|r 46 QEKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCKA-L 115 (322)
Q Consensus 46 ~e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~~-~ 115 (322)
+.++ ++.=+.+++| +...+..+.+.+.|+|.|.|-+--.-| .|.....--||-. +.+.+.++++.+++. .
T Consensus 10 ~~k~~li~yitaG~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rAL~~G~~l~~~f~~v~~~r~~~~ 89 (266)
T PRK13114 10 KPRAALVAFITGGDPTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRSLAAGTTTADIFRIAAEFRQRHP 89 (266)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 79986898870718998999999999997699999979998886776899999999999869979999999999874189
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-----
Q ss_conf 906999861134566532201455432000122012100-------------------------------13566-----
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI----- 159 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~----- 159 (322)
++|+-+=+ +-+.--..-...|++.+.++|++.+.|. .|-..
T Consensus 90 ~~PivlM~---Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a 166 (266)
T PRK13114 90 EVPLVLMG---YANPMVRRGPDWFAAECKKAGVDGVICVDIPPEEDAELGPALRAAGIDPIRLATPTTDAARLPAVLEGA 166 (266)
T ss_pred CCCEEEEE---EHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 98879986---301999864999999999749977984589978889999999974997267756999799999999738
Q ss_pred --------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf --------4025774212276610467876667388753025777789989888742035234412200
Q gi|254781167|r 160 --------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAY 220 (322)
Q Consensus 160 --------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~ 220 (322)
..|..+.++-. ..---+.+.++|+. .++|+..--||.+.+++......+|||-||-+..
T Consensus 167 ~gFiY~vs~~GvTG~~~~~-~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSaiV 233 (266)
T PRK13114 167 SGFLYYVSVAGITGMQQAA-QASIEAAVARIKAA-TDLPVAVGFGVRTPEQAAAIARVADGVVVGSAFV 233 (266)
T ss_pred CCCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf 9958998445566776566-58899999999970-7998699836698999999980099999819999
No 137
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.83 E-value=0.026 Score=36.86 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCC
Q ss_conf 699899999887531045377744256413677666889999855899999999985027-9069998611345665322
Q gi|254781167|r 56 GADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~ 134 (322)
.+..+.-..-++.+.+.|+|+||+=+- .|+.+-.+.+.+.+-+++++++. +.++-|=+-.|. . +.+
T Consensus 70 ~~~~~~K~~E~~~ai~~GAdEiD~Vin----------~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~--L-t~~ 136 (221)
T PRK00507 70 ASTTAVKAFEAKDAIANGADEIDMVIN----------IGALKSGDWDAVEADIRAVVEAAGGKVLKVIIETCL--L-TDE 136 (221)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC----------HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC--C-CHH
T ss_conf 995768999999999859987774025----------999975848899999999998727673699974465--9-999
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 01455432000122012100135664025774212276610467876667388-753025777789989888742-0352
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
.....++.+.++|++.| ---| |.+ .+.+..+.|+.+++..+ .+-|=+.|||+|+++|.++++ |++-
T Consensus 137 ei~~a~~~~~~aGadfv--KTST----Gf~------~~gat~e~v~~m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~r 204 (221)
T PRK00507 137 EKVKACEICKEAGADFV--KTST----GFS------TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATR 204 (221)
T ss_pred HHHHHHHHHHHHCCCEE--EECC----CCC------CCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHH
T ss_conf 99999999998297878--6058----878------89989999999999728786386778989999999999827513
No 138
>PRK13138 consensus
Probab=96.83 E-value=0.019 Score=37.80 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=87.6
Q ss_pred CCC-EEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHC-CCC
Q ss_conf 784-6999826998--999998875310453777442564136----7766688999985--58999999999850-279
Q gi|254781167|r 47 EKP-LALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCK-ALS 116 (322)
Q Consensus 47 e~p-~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~-~~~ 116 (322)
.++ ++.=+.+++| +...+.++.+.+.|+|.|.|-+=-.-| .|..+..--||-+ +++.+.++++.+++ ..+
T Consensus 11 ~k~~lI~yitaG~P~~e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~ 90 (264)
T PRK13138 11 DKSVFIPYISLGDPDYDSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHKLHPE 90 (264)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99707888678799989999999999977999899799888866658999999999997799088974467760335898
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH---------------------------------HHHH----
Q ss_conf 069998611345665322014554320001220121001---------------------------------3566----
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA---------------------------------RKAI---- 159 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~---------------------------------Rt~~---- 159 (322)
+|+-+ +|+-+.--..-..+|++.+.++|++.+.|.- |-..
T Consensus 91 ~pivl---M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~~E~~~~~~~~~~~~i~~I~liaPtt~~~Ri~~i~~~ 167 (264)
T PRK13138 91 IPLVY---LTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLPFDTPEAEEFFSQLERKKIDFIHLVTPATTEDRIQSMKSF 167 (264)
T ss_pred CCEEE---EEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 88897---521238988489999999987697758536898650335999999998699867521799989999999973
Q ss_pred ---------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ---------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ---------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ---------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.++. ...---+.+.++++. .++|+..--||.+.+++..+..++|||-||-+
T Consensus 168 s~gFiY~Vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSa 233 (264)
T PRK13138 168 ASGFIYYVTSYGVTGERGA-IASGLEDRIQMVRKI-VGLPVCAGFGISTADQAKEISTYADGVIIGSA 233 (264)
T ss_pred CCCEEEEEECCCCCCCCCC-CCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHCCCEEEECHH
T ss_conf 8880898754566787655-537699999999974-38983886067989999999834999998199
No 139
>PRK13113 consensus
Probab=96.81 E-value=0.025 Score=37.01 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=93.8
Q ss_pred CCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHCC-CC
Q ss_conf 578469998269989--999988753104537774425641367----766688999985--589999999998502-79
Q gi|254781167|r 46 QEKPLALQIGGADIS--KLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLML--NPDIVGDCIAAMCKA-LS 116 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~--~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl~--~p~~~~~iv~~~~~~-~~ 116 (322)
.+..++.=+..++|+ ...+.++.+.+.|+|.|.|-+=-.-|. |.....--||-. +.+.+.++++++++. .+
T Consensus 15 ~~~ali~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~ 94 (263)
T PRK13113 15 GKKAFVAYVMAGDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDDT 94 (263)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99548988738289979999999999976999999789888877658999999999997798388999999975123899
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH------
Q ss_conf 06999861134566532201455432000122012100-------------------------------13566------
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI------ 159 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~------ 159 (322)
+|+-+ +|+-+.--.....+|++.+.++|++.+.|. .|-..
T Consensus 95 ~Pivl---M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~ 171 (263)
T PRK13113 95 TPIVM---MGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDLPPEEDSELCLPAQAAGLNFIRLATPTTDDRRLPKVLQNTS 171 (263)
T ss_pred CCEEE---EECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 88899---831368988569999999877794369717999788899999999779867999479999999999983389
Q ss_pred -------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 -------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 -------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.+..... ---+.+.++++. .++|+..--||.+.+++....+.+|||-||-+
T Consensus 172 gFiY~Vs~~GvTG~~~~~~~-~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~~~~~~~~ADGvIVGSa 235 (263)
T PRK13113 172 GFVYYVSITGITGAAAAQAA-DVAPEVARIKAA-TDLPVIVGFGITTPEAAQAIAGVADGCVVGSA 235 (263)
T ss_pred CCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 84899834556687755437-799999999854-79988998378998999999733999998689
No 140
>PRK13122 consensus
Probab=96.80 E-value=0.027 Score=36.70 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=81.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEC--CCCCHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 999826998999998875310453777442--564136--776668899998--55899999999985027906999861
Q gi|254781167|r 51 ALQIGGADISKLVEAAKIVEDFGYNEINLN--VGCPSA--RVHEGSFGACLM--LNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 51 ~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN--~GCP~~--~v~~~g~GaaLl--~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
+.=|. ++|+ +.+.++.+.+.|+|.|+|- +..|.. .|.....--||- -+.+.+.++++..++.++.|+-+
T Consensus 6 ipyi~-g~pd-~~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~l~~~r~~~~~pivl--- 80 (242)
T PRK13122 6 IPYIM-GNKD-LIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVL--- 80 (242)
T ss_pred EEEEC-CCCC-HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEE---
T ss_conf 77626-8999-999999999759999997898888666589999999999976998999999999731367987799---
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH-------------------------------HHHH-------------H
Q ss_conf 1345665322014554320001220121001-------------------------------3566-------------4
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHA-------------------------------RKAI-------------L 160 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~-------------------------------Rt~~-------------~ 160 (322)
+|+-+.--.--...|++.+.++|++.+.|.- |-.. .
T Consensus 81 M~Y~N~i~~~G~~~F~~~~~~~GvdGvIipDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~GFiY~vs~ 160 (242)
T PRK13122 81 MTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTM 160 (242)
T ss_pred EEECHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 98516988727999999998769986777899878899999999867986898718999899999999829996698733
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 0257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 161 KGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 161 ~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
.|..+.+.-.... --+.+.++++. .++|+..--||.+.+++..+.+.+|||-||-+
T Consensus 161 ~GvTG~~~~~~~~-~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~i~~~ADGvIVGSa 216 (242)
T PRK13122 161 NATTGQNGAFHPE-LKRKIESIKAI-ANVPVVAGFGIRTPQHVADIKEVADGIVIGSE 216 (242)
T ss_pred CCCCCCCCCCCHH-HHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 5435765556588-99999999972-59985871587999999999811999998489
No 141
>PRK13136 consensus
Probab=96.79 E-value=0.04 Score=35.47 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCE
Q ss_conf 57846999826998--999998875310453777442564136----7766688999985--589999999998502790
Q gi|254781167|r 46 QEKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~ 117 (322)
+.+.++.=|.+++| +...+.++.+.+.|+|.|.|-+--.-| .|.....--||-. +.+.+.++++.+++..++
T Consensus 10 ~~kalI~yitaG~P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~ 89 (253)
T PRK13136 10 KSPAYVAYLTAGDGGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQHSEI 89 (253)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 79985888648489989999999999965999899789988866657999999999998699799999999982257898
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-------
Q ss_conf 6999861134566532201455432000122012100-------------------------------13566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~------- 159 (322)
|+-+ +++-+. =...-.+|++.+.++|++.+.|. -|-..
T Consensus 90 pivl---M~Y~N~-i~~~G~~f~~~~~~~GvdGlIipDLP~eE~~~~~~~~~~~~i~~I~liaPtt~~eRi~~i~~~a~g 165 (253)
T PRK13136 90 PIIL---FTYFNP-LLAAGDKIYQQMKSAGVDGCLVVDLPVEEAAPHLTACKTAKIAPILLISPSTTQERLKKINEHGEG 165 (253)
T ss_pred CEEE---ECCCHH-HHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 8899---865179-999799999999974987200678997776999999997588712552689988999999960898
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.++. .+.---+.+.++|+. .++|+..--||.+.+++..+.+.+|||-||-+
T Consensus 166 FiY~vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~ADGvIVGSa 228 (253)
T PRK13136 166 MLYYVCRPGTTGVRAT-LPENFPAKMNQIKSM-TSLPIVTGFGIANRKMAAQALQYADGFVIGSL 228 (253)
T ss_pred EEEEEECCCCCCCCCC-CHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 1999855523687644-638899999999972-69986997154999999999822999998589
No 142
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.78 E-value=0.026 Score=36.83 Aligned_cols=43 Identities=30% Similarity=0.454 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 46787666738875302577778998988874203523441220
Q gi|254781167|r 176 YDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 176 ~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
-+.+.++|+. .++|+..--||.+.+++....+.+|||-||-+.
T Consensus 176 ~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~aDGvIVGSa~ 218 (242)
T cd04724 176 KELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKYADGVIVGSAL 218 (242)
T ss_pred HHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHCCEEEECHHH
T ss_conf 9999999871-689748743879999999999659999987899
No 143
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.77 E-value=0.063 Score=34.03 Aligned_cols=129 Identities=13% Similarity=0.258 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCC
Q ss_conf 699899999887531045377744256413677666889999855899999999985027-9069998611345665322
Q gi|254781167|r 56 GADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~ 134 (322)
|.+++.+.++..+++ .|+|.|=|-. .. .+...+.+.++.+++.. ++||-+ | +.
T Consensus 149 g~~~d~~era~~Lv~-AGvD~lvID~--------Ah-------Ghs~~~~e~ik~ik~~~p~v~VIa----G------NV 202 (404)
T PRK06843 149 SIDIDTIERVEELVK-AHVDILVIDS--------AH-------GHSTRIIELVKTIKNKYPNLDLIA----G------NI 202 (404)
T ss_pred CCCHHHHHHHHHHHH-CCCCEEEEEC--------CC-------CCHHHHHHHHHHHHHHCCCCCEEE----C------CC
T ss_conf 468528999999997-6999999968--------87-------521789999999997679961663----0------30
Q ss_pred CHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0145543200012201210------01356640257742122766104678766673--887530257777899898887
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKE--NPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~--~~~~~i~~NGdi~~~~~a~~~ 206 (322)
.+.+-+.-+.++|++.|-| -|-|+..-|. +-.....|.++.+. -..+|||+-|+|.+.-|+.+.
T Consensus 203 aT~~~a~~Li~aGAD~VkVGiGpGsiCTTr~v~Gv--------GvPq~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KA 274 (404)
T PRK06843 203 VTKEAALDLINVGADCLKVGIGPGSICTTRIVAGV--------GVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKA 274 (404)
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCC--------CCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 57999999998198999956547877256654586--------8748999999999960579978836874653279999
Q ss_pred HH-CCCCEEEECC
Q ss_conf 42-0352344122
Q gi|254781167|r 207 LP-SVDGVMIGRA 218 (322)
Q Consensus 207 l~-~~dgvMigRg 218 (322)
+. |+|.||+|.-
T Consensus 275 lA~GAdaVMlGs~ 287 (404)
T PRK06843 275 IAAGADSVMIGNL 287 (404)
T ss_pred HHCCCCEEEECCH
T ss_conf 9718988886713
No 144
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.77 E-value=0.017 Score=38.24 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=86.8
Q ss_pred CCCEEEEEECC----CHHHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCEE
Q ss_conf 78469998269----9899999887531045377744--25641367766688999985589999999998502--7906
Q gi|254781167|r 47 EKPLALQIGGA----DISKLVEAAKIVEDFGYNEINL--NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA--LSIP 118 (322)
Q Consensus 47 e~p~~~Ql~g~----~p~~~~~aa~~~~~~g~~~idl--N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~--~~~p 118 (322)
.-+++..+... ..+....-++.+.+.|+|+||+ |.|.. +-.+.+.+.+-+++++++ .++|
T Consensus 48 ~~~v~~vv~fp~g~~~~~~k~~e~~~ai~~GAdeid~v~~~~~~------------~~~~~~~~~~ei~~v~~~~~~g~~ 115 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSL------------KEGDWEEVLEEIAAVVEAADGGLP 115 (201)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHH------------HCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 98389995889999977799999999999099989974056777------------566889999999999997357983
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCC
Q ss_conf 999861134566532201455432000122012100135664025774212276610467876667388-7530257777
Q gi|254781167|r 119 VTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGL 197 (322)
Q Consensus 119 vsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi 197 (322)
+-|=+-.+. ..+.+.....++.+.++|++.|-. -| | + ..+.++-+.+..+++..+ .++|-..|||
T Consensus 116 ~kvi~e~~~--l~~~~~i~~a~~~~~~~GadfvKt--st----G---~---~~~~at~~~v~~m~~~~~~~~~vk~sGGi 181 (201)
T cd00945 116 LKVILETRG--LKTADEIAKAARIAAEAGADFIKT--ST----G---F---GGGGATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEECCCC--CCCHHHHHHHHHHHHHHCCCEEEE--CC----C---C---CCCCCCHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 799961677--899999999999999809987985--58----8---7---88989999999999982878638635897
Q ss_pred CCHHHHHHHHH-CCCCE
Q ss_conf 89989888742-03523
Q gi|254781167|r 198 EDMSQALKILP-SVDGV 213 (322)
Q Consensus 198 ~~~~~a~~~l~-~~dgv 213 (322)
.+.+++.+++. |++++
T Consensus 182 ~~~~~a~~~l~aGa~~i 198 (201)
T cd00945 182 KTLEDALAAIEAGADGI 198 (201)
T ss_pred CCHHHHHHHHHHCCCEE
T ss_conf 99999999998286535
No 145
>PRK13133 consensus
Probab=96.77 E-value=0.033 Score=36.13 Aligned_cols=170 Identities=12% Similarity=0.167 Sum_probs=89.2
Q ss_pred CCCCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHH----
Q ss_conf 457846999826998--999998875310453777442564136----7766688999985--5899999999985----
Q gi|254781167|r 45 TQEKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML--NPDIVGDCIAAMC---- 112 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~--~p~~~~~iv~~~~---- 112 (322)
...+-++.=+..++| +...++++.+.+.|+|.|.|-+==.-| .|.....--||-. +.+.+.++++.++
T Consensus 12 ~~~~ali~yitaG~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~ 91 (267)
T PRK13133 12 QDKKLLIAYYMPEFPVAGATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEG 91 (267)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 69970787856869998999999999997599989978998886666899999999999869989999999999973024
Q ss_pred -CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-
Q ss_conf -027906999861134566532201455432000122012100-------------------------------13566-
Q gi|254781167|r 113 -KALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI- 159 (322)
Q Consensus 113 -~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~- 159 (322)
+.+++|+-+= |+-+.--.--...|++.+.++|++.+.|. .|-..
T Consensus 92 ~~~~~~PivlM---tY~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~eRi~~i 168 (267)
T PRK13133 92 CRKITVPILLM---GYCNPLIAYGGDCFLADAVKAGVDGLLIPDLPPEEAIDFLERAKNFGLTVVFLISPVTPPERIEFI 168 (267)
T ss_pred CCCCCCCEEEH---HHHHHHHHHCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 34668778715---645799984779999999986987887789996888999999984698602442899999999999
Q ss_pred ------------HHCCCCCCC--C-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ------------402577421--2-2766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ------------LKGLSPKDN--R-KIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ------------~~g~s~~~~--~-~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+..+ . .....--+++.++++. .+.|+..--||.+.+++......+|||-||-+
T Consensus 169 ~~~s~GFiY~vs~~GvTG~~~~~~~~~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~~~~i~~~ADGvIVGSa 241 (267)
T PRK13133 169 DSLSTDFSYCLAVNATTGTAKLSDAGTEAAVDEYLKRVRQH-TKKKFVVGFGIKDRERVEHMWELADGAVVGTA 241 (267)
T ss_pred HHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 84278957999800134677555542678999999999971-89987996687999999999822999998789
No 146
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.76 E-value=0.064 Score=33.95 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=99.5
Q ss_pred CCHHHHHH-HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---EEEEEEEECCCCCCCC
Q ss_conf 99899999-8875310453777442564136776668899998558999999999850279---0699986113456653
Q gi|254781167|r 57 ADISKLVE-AAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS---IPVTVKCRIGVDDQIP 132 (322)
Q Consensus 57 ~~p~~~~~-aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~---~pvsvK~RlG~~~~~~ 132 (322)
+-|+...+ -++...+.|.|.+-+--+ |.|..-+..-+++++++-. .-|+-- .+.-.+
T Consensus 93 ~ypddvv~~fv~~~~~~GidifRiFDa---------------LNdv~Nm~~ai~~vk~~G~~~q~~i~yt----~sPvht 153 (499)
T PRK12330 93 HYEDEVVDRFVEKSAENGMDVFRVFDA---------------LNDLRNLETSIKAVKKTGKHAQGTICYT----VSPIHT 153 (499)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC---------------CCCHHHHHHHHHHHHHCCCEEEEEEEEE----CCCCCC
T ss_conf 588799999999999769988997244---------------4457778999999997188589999960----588778
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCC-HH--HHHH-HH
Q ss_conf 220145543200012201210013566402577421227661046787666738-8753025777789-98--9888-74
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLED-MS--QALK-IL 207 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~-~~--~a~~-~l 207 (322)
.+.+.++++.+++.|++.|+|- - ..|+- .|.+-++.|..+|+.+ |++||-.-.--++ .. ...+ ..
T Consensus 154 ~~yy~~~ak~l~~~G~d~i~IK---D-mAGll------~P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~Aie 223 (499)
T PRK12330 154 TEGFVEQAKRLLDMGCDSICIK---D-MAALL------KPQPAYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIE 223 (499)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE---C-CCCCC------CHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999999999997599989984---7-53467------889999999999986389983798517887469999999998
Q ss_pred HCCCCEEEECCCCC----HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 20352344122000----12439999998719988889998899999999999999999999852287679989989998
Q gi|254781167|r 208 PSVDGVMIGRAAYK----NSAMLTTVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGL 283 (322)
Q Consensus 208 ~~~dgvMigRga~~----~P~if~~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y 283 (322)
.|+|.|=.+=..++ .|-+-+ +-+.+.+....+ ....+....+..+...-...| ....+.-.+. .-.-|
T Consensus 224 AGvDivD~A~~~~s~gtsqp~~~s-~va~L~~t~~d~-~ld~~~l~~i~~y~~~vr~~Y-~~fe~~~~~~-----d~~v~ 295 (499)
T PRK12330 224 AGVDVVDTAISSMSLGPGHNPTES-LVEMLEGTGYTT-KLDMDRLLKIKDHFAKVRPRY-KEFLSKITGV-----ETEIF 295 (499)
T ss_pred CCCCEECCCCCCCCCCCCCCCHHH-HHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHH-HHCCCCCCCC-----CHHHH
T ss_conf 499887244543237988997999-999985789889-979999999999999999999-7504667678-----86350
Q ss_pred HCCCCCH--HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 7389998--999999986217811069999999
Q gi|254781167|r 284 FHGFPNS--RRCRHILTVEAGASTATHHIIETA 314 (322)
Q Consensus 284 ~kGlpga--k~~R~~Ls~~~~~~~~~~~iie~~ 314 (322)
.+.+||+ ..+++.+. +....+-..++++++
T Consensus 296 ~~q~PGGm~sNl~~Ql~-~~g~~dr~~eVl~e~ 327 (499)
T PRK12330 296 KSQIPGGMLSNMESQLK-QQGAGDRMKEVLEEV 327 (499)
T ss_pred CCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
T ss_conf 38895668999999999-778476799999999
No 147
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.75 E-value=0.048 Score=34.86 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
.-|...-+..++|+.+.+.++...+.||..+-+-+|.+ ++.-.+.++++++++ | .+++|+-
T Consensus 123 ~i~~~~~~~~~~~e~~~~~~~~~~~~G~~~~KiKvg~~----------------~~~d~~~v~~vr~~~--~-~~~l~vD 183 (316)
T cd03319 123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGD----------------LEDDIERIRAIREAA--P-DARLRVD 183 (316)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC----------------HHHHHHHHHHHHHHC--C-CCEEEEE
T ss_conf 74046506899999999999999975987686324899----------------799999999999668--9-9629984
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45665322014554320001220121001356640257742122766104678766673887530257777899898887
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~ 206 (322)
-+..-+.....++++.+++.++.++- ...++-||+..+++++.. .+||...=.+.+.+|..+.
T Consensus 184 aN~~~~~~~A~~~~~~l~~~~i~~iE----------------qP~~~~d~~~~~~l~~~~-~~pIa~dEs~~~~~d~~~~ 246 (316)
T cd03319 184 ANQGWTPEEAVELLRELAELGVELIE----------------QPVPAGDDDGLAYLRDKS-PLPIMADESCFSAADAARL 246 (316)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC----------------CCCCCCCHHHHHHHHHHC-CCCEEECCCCCCHHHHHHH
T ss_conf 68888999999999975244344430----------------898999999999999968-9999935887999999999
Q ss_pred HH--CCCCEEEEC
Q ss_conf 42--035234412
Q gi|254781167|r 207 LP--SVDGVMIGR 217 (322)
Q Consensus 207 l~--~~dgvMigR 217 (322)
++ .+|.|.+-=
T Consensus 247 ~~~~a~d~v~~k~ 259 (316)
T cd03319 247 AGGGAYDGINIKL 259 (316)
T ss_pred HHCCCCCEEEECC
T ss_conf 9769988698451
No 148
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.75 E-value=0.017 Score=38.23 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=77.1
Q ss_pred ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCC
Q ss_conf 26998999998875310453777442564136776668899998558999999999850-27906999861134566532
Q gi|254781167|r 55 GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCK-ALSIPVTVKCRIGVDDQIPA 133 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~-~~~~pvsvK~RlG~~~~~~~ 133 (322)
.|-.++.+.++..+++ .|+|.|=|-. ..| +-..+.+.++.+++ ..+++|-+ .+
T Consensus 222 VGv~~d~~eR~~aLv~-AGvDvlvIDt--------AHG-------hS~~vi~~vk~iK~~~p~~~via----------GN 275 (479)
T PRK07807 222 VGINGDVAAKARALLE-AGVDVLVIDT--------AHG-------HQEKMLEAIRAVRALDPGVPLVA----------GN 275 (479)
T ss_pred ECCCCCHHHHHHHHHH-CCCCEEEEEC--------CCC-------CHHHHHHHHHHHHHHCCCCCEEE----------EE
T ss_conf 2578458999999997-6998999754--------576-------64899999999984089885787----------43
Q ss_pred CCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH
Q ss_conf 20145543200012201210------013566402577421227661046787666738--8753025777789989888
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN--PDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~--~~~~i~~NGdi~~~~~a~~ 205 (322)
..+.+-++.+.++|+|.|-| -|-|++.-| +|...+..|+++.+.. ..+|||+-|+|...-|+.+
T Consensus 276 vaT~~~a~~Li~aGad~ikvGiG~GSiCtTr~v~g--------vG~pq~tAi~~~a~~a~~~gvpiIADGGIr~sGdi~K 347 (479)
T PRK07807 276 VVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTG--------VGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVAL 347 (479)
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCCC--------CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHH
T ss_conf 20299999999739997631555783243463237--------7886099999999998756997894587253467999
Q ss_pred HHH-CCCCEEEECC
Q ss_conf 742-0352344122
Q gi|254781167|r 206 ILP-SVDGVMIGRA 218 (322)
Q Consensus 206 ~l~-~~dgvMigRg 218 (322)
.+. |+|.||+|.-
T Consensus 348 Ala~GA~~VMlGsl 361 (479)
T PRK07807 348 ALAAGASNVMIGSW 361 (479)
T ss_pred HHHCCCCEEEECCC
T ss_conf 98728987888830
No 149
>PRK13123 consensus
Probab=96.73 E-value=0.022 Score=37.31 Aligned_cols=166 Identities=15% Similarity=0.206 Sum_probs=87.3
Q ss_pred CCCCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHCCCCE
Q ss_conf 57846999826998--9999988753104537774425641367----766688999985--589999999998502790
Q gi|254781167|r 46 QEKPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLML--NPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~ 117 (322)
.+.-++.=+.+++| +...++.+.+.+.|+|.|.|-+--.-|. |.....--||-. +.+.+.+.++..+ .++
T Consensus 13 ~~~ali~yitaG~P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~--~~~ 90 (256)
T PRK13123 13 GKGAFVPYIMAGDGGLDGLKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRALASGVSLKAILQALIEKE--TQI 90 (256)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CCC
T ss_conf 996488886186899789999999999769999997899888666579999989999867996999998876305--799
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHHH-------
Q ss_conf 699986113456653220145543200012201210-------------------------------013566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~~------- 159 (322)
|+-+ +|+-+.--.--..+|++.+.++|++.+.| ..|-..
T Consensus 91 Pivl---MtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~liaPtt~~~Ri~~i~~~a~G 167 (256)
T PRK13123 91 PLVI---MTYINPVFQYGIERFVEDLAETGVKGLIIPDLPYEHQDFIAPLLRDTDIALIPLVSLTSPIERQKEIIKEAEG 167 (256)
T ss_pred CEEE---EEHHHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8897---4042589871899999999974997897379996789999999997699778640899938899999860788
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ------40257742122766104678766673887530257777899898887420352344122
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.+.. ..+---+.+.++|+.. ++|+..--||.+.+++....+.+|||-||-+
T Consensus 168 FiY~Vs~~GvTG~~~~-~~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 230 (256)
T PRK13123 168 FIYAVAVNGVTGKRGN-YRDDLDSHLEKLKSIA-HIPVLAGFGISTLEDVERFNAVCDGVIVGSK 230 (256)
T ss_pred CEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHCCEEEEHHH
T ss_conf 4899744556676533-3388999999998568-9987997688999999999713999997299
No 150
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=96.67 E-value=0.0031 Score=43.70 Aligned_cols=92 Identities=24% Similarity=0.402 Sum_probs=72.4
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 201455432000122012100135664025774212276610467876667388753025777789989888742-0352
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
..-.++++.+++.|++.+.|=- +.+ . +.-.+.+++.+.++.+.. .+|+..-|+|.|.+++.+.++ |+|=
T Consensus 29 gdP~~~a~~~~~~g~d~i~ivD----Lda---~--~~~~~~n~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~~l~~Ga~k 98 (229)
T pfam00977 29 GDPVELAKRYEEEGADELHFVD----LDA---A--KEGRPVNLDLIEEIAEEV-FIPVQVGGGIRSLEDAERLLSAGADK 98 (229)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE----CCC---C--CCCCHHHHHHHHHHHHHC-CCCEEEECCEEEHHHHHHHHHCCCCE
T ss_conf 9999999999987999899996----866---3--026810699999999866-98789964561189999999769989
Q ss_pred EEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 34412200012439999998719
Q gi|254781167|r 213 VMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 213 vMigRga~~~P~if~~I~~~l~~ 235 (322)
|.||..++.||-++.++.+.+..
T Consensus 99 vvigs~~~~~~~~~~~~~~~~g~ 121 (229)
T pfam00977 99 VIIGTAAVKNPELIKEAAEKFGS 121 (229)
T ss_pred EEECCCHHHCHHHHHHHHHHCCC
T ss_conf 99586043093789999998098
No 151
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.076 Score=33.39 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=76.9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66532201455432000122012100135664025774212276610467876667388753025777789989888742
Q gi|254781167|r 129 DQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP 208 (322)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~ 208 (322)
+..+.-...++++...+.|+|.|+.--=|+. ++.| ...+++|.++.+.+ .+|+..-|+|.|.+|+.+.|.
T Consensus 25 ~lrd~GDpVelA~~Y~e~GADElvFlDItAs------~~gr---~~~~~vv~~~A~~v-fiPltVGGGI~s~eD~~~ll~ 94 (256)
T COG0107 25 NLRDAGDPVELAKRYNEEGADELVFLDITAS------SEGR---ETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLR 94 (256)
T ss_pred CHHHCCCHHHHHHHHHHCCCCEEEEEECCCC------CCCC---CCHHHHHHHHHHHC-EEEEEECCCCCCHHHHHHHHH
T ss_conf 2131489499999997759976999862256------5666---20799999997303-032475477588899999997
Q ss_pred -CCCCEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf -035234412200012439999998719
Q gi|254781167|r 209 -SVDGVMIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 209 -~~dgvMigRga~~~P~if~~I~~~l~~ 235 (322)
|+|-|-|..+|+.||-+.+++...|..
T Consensus 95 aGADKVSINsaAv~~p~lI~~~a~~FGs 122 (256)
T COG0107 95 AGADKVSINSAAVKDPELITEAADRFGS 122 (256)
T ss_pred CCCCEEEECHHHHCCHHHHHHHHHHHCC
T ss_conf 6997465284675095999999998388
No 152
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.56 E-value=0.011 Score=39.62 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEE
Q ss_conf 145543200012201210013566402577421227661046787666738875302577778998988874-2035234
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVM 214 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvM 214 (322)
..+.++.+.++|++.|.|-.-. |.+ . ---+.++.+|+.+|+++|+ -|+|-|.+.+..++ .|+|||-
T Consensus 154 ~~era~~Lv~AGvD~lvID~Ah----Ghs----~----~~~e~ik~ik~~~p~v~VI-aGNVaT~~~a~~Li~aGAD~Vk 220 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH----GHS----T----RIIELVKTIKNKYPNLDLI-AGNIVTKEAALDLINVGADCLK 220 (404)
T ss_pred HHHHHHHHHHCCCCEEEEECCC----CCH----H----HHHHHHHHHHHHCCCCCEE-ECCCCCHHHHHHHHHHCCCEEE
T ss_conf 8999999997699999996887----521----7----8999999999767996166-3030579999999981989999
Q ss_pred EECC
Q ss_conf 4122
Q gi|254781167|r 215 IGRA 218 (322)
Q Consensus 215 igRg 218 (322)
||-|
T Consensus 221 VGiG 224 (404)
T PRK06843 221 VGIG 224 (404)
T ss_pred ECCC
T ss_conf 5654
No 153
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.54 E-value=0.014 Score=38.90 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=87.0
Q ss_pred HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 98302745784699982699899999887531045377744256413677666889999855899999999985027906
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
.+++.-..+-++-+|+.|+-- .+.. ++.+-+.|++-|=|| ++.+++|.+. ++++.. ..-.+-
T Consensus 68 ~~I~~i~~~~~~pi~vGGGIr-s~~~-~~~~l~~Gadkvvig--------------s~~~~~~~~~-~~~~~~-g~~~iv 129 (233)
T cd04723 68 EAIRELAAAWPLGLWVDGGIR-SLEN-AQEWLKRGASRVIVG--------------TETLPSDDDE-DRLAAL-GEQRLV 129 (233)
T ss_pred HHHHHHHHHCCCCEEEECCCC-CHHH-HHHHHHCCCCEEECC--------------CHHCCCHHHH-HHHHHH-CCCCEE
T ss_conf 999999987899889970227-6999-999986072015245--------------1004998999-999997-899989
Q ss_pred EEEEEECCCCCC-CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999861134566-5322014554320001220121001356640257742122766104678766673887530257777
Q gi|254781167|r 119 VTVKCRIGVDDQ-IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL 197 (322)
Q Consensus 119 vsvK~RlG~~~~-~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi 197 (322)
+|+-.|-|.... .......++++.+.+. +..+.+.-=. ..| .-.| .|.+.+.++.+.. ++|+++.||+
T Consensus 130 vslD~k~~~~~~~~~~~~~~~~~~~~~~~-~~eii~t~Id--~dG------t~~G-~d~~l~~~i~~~~-~~pvi~sGGv 198 (233)
T cd04723 130 LSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDID--RVG------SGQG-PDLELLERLAARA-DIPVIAAGGV 198 (233)
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEEEC--CCC------CCCC-CCHHHHHHHHHHC-CCCEEEECCC
T ss_conf 99999899787246434899999999965-8959998643--446------5677-7999999999868-9989998899
Q ss_pred CCHHHHHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 89989888742-0352344122000124399
Q gi|254781167|r 198 EDMSQALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 198 ~~~~~a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
.+.+|.....+ |++||.+|++.+.+-.-+.
T Consensus 199 ~s~~di~~l~~~g~~gvivg~alh~g~i~l~ 229 (233)
T cd04723 199 RSVEDLELLKKLGASGALVASALHDGGLTLE 229 (233)
T ss_pred CCHHHHHHHHHCCCCEEEEEHHHHCCCCCHH
T ss_conf 9999999999789989998639778997889
No 154
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.52 E-value=0.013 Score=39.09 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=61.5
Q ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999985027906999861134566532201455432000122012100135664025774212276610467876667
Q gi|254781167|r 105 GDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKK 184 (322)
Q Consensus 105 ~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~ 184 (322)
.+.++.+++...+.+++-++ ....+.++.+.++|++.|+|--- .|.+ . .-.+.++.+++
T Consensus 73 ~~~v~~vk~~~~v~aaig~~---------~~~~~r~~~l~~ag~d~i~IDvA----hG~~-------~-~~~~~ik~ir~ 131 (325)
T cd00381 73 AEEVRKVKGRLLVGAAVGTR---------EDDKERAEALVEAGVDVIVIDSA----HGHS-------V-YVIEMIKFIKK 131 (325)
T ss_pred HHHHHHHHCCEEEEEEECCC---------HHHHHHHHHHHHCCCCEEEEECH----HCCC-------H-HHHHHHHHHHH
T ss_conf 99999750476999997668---------62899999999769989998700----0345-------8-89999999997
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 38875302577778998988874-20352344122
Q gi|254781167|r 185 ENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 185 ~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRg 218 (322)
.+|+++|+ -|+|-|.+-+...+ .|+|+|-||-|
T Consensus 132 ~~p~~~Ii-aGNV~T~e~a~~L~~~GaD~vkVGiG 165 (325)
T cd00381 132 KYPNVDVI-AGNVVTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HCCCCCEE-ECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 68997568-64566899999998669989997575
No 155
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.52 E-value=0.0045 Score=42.45 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCC
Q ss_conf 201455432000122012100135664025774212276610467876667388753025777789989888742-0352
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDG 212 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dg 212 (322)
..-.++++.+.+.|++.+.|= -+.+. . ..+.+++.+.++.+.. .+|+..-|+|+|.+++.+.++ |+|=
T Consensus 35 ~dP~~~a~~~~~~ga~~lhiv----DLda~---~---g~~~n~~~I~~i~~~~-~~pi~vGGGIrs~~~~~~~l~~Gadk 103 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIA----DLDAI---M---GRGDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASR 103 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEE----ECCCC---C---CCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 799999999998798989999----78654---6---9975399999999878-99889970227699999998607201
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 344122000124399999987
Q gi|254781167|r 213 VMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 213 vMigRga~~~P~if~~I~~~l 233 (322)
|.||..++.||.++..+..+.
T Consensus 104 vvigs~~~~~~~~~~~~~~~g 124 (233)
T cd04723 104 VIVGTETLPSDDDEDRLAALG 124 (233)
T ss_pred EECCCHHCCCHHHHHHHHHHC
T ss_conf 524510049989999999978
No 156
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.50 E-value=0.0066 Score=41.22 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=71.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
.-.++++.+.+.|++.+.|===.+.. ...+.+++.|.++.+.. .+|+..-|+|+|.+++.+.++ |+|-|
T Consensus 30 dP~~~a~~~~~~g~d~l~i~DLdaa~---------~~~~~n~~~I~~I~~~~-~~pi~vGGGIrs~~~~~~l~~~Ga~kv 99 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAK---------GGEPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCHH---------HCCCCHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCCEE
T ss_conf 99999999998699989999675303---------08911599999999767-956897377175999999986488718
Q ss_pred EEECCCCCHHHHHHHHHHHHCC
Q ss_conf 4412200012439999998719
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~~ 235 (322)
.+|..++.||-++.++.+.+..
T Consensus 100 vi~s~~~~~~~~~~~~~~~~G~ 121 (234)
T cd04732 100 IIGTAAVKNPELVKELLKEYGG 121 (234)
T ss_pred EECCCHHHCHHHHHHHHHHCCC
T ss_conf 9714011082789999998297
No 157
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.50 E-value=0.061 Score=34.11 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCC
Q ss_conf 998999998875310453777442564136776668899998558999999999850279-0699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~ 135 (322)
+.++.-...++.+.+.|+|+||+=+- .|..+-.+.+.+.+-+++++++.. .++-|=+-.|. . +.+.
T Consensus 66 ~~~~~K~~E~~~ai~~GAdEiD~Vin----------~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~--L-~~~e 132 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL--L-TDEE 132 (203)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC----------HHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC--C-CHHH
T ss_conf 86878999999999829987775123----------999960709999999999987628882699974465--9-9999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 1455432000122012100135664025774212276610467876667388-753025777789989888742-035
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
....++.+.++|++.| ---|. .+ .+.+..+.|+-+++... .+-|=+.|||+|+++|..+++ |++
T Consensus 133 i~~a~~~a~~aGadfv--KTSTG----~~------~~gat~e~v~~m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~ 198 (203)
T cd00959 133 IIKACEIAIEAGADFI--KTSTG----FG------PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred HHHHHHHHHHHCCCEE--EECCC----CC------CCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCH
T ss_conf 9999999998297889--71588----68------8998999999999983878607715897999999999981841
No 158
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=96.49 E-value=0.024 Score=37.15 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=71.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 699982699899999887531045377--744256413677666889999855899999999985027906999861134
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV 127 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~ 127 (322)
++.-|..+|...+.+..+.+++.|+|. +|+==|-=+|.. .+| -.+++++++.++.|+.|-+=+
T Consensus 3 IsPSil~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNi---tfg----------~~~v~~ir~~t~~p~DvHLMv-- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNI---TFG----------MKTIQAVAQYTRHPLSFHLMV-- 67 (210)
T ss_pred EEHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCC----------HHHHHHHHHCCCCCEEEEEEE--
T ss_conf 86556544899999999999977999899828889827745---629----------899999986189980799986--
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56653220145543200012201210013566402577421227661046787666738875302577778998988874
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l 207 (322)
. + -..+++.+.++|++.+|+|.-+. . .+ -+.+..+++.....-+..|=+ ++.+....++
T Consensus 68 --~-~---P~~~i~~~~~~g~d~it~H~Ea~--------~----~~--~~~i~~Ik~~g~k~GlAlnP~-T~i~~~~~~l 126 (210)
T PRK08005 68 --S-S---PQRWLPWLAAIRPGWIFIHAESV--------Q----NP--SEILADIRAIGAKAGLALNPA-TPLLPYRYLA 126 (210)
T ss_pred --C-C---HHHHHHHHHHCCCCEEEEECCCC--------C----CH--HHHHHHHHHCCCEEEEEECCC-CCHHHHHHHH
T ss_conf --8-8---89999999972998599935677--------6----99--999999997498078883799-9879987304
Q ss_pred HCCCCEEEE
Q ss_conf 203523441
Q gi|254781167|r 208 PSVDGVMIG 216 (322)
Q Consensus 208 ~~~dgvMig 216 (322)
+.+|.|++=
T Consensus 127 ~~vD~VLvM 135 (210)
T PRK08005 127 LQLDALMIM 135 (210)
T ss_pred HCCCEEEEE
T ss_conf 007989998
No 159
>PRK13137 consensus
Probab=96.42 E-value=0.059 Score=34.25 Aligned_cols=168 Identities=13% Similarity=0.185 Sum_probs=92.8
Q ss_pred CCCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHCCCC
Q ss_conf 4578469998269989--999988753104537774425641367----766688999985--58999999999850279
Q gi|254781167|r 45 TQEKPLALQIGGADIS--KLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLML--NPDIVGDCIAAMCKALS 116 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~--~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~ 116 (322)
..+..++.=|..++|+ ...+..+.+. .|.|.|.|-+==.-|. |.....--||-. +.+.+.++++.+++..+
T Consensus 22 ~~~~ali~yitaG~P~~~~s~~~~~~l~-~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~~~ 100 (266)
T PRK13137 22 EGRAAFIPFLTAGYPSAAGFLQVAEELL-AYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRALTD 100 (266)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 6995388786681888789999999997-389989978998885665799999999999779867789999997555689
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------HH-H---HH--------
Q ss_conf 06999861134566532201455432000122012100-------------------------13-5---66--------
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------AR-K---AI-------- 159 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------~R-t---~~-------- 159 (322)
+|+-+=+ +-+.--..-..+|++.+.++|++.+.|. +- | ++
T Consensus 101 ~PivlM~---Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtT~~eRi~~i~~~a~ 177 (266)
T PRK13137 101 TPLVIMT---YLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQDPEIADLAAEIGLAVTFLIAPTSTPERVKLVARACT 177 (266)
T ss_pred CCEEEEE---CHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 8789993---4589987589999999997696099947999788899999998759978999379999999999996088
Q ss_pred -------HHCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -------40257742122766104-678766673887530257777899898887420352344122
Q gi|254781167|r 160 -------LKGLSPKDNRKIPNLDY-DIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRA 218 (322)
Q Consensus 160 -------~~g~s~~~~~~~~~~~~-~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRg 218 (322)
..|..+.++ ....-+. +.+.++++. .++|+..--||.+.+++......+|||-||-+
T Consensus 178 GFiY~Vs~~GvTG~r~-~~~~~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~~~~~aDGvIVGSa 242 (266)
T PRK13137 178 GFLYAVSVTGVTGMRE-GLALGEVPDMLRLARQY-AALPVAVGFGVKDKATAAQVAQVADGVVVGSA 242 (266)
T ss_pred CCEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHCCEEEEHHH
T ss_conf 8289974467667776-67879999999999863-89987998266988999999831999998099
No 160
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=96.42 E-value=0.0034 Score=43.38 Aligned_cols=191 Identities=17% Similarity=0.289 Sum_probs=95.5
Q ss_pred HHCCCEEEECCCCCCHH--HHCCCHHHHHHCCCC--CCCEEEEEEC--CCHHHHH-------HHHHHHHCCCCCEEEECC
Q ss_conf 82898299817033247--760897898302745--7846999826--9989999-------988753104537774425
Q gi|254781167|r 15 LLTNNALLYTEMIVADA--ILRGDKKNILGFSTQ--EKPLALQIGG--ADISKLV-------EAAKIVEDFGYNEINLNV 81 (322)
Q Consensus 15 ~~~~~~~~~TEmi~a~~--l~~~~~~~~~~~~~~--e~p~~~Ql~g--~~p~~~~-------~aa~~~~~~g~~~idlN~ 81 (322)
+.|+|-|+|=.-.++.. |-+.--..+.+...+ .=|+-+ +| ++++++. +.|..+-..|+|=|-+|
T Consensus 53 ~eGADELVFLDITAS~ecPl~R~~m~~Vv~r~Ae~VfiPlTV--GGGI~~~eD~~GtkiPalevas~~L~aGADKvSiN- 129 (312)
T TIGR00735 53 EEGADELVFLDITASSECPLGRETMIDVVERTAEKVFIPLTV--GGGIKSIEDVKGTKIPALEVASKLLRAGADKVSIN- 129 (312)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE--CCCCCCHHHCCCCCCCHHHHHHHHHHCCCCEEEEC-
T ss_conf 628958985141136667888801167888875214522221--68888432045644427899999985489846328-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHCCCC---EEEE-----------------------------
Q ss_conf 64136776668899998558999999999---------850279---0699-----------------------------
Q gi|254781167|r 82 GCPSARVHEGSFGACLMLNPDIVGDCIAA---------MCKALS---IPVT----------------------------- 120 (322)
Q Consensus 82 GCP~~~v~~~g~GaaLl~~p~~~~~iv~~---------~~~~~~---~pvs----------------------------- 120 (322)
++-| ++|+++.+.-+. +.++.+ +-|+
T Consensus 130 ---TaAv----------~~P~li~e~a~~GdGtsPietiskaFGsQciVvaIDakr~~~~~~~~~k~~f~~e~~dGy~~y 196 (312)
T TIGR00735 130 ---TAAV----------KNPELISEAADRGDGTSPIETISKAFGSQCIVVAIDAKRVYVNSNPDEKNEFIVEVEDGYCWY 196 (312)
T ss_pred ---CHHH----------HCCHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEE
T ss_conf ---4675----------084478998732787551566653138517997552640544556333465078733896026
Q ss_pred -EEEECCCCCCC----CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -98611345665----3220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 121 -VKCRIGVDDQI----PAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 121 -vK~RlG~~~~~----~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
|-++=| .+. +.....++++..++.|+-.|-+ |-|.+ .+-++. -|...++.+++.+ ++|||++|
T Consensus 197 ~V~~~GG--R~~rtr~tg~da~~Wa~~v~~lGAGEILL---tsmD~--DG~k~G----YDl~L~~~v~e~v-~iPVIASG 264 (312)
T TIGR00735 197 EVYIYGG--RESRTRVTGLDAVEWAKEVEKLGAGEILL---TSMDR--DGTKSG----YDLELTKAVSEAV-KIPVIASG 264 (312)
T ss_pred EEEEECC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCC--CCCCCC----CCHHHHHHHHHHC-CCCEEEEC
T ss_conf 8998308--65554102067999999987458856653---03374--678787----7689999898416-65657507
Q ss_pred CCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7789989888742--0352344122000124399999987
Q gi|254781167|r 196 GLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 196 di~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~~l 233 (322)
|-=..|...+-+. ++|+.+.|-=-..+=.-..|+++||
T Consensus 265 GAG~~eHf~EAF~~gkADAaLaAS~FH~~e~~I~evK~YL 304 (312)
T TIGR00735 265 GAGKPEHFYEAFTKGKADAALAASIFHYREITIGEVKEYL 304 (312)
T ss_pred CCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8798530032221000345344355510455489999999
No 161
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=96.41 E-value=0.089 Score=32.92 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=72.9
Q ss_pred HHHHHHHHH--CCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCC------HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899999982--898299817033247760897898302745784699982699------899999887531045377744
Q gi|254781167|r 8 HYRFFARLL--TNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGAD------ISKLVEAAKIVEDFGYNEINL 79 (322)
Q Consensus 8 ~fR~l~r~~--~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~------p~~~~~aa~~~~~~g~~~idl 79 (322)
.||..++-+ ++.++.+-|..++-.=+...- ...+ ...+.|+++|+.-.+ -..+.+++..+.+.|+|.|-+
T Consensus 127 ~f~eQ~~~L~e~GvD~illET~~dl~E~~~Al-~aar-~~~~lPvi~s~t~~~~G~t~~G~~~~~a~~~l~~~gad~VG~ 204 (608)
T PRK08645 127 EFREQIDALLEEGVDGLLLETFYDLEELLEAL-KAAR-KKTDLPIIAQVAFHEDGVTQNGTSLEEALKQLVALGADVVGL 204 (608)
T ss_pred HHHHHHHHHHHCCCCEEEEEHHCCHHHHHHHH-HHHH-HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 99999999975799899986305999999999-9999-756997999999889980899997999999986289988988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--------CCCCCHHHHHHHHCCCCCCHH
Q ss_conf 256413677666889999855899999999985027906999861134566--------532201455432000122012
Q gi|254781167|r 80 NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQ--------IPAVALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 80 N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~--------~~~~~~~~~~~~~~~~g~~~i 151 (322)
||+.- |..+.+.++.+....+.|++|+=-.|+.+. .+.+.+.++++.+.+.|++.|
T Consensus 205 NC~~G----------------P~~m~~~l~~l~~~~~~pl~v~PNAGlP~~~~gr~~Y~~tPe~Fa~~a~~~~~~Ga~iI 268 (608)
T PRK08645 205 NCGLG----------------PYHMLEALKRIELPADAPLSAYPNAGLPEYVEGRYVYSANPEYFAEYAREFVEEGVRLI 268 (608)
T ss_pred CCCCC----------------HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 79789----------------99999999998742598189978899988789830278999999999999998599799
No 162
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.06 Score=34.17 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHH
Q ss_conf 10467876667388753025777789989888742-0352344122000124
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~ 224 (322)
-|++.++.+.+ ...++++-|.+.|++.|.+.++ |+++|-+|- |+-+|-
T Consensus 168 pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGs-AITRp~ 216 (229)
T COG3010 168 PDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGS-AITRPE 216 (229)
T ss_pred CCHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHCCEEEEECC-CCCCHH
T ss_conf 72899999986--79939951787999999999971880899874-337879
No 163
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.043 Score=35.25 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=84.0
Q ss_pred ECCCHHHH-HHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
Q ss_conf 26998999-99887531045377744--2564136776668899998558999999999850279069998611345665
Q gi|254781167|r 55 GGADISKL-VEAAKIVEDFGYNEINL--NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQI 131 (322)
Q Consensus 55 ~g~~p~~~-~~aa~~~~~~g~~~idl--N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~ 131 (322)
+|.+|-.. +.-++...+.|.|+||+ |.|. -+-.+.+.+.+-+++++++..-++-+|.=+-....
T Consensus 71 ~G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~------------~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L- 137 (228)
T COG0274 71 LGANTTAVKAAEAREAIENGADEIDMVINIGA------------LKSGNWEAVEREIRAVVEACADAVVLKVILETGLL- 137 (228)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHH------------HHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-
T ss_conf 99873888999999999849970256400899------------83698899999999999982877448999742556-
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHHH-C
Q ss_conf 3220145543200012201210013566402577421227661046787666738-8753025777789989888742-0
Q gi|254781167|r 132 PAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALKILP-S 209 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~~l~-~ 209 (322)
+.+.....++.+.++|++.| ---|. .+ .+.+-.+.+.-+++.+ +.+-|=+.|+|.+.+|+..|++ |
T Consensus 138 t~ee~~~A~~i~~~aGAdFV--KTSTG----f~------~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFV--KTSTG----FS------AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHHCCCEE--ECCCC----CC------CCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf 97999999999999589989--84778----78------98987999999999856571053268848899999999975
No 164
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.33 E-value=0.11 Score=32.25 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=99.2
Q ss_pred HHHHC-CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 98302-745784699982699899999887531045377744256413677666889999855899999999985027--
Q gi|254781167|r 39 NILGF-STQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-- 115 (322)
Q Consensus 39 ~~~~~-~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-- 115 (322)
++|.- ..+.-|+..-+.+.+|+++.+.++...+.||+.+-+..|-|...+- .| ++++...+.++++++++
T Consensus 103 ~LLGG~~r~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~K~k~~~~~~~~~---~~----~~~~~di~~v~~vR~~~G~ 175 (352)
T cd03325 103 QLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID---TS----KKVDAAVERVAALREAVGP 175 (352)
T ss_pred HHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CC----HHHHHHHHHHHHHHHHHCC
T ss_conf 9727766774268775688998999999999996799879986777434466---40----3199999999999998689
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 90699986113456653220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
++++.|-.=-+| +.....++++.+++.++.++- ...++-|++-.+++++.. .+||.+.=
T Consensus 176 ~~~l~vDan~~~----~~~~A~~~~~~l~~~~l~w~E----------------eP~~~~d~~~~~~l~~~~-~~PIa~gE 234 (352)
T cd03325 176 DIDIGVDFHGRV----SKPMAKDLAKELEPYRLLFIE----------------EPVLPENVEALAEIAART-TIPIATGE 234 (352)
T ss_pred CCCEEEECCCCC----CHHHHHHHHHHHHHCCCHHEE----------------CCCCCCCHHHHHHHHHHC-CCCEECCC
T ss_conf 981999889998----999999999986104623112----------------788988999999999876-99997178
Q ss_pred CCCCHHHHHHHHH--CCCCEEEE
Q ss_conf 7789989888742--03523441
Q gi|254781167|r 196 GLEDMSQALKILP--SVDGVMIG 216 (322)
Q Consensus 196 di~~~~~a~~~l~--~~dgvMig 216 (322)
.+.+..++.++++ .+|.+.+-
T Consensus 235 ~~~~~~~~~~~i~~~a~di~~~d 257 (352)
T cd03325 235 RLFSRWDFKELLEDGAVDIIQPD 257 (352)
T ss_pred CCCCHHHHHHHHHCCCCCEEECC
T ss_conf 37876778999976877668217
No 165
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.31 E-value=0.12 Score=31.98 Aligned_cols=148 Identities=16% Similarity=0.236 Sum_probs=84.1
Q ss_pred CCCEEEEEECCC-----H--HHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 784699982699-----8--99999887531045377--74425641367766688999985589999999998502790
Q gi|254781167|r 47 EKPLALQIGGAD-----I--SKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 47 e~p~~~Ql~g~~-----p--~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~ 117 (322)
+-|+++++-+++ + +.+...++-....|+|. +-+|.|.|.- . +..+.+.++.++..+ .++
T Consensus 73 ~~~lil~l~~~t~~~~~~~~~~~~~sVeeAvrlGAdaV~~~v~~Gs~~E--------~---~~l~~l~~l~~ea~~-~Gl 140 (266)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEDAIKLGADAVSVHVNVGSETE--------A---EMLEDLGRIARECEE-WGM 140 (266)
T ss_pred CCCEEEEECCCCCCCCCCCHHEEECCHHHHHHCCCCEEEEEEECCCCCH--------H---HHHHHHHHHHHHHHH-HCC
T ss_conf 8874999437731478864010121499998558778999854799837--------9---999999999999998-599
Q ss_pred EE--EEEEECC-CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69--9986113-45665322014554320001220121001356640257742122766104678766673887530257
Q gi|254781167|r 118 PV--TVKCRIG-VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 118 pv--svK~RlG-~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
|+ ++--|=+ ..++.+.+.+.-.++...+-|+|.|-+ .|.+ +-+...++.+..| +||+..
T Consensus 141 Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv---------------~y~g--d~e~f~~vv~~~~-vPVlia 202 (266)
T PRK07226 141 PLLAMMYPRGPKIKNEYDPEVVAHAARVGAELGADIIKT---------------NYTG--DPESFREVVEGCP-VPVVIA 202 (266)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---------------CCCC--CHHHHHHHHHHCC-CCEEEE
T ss_conf 569997346887777875999999999999967998983---------------5999--9899999998479-878995
Q ss_pred CCCC--CHHHHHHHH-----HCCCCEEEECCCCCHHH
Q ss_conf 7778--998988874-----20352344122000124
Q gi|254781167|r 195 GGLE--DMSQALKIL-----PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 195 Gdi~--~~~~a~~~l-----~~~dgvMigRga~~~P~ 224 (322)
||-. +.++.+++. .|+.|+.+||-++..|-
T Consensus 203 GG~k~~~~~~~L~~v~~ai~aGa~Gv~~GRNvfQ~~~ 239 (266)
T PRK07226 203 GGPKTGSDLEFLQMVEDAMEAGAAGVAIGRNIFQHED 239 (266)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCC
T ss_conf 7888898899999999999759946652610235798
No 166
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.30 E-value=0.013 Score=38.97 Aligned_cols=152 Identities=16% Similarity=0.287 Sum_probs=86.6
Q ss_pred HHHHCCCCCCCEEEEEECC--CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9830274578469998269--98999998875310453777442564136776668899998558999999999850279
Q gi|254781167|r 39 NILGFSTQEKPLALQIGGA--DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS 116 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g~--~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~ 116 (322)
.+++.--.+-.+-+|+.|+ +.+... + +-+.|++-|=+| ++.+ +|+.+.++.+... +
T Consensus 63 ~~I~~i~~~~~~piqvGGGIrs~e~i~---~-~l~~Ga~kViig--------------t~a~-~~~~l~~~~~~~~---~ 120 (228)
T PRK04128 63 DVVKNIIEETGLKVQVGGGFRTYESIK---D-AYEIGVENVIIG--------------TKAF-DIEFLEKITSEFN---G 120 (228)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHH---H-HHHCCCCEEEEC--------------CCCC-CHHHHHHHHHHCC---C
T ss_conf 999999865496289738607799999---9-996899769814--------------5125-8089999997264---7
Q ss_pred EEEEEEEEC------CCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 069998611------3456653220145543200012201210--01356640257742122766104678766673887
Q gi|254781167|r 117 IPVTVKCRI------GVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD 188 (322)
Q Consensus 117 ~pvsvK~Rl------G~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~ 188 (322)
+-||+-+|= ||.+. +.....++++.+. .++..+.+ ..|-..++ | .+ .+++..++
T Consensus 121 ivvslD~k~~~v~~~gw~~~-~~~~~~~~~~~~~-~~~~~ii~tdI~~dGt~~----------G---~~---~~~~~~~~ 182 (228)
T PRK04128 121 ITVSLDVKGGRIATKGWLEE-SSIKVEDAYKMLR-NYVNRFIYTSIERDGTLT----------G---IE---NIERFWGD 182 (228)
T ss_pred CCEEEECCCCEEECCCCEEC-CCCCHHHHHHHHH-HHCCCEEEEEECCCCCCC----------C---HH---HHHHHCCC
T ss_conf 63688713786852684888-9988999999998-638453763126543003----------8---89---99986168
Q ss_pred CCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 53025777789989888742-0352344122000124399999
Q gi|254781167|r 189 LFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 189 ~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~ 230 (322)
.|+++.|||.+.+|..+..+ |++|+.+|++.+.+-.=+.|+.
T Consensus 183 ~~iiasGGv~s~~Dl~~l~~~g~~gvivG~Al~~g~i~l~e~~ 225 (228)
T PRK04128 183 EEFIYAGGVSSIEDVKKLAEIGFSGAIIGKALYEGRISLEELL 225 (228)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHH
T ss_conf 9689878989999999999679989999853856997899994
No 167
>PRK08227 aldolase; Validated
Probab=96.25 E-value=0.063 Score=34.03 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCCEEEEEECCCH-------HHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 57846999826998-------99999887531045377--7442564136776668899998558999999999850279
Q gi|254781167|r 46 QEKPLALQIGGADI-------SKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS 116 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p-------~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~ 116 (322)
...++++.+.+++. +.+.-.++-....|+|. +.+|+|-+.- . +..+.+.++.++..+ .+
T Consensus 100 ~~~~lil~~s~~t~~~~~~~~k~lv~sVeeAvrlGAdAVsv~v~iGs~~E--------~---~~l~~lg~v~~e~~~-~G 167 (291)
T PRK08227 100 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNVCAVAAQVFIGSEYE--------T---QSIKNIIQLVDAGLR-YG 167 (291)
T ss_pred CCCEEEEEEECCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCCHH--------H---HHHHHHHHHHHHHHH-CC
T ss_conf 99407999806876667878875553499998679978999863599328--------9---999999999999998-29
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 06999861134566532201455432000122012100135664025774212276610467876667388753025777
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGG 196 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGd 196 (322)
+|+-.=+-.|-+...+...+.-.++...|-|+|.|-+. |.+ +...++....|.++++.-|.
T Consensus 168 mPlla~~~~g~~~~~d~~~va~aaRia~ELGADiVKt~---------------yt~----e~f~~Vv~a~pvPVliaGG~ 228 (291)
T PRK08227 168 MPTMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------------YVE----KGFERITAGCPVPIVIAGGK 228 (291)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECC---------------CCH----HHHHHHHHCCCCCEEEECCC
T ss_conf 98799834687777778999999999999789988506---------------973----45999996489978996799
Q ss_pred CCCHHHHHHHH-----HCCCCEEEECCCCCHHH
Q ss_conf 78998988874-----20352344122000124
Q gi|254781167|r 197 LEDMSQALKIL-----PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 197 i~~~~~a~~~l-----~~~dgvMigRga~~~P~ 224 (322)
=.+-.+++++. .|+.||.+||-++..|-
T Consensus 229 k~~d~e~L~~v~~a~~aGa~Gv~~GRNVfQ~~~ 261 (291)
T PRK08227 229 KLPERDALEMCYQAIDQGASGVDMGRNIFQSDA 261 (291)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCC
T ss_conf 898699999999999769936872400235899
No 168
>PRK13131 consensus
Probab=96.23 E-value=0.13 Score=31.70 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=86.2
Q ss_pred CCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHC-CCCE
Q ss_conf 578469998269989--99998875310453777442564136----7766688999985-58999999999850-2790
Q gi|254781167|r 46 QEKPLALQIGGADIS--KLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLML-NPDIVGDCIAAMCK-ALSI 117 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~--~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl~-~p~~~~~iv~~~~~-~~~~ 117 (322)
.+.-++.=+.+++|+ ...+.++.+.+.|+|.|.|-+--.-| .|.....-.||=. +.....++++++++ ..++
T Consensus 9 ~~~alI~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~~~~~~~~~~~r~~~~~~ 88 (257)
T PRK13131 9 EKMAFIPFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASMAKNFQLLKKIRDYNHHI 88 (257)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99458988618689988999999999977999999789988855455999999999997898899999999987049998
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH-------
Q ss_conf 6999861134566532201455432000122012100-------------------------------13566-------
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI------- 159 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~------- 159 (322)
|+-+ ++|-+.--.--..+|++.+.++|++.+.|. -|-..
T Consensus 89 pivl---M~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~s~G 165 (257)
T PRK13131 89 PIGL---LAYANLIFSYGVDGFYAQAKECGVDSVLIADMPLIEKELVIKSAQKHQIKQIFIASPNASVKDLEQVATHSQG 165 (257)
T ss_pred CEEE---ECCHHHHHHHCHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 8899---9276899985799999999865998565589996788999999997798479972899988999999835897
Q ss_pred ------HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf ------4025774212276610467876667388753025777789989888742-03523441220
Q gi|254781167|r 160 ------LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 160 ------~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
..|..+.++. ...---+.+.++|+. .++|+..--||.+.+++..... ++|||-||-+.
T Consensus 166 FiY~vs~~GvTG~~~~-~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~gaDGvIVGSai 230 (257)
T PRK13131 166 YIYTLARSGVTGASHT-LENDASAIIKTLKTF-SPTPALLGFGISKKEHITNAKGMGADGVICGSAL 230 (257)
T ss_pred EEEEEECCCCCCCCCC-CCHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 4999845767798643-407699999999966-8998799805798899999985599999987899
No 169
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.20 E-value=0.012 Score=39.29 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=64.9
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 55432000-122012100135664025774212276610467876667388753025777789989888742-0352344
Q gi|254781167|r 138 NLVKSIKK-SGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 138 ~~~~~~~~-~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
+.+....+ .|+++|.|= -+.| .. .-.+.+.+.|.++.+.. .+||..-|+|+|.+++.+.++ |+|=|.|
T Consensus 35 ~~~~~~~~~~Ga~~lHvV----DLdg---A~--~g~~~n~~~I~~i~~~~-~~~iqvGGGIRs~e~i~~~l~~G~~rVii 104 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIV----DLIG---AK--AQHAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYCIV 104 (234)
T ss_pred HHHHHHHHHCCCCEEEEE----ECCC---CC--CCCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999983899889999----7876---46--89743799999998437-98679846547599999999768999998
Q ss_pred ECCCCCHHHHHHHHHHHHCC
Q ss_conf 12200012439999998719
Q gi|254781167|r 216 GRAAYKNSAMLTTVDEYFSN 235 (322)
Q Consensus 216 gRga~~~P~if~~I~~~l~~ 235 (322)
|..|+.||-++.++.+.|..
T Consensus 105 gT~a~~~~~~l~~~~~~f~~ 124 (234)
T PRK13587 105 GTKGIQDTDWLKEMAHTFPG 124 (234)
T ss_pred CCCCCCCHHHHHHHHHHCCC
T ss_conf 88130286999999986667
No 170
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.19 E-value=0.14 Score=31.53 Aligned_cols=149 Identities=17% Similarity=0.278 Sum_probs=87.2
Q ss_pred CCCCEEEEEECCCH--------HHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 57846999826998--------99999887531045377--744256413677666889999855899999999985027
Q gi|254781167|r 46 QEKPLALQIGGADI--------SKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL 115 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p--------~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~ 115 (322)
.+-|++++|-+++. +.+...++-+..+|+|. +-+|.|.+.- ..+ ...+.++.++..+ .
T Consensus 54 ~~~~li~~ls~~t~~~~~~~~~~~l~~sVeeAvrlGAdaV~~~v~~Gs~~E--------~~~---l~~l~~v~~ea~~-~ 121 (235)
T cd00958 54 GDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEE--------REM---LEELARVAAEAHK-Y 121 (235)
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHCCHHHHHHCCCCEEEEEEECCCCHH--------HHH---HHHHHHHHHHHHH-H
T ss_conf 787669996467645788851776651699998355567999986898168--------999---9999999999998-3
Q ss_pred CEEEEEEEEC-C--CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9069998611-3--456653220145543200012201210013566402577421227661046787666738875302
Q gi|254781167|r 116 SIPVTVKCRI-G--VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIG 192 (322)
Q Consensus 116 ~~pvsvK~Rl-G--~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~ 192 (322)
++|+-+=+-. | ..++.+.+.+.-.++...+.|+|.|-+ .|.+ +-+..+++.+..+.+++
T Consensus 122 G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv---------------~y~g--~~e~f~~vv~~~~vPVv- 183 (235)
T cd00958 122 GLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT---------------KYTG--DAESFKEVVEGCPVPVV- 183 (235)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---------------CCCC--CHHHHHHHHHHCCCCEE-
T ss_conf 99789997416876556566899999999999978998982---------------3999--98999999970899899-
Q ss_pred CCCC--CCCHHHHHHHH-----HCCCCEEEECCCCCHHH
Q ss_conf 5777--78998988874-----20352344122000124
Q gi|254781167|r 193 LNGG--LEDMSQALKIL-----PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 193 ~NGd--i~~~~~a~~~l-----~~~dgvMigRga~~~P~ 224 (322)
.-|+ -.+.++.+++. .|+.||.+||-++..|-
T Consensus 184 iaGG~k~~~~~~~L~~v~~a~~aGa~Gv~~GRNvfQ~~~ 222 (235)
T cd00958 184 IAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCC
T ss_conf 808999999999999999999769956763641225888
No 171
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=96.19 E-value=0.011 Score=39.49 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=99.3
Q ss_pred CCEEEEEECCCHHHHHHHH-HHHHCCCCCEEEE--------------------CCCCCHHHH-HH-HHHHHHHHH-----
Q ss_conf 8469998269989999988-7531045377744--------------------256413677-66-688999985-----
Q gi|254781167|r 48 KPLALQIGGADISKLVEAA-KIVEDFGYNEINL--------------------NVGCPSARV-HE-GSFGACLML----- 99 (322)
Q Consensus 48 ~p~~~Ql~g~~p~~~~~aa-~~~~~~g~~~idl--------------------N~GCP~~~v-~~-~g~GaaLl~----- 99 (322)
.|-=.|++=+.-+..-+-. .-+...|+..|=| =+|-|.=.- .. .+.|-.|=.
T Consensus 133 ~P~WFQ~Y~~KDD~~NR~I~D~~Ka~G~~AIvLTADaTV~GNR~~D~~N~FVfP~GMPIV~~YL~G~~~G~s~~~vY~~a 212 (368)
T TIGR02708 133 TPHWFQFYMSKDDGINRDILDRVKADGAKAIVLTADATVGGNREVDKRNGFVFPVGMPIVQEYLPGEGAGKSLDYVYKSA 212 (368)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 97158888740343334678887527852899721463357744135587361155603331078876774066666554
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 589999999998502790699986113456653220145543200012201210--013566402577421227661046
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKIPNLDYD 177 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~~~~~ 177 (322)
.-.+.-+=|+.+...+++||-|| |.- ..|=+.+..++|++.|.| ||- .|.|-+|+.+|
T Consensus 213 KQ~lsprDiE~IA~ySGLPVyVK---G~Q-------~~ED~~~al~AGASGIWV~NHG~----------RQl~~~PaaFD 272 (368)
T TIGR02708 213 KQKLSPRDIEEIAAYSGLPVYVK---GPQ-------CPEDADRALKAGASGIWVTNHGG----------RQLDGGPAAFD 272 (368)
T ss_pred HCCCCCCHHHHHHHHCCCCEEEE---CCC-------CHHHHHHHHHCCCCEEEEECCCC----------CCCCCCCCCCH
T ss_conf 11578100899972179836860---788-------86689999972886257604775----------02367875200
Q ss_pred HHHHHHHHCC-CCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHH
Q ss_conf 7876667388-75302577778998988874-20352344122000124399
Q gi|254781167|r 178 IVYEIKKENP-DLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 178 ~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~ 227 (322)
...++.+++. .+||+.--||+--+...+.| +|+|=|-+|| |-||.
T Consensus 273 ~L~~vAE~V~~rVPIVFDSGvRRG~Hv~KALASGAD~VAlGR-----Pv~yG 319 (368)
T TIGR02708 273 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGR-----PVIYG 319 (368)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEECCC-----HHHHH
T ss_conf 069999985285566850884325789998723564430132-----35666
No 172
>PRK13132 consensus
Probab=96.18 E-value=0.081 Score=33.21 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHHH----HHHHHHHHHHHH--HHHHHHHHHHHHHCCCCEEE
Q ss_conf 846999826998--9999988753104537774425641367----766688999985--58999999999850279069
Q gi|254781167|r 48 KPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSAR----VHEGSFGACLML--NPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 48 ~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~~----v~~~g~GaaLl~--~p~~~~~iv~~~~~~~~~pv 119 (322)
+.++.=|..++| +...++++.+.+.|+|.|.|-+-=.-|. |.....--||-. +.+.+.++++.++. +.|+
T Consensus 11 ka~I~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~ir~--~~pi 88 (246)
T PRK13132 11 KANIGYIVAGYPNLETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARVKT--KKAL 88 (246)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCCE
T ss_conf 87247882858998999999999997499989978988887655899999999998779989999999997536--9997
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH------------------------------HHHH----------
Q ss_conf 998611345665322014554320001220121001------------------------------3566----------
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA------------------------------RKAI---------- 159 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~------------------------------Rt~~---------- 159 (322)
-+ +|+-+..-..-..+|++.+.++|++.+.|.- |...
T Consensus 89 vl---M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~~~~~~~~~~~i~~I~lvaPTs~~R~~~i~~~s~gfiY 165 (246)
T PRK13132 89 VF---LVYYNLIFAYGLEKFVKKAKELGISGLIVPDLPFEESEELIKECEKYNIALIPLISVTSPKRAKKILKHAKGFIY 165 (246)
T ss_pred EE---EEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEE
T ss_conf 99---960108877299999999987699857757999789899999999859970144257978999999954898279
Q ss_pred ---HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf ---4025774212276610467876667388753025777789989888742035234412200
Q gi|254781167|r 160 ---LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAY 220 (322)
Q Consensus 160 ---~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~ 220 (322)
..|..+.+..... ---+.+.++++. .+.|+..--||.+.+++..+.+.+|||-||-+..
T Consensus 166 ~vs~~GvTG~~~~~~~-~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~aDGvIVGSa~v 227 (246)
T PRK13132 166 ALGSIGVTGTKSVEEA-RLKDKVKEIKSF-TDLPVAVGFGIKNNQDVKRMRKYADGVIVGTSIV 227 (246)
T ss_pred EEECCCCCCCCCCCHH-HHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCEEEECHHHH
T ss_conf 9753567777666368-899999999962-8998699779899999999982299999709999
No 173
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.17 E-value=0.016 Score=38.49 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=61.7
Q ss_pred CCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 27906999861134566532201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 114 ALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 114 ~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
+.+.|.+-.+-. ..+.....+++++++++|+.+|.++-=+.+. + +| ..|+.+..+++.. ..|++.
T Consensus 113 ~~~~~~wfQLY~----~~d~~~~~~li~rA~~aG~~al~lTvD~p~~---g---~R----~~w~~i~~l~~~~-~~p~i~ 177 (299)
T cd02809 113 AAPGPRWFQLYV----PRDREITEDLLRRAEAAGYKALVLTVDTPVL---G---RR----LTWDDLAWLRSQW-KGPLIL 177 (299)
T ss_pred HCCCCEEEEEEC----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCC---C---CC----CCHHHHHHHHHHC-CCCEEE
T ss_conf 448984677643----6999999999999998599989997058987---8---87----9999999999866-998799
Q ss_pred CCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 777789989888742-035234412
Q gi|254781167|r 194 NGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 194 NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
- +|.+++||....+ |+|||.|.-
T Consensus 178 K-Gi~~~~DA~~a~~~G~dgI~VSN 201 (299)
T cd02809 178 K-GILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred E-CCCCHHHHHHHHHCCCCEEEECC
T ss_conf 7-27889999999985998899728
No 174
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=96.16 E-value=0.062 Score=34.06 Aligned_cols=148 Identities=14% Similarity=0.211 Sum_probs=91.8
Q ss_pred EEECCCHHHHHHHHHHHH-C-CCCC-EEEECCCCCHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 982699899999887531-0-4537-774425641367766688999--98----5589999999998502790699986
Q gi|254781167|r 53 QIGGADISKLVEAAKIVE-D-FGYN-EINLNVGCPSARVHEGSFGAC--LM----LNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~-~-~g~~-~idlN~GCP~~~v~~~g~Gaa--Ll----~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
+.|+++++.+.++.+.+. + +.=| .|| |-.-....-+||. || -+++.+.+++....+ .+..+-|-+
T Consensus 92 ~~F~Gs~~~L~~vr~~v~lPiLrKDFIid-----~yQI~ear~~GADaiLLI~~~L~~~~l~~l~~~a~~-lgl~~LvEv 165 (254)
T pfam00218 92 KYFQGSLEYLREVREAVSLPVLRKDFIID-----EYQIYEARAYGADTVLLIVAVLSDELLEELYEYARS-LGMEPLVEV 165 (254)
T ss_pred CCCCCCHHHHHHHHHHCCCCEECCHHEEE-----HHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHHH-HCCEEEEEE
T ss_conf 86798799999999864885111410465-----999999998088863144711999999999999998-488679886
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHH
Q ss_conf 1134566532201455432000122012100135664025774212276610467876667388-753025777789989
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQ 202 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~ 202 (322)
. +.. |+ ..+.++|++.|-|-.|. ..+...|.+...++....| +..++.-+||.+.+|
T Consensus 166 h-------~~~---El-~~al~~~a~iIGINNRn-----------L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d 223 (254)
T pfam00218 166 H-------NEE---EL-ERALALGAKLIGVNNRN-----------LKTFEVDLNTTRRLAPMVPEDVLLVAESGISTPED 223 (254)
T ss_pred C-------CHH---HH-HHHHHCCCCEEEECCCC-----------HHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 8-------999---99-99984899789632788-----------46510057999999955898987998389999999
Q ss_pred HHHHHH-CCCCEEEECCCCCHHHHHHH
Q ss_conf 888742-03523441220001243999
Q gi|254781167|r 203 ALKILP-SVDGVMIGRAAYKNSAMLTT 228 (322)
Q Consensus 203 a~~~l~-~~dgvMigRga~~~P~if~~ 228 (322)
+..+.. |+|||+||.+.+..|-.-..
T Consensus 224 i~~l~~~G~~~~LIGe~lm~~~dp~~~ 250 (254)
T pfam00218 224 VEKLAKHGANAFLVGESLMRAPDVRAA 250 (254)
T ss_pred HHHHHHCCCCEEEECHHHHCCCCHHHH
T ss_conf 999998799999989687579998999
No 175
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=96.11 E-value=0.088 Score=32.95 Aligned_cols=109 Identities=26% Similarity=0.289 Sum_probs=67.8
Q ss_pred CCHHHHHHH-HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEECCCC--CCCC
Q ss_conf 998999998-8753104537774425641367766688999985589999999998502790-69998611345--6653
Q gi|254781167|r 57 ADISKLVEA-AKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSI-PVTVKCRIGVD--DQIP 132 (322)
Q Consensus 57 ~~p~~~~~a-a~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~-pvsvK~RlG~~--~~~~ 132 (322)
+=|++.+++ ++.+.++|.|.+=|= -=|.||-=+.+-++++++. +. =| +.=|-+. --++
T Consensus 87 HYADDVVe~FV~~a~~NG~DVFRiF---------------DALND~RNl~~ai~a~Kk~-g~dHv--Qg~iSYTtSPvHT 148 (616)
T TIGR01108 87 HYADDVVEAFVKKAVENGLDVFRIF---------------DALNDPRNLQKAIEAAKKH-GADHV--QGAISYTTSPVHT 148 (616)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEE---------------CCCCCHHHHHHHHHHHHHH-CCCEE--EEEEECCCCCHHH
T ss_conf 5843689999999997598089951---------------2458877899999999973-89789--9997124684367
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
.+.++|+++.+.+.|||-|+| +-+-+=|||+ +-||.|.+||+.++++||-.
T Consensus 149 l~~yl~la~~L~~~G~DSI~I---KDMaGlLTP~-------~AYELV~alK~~~~n~pvhL 199 (616)
T TIGR01108 149 LEKYLELAKELLEMGVDSICI---KDMAGLLTPK-------VAYELVSALKKEFGNLPVHL 199 (616)
T ss_pred HHHHHHHHHHHHHHCCCEEEE---ECCCCCCCHH-------HHHHHHHHHHHHCCCEEEEE
T ss_conf 888999999999818860552---0200464415-------89999999974239746886
No 176
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.04 E-value=0.043 Score=35.21 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=64.0
Q ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHH
Q ss_conf 999998502790699986113456653220145543200012201210013566402577421227-6610467876667
Q gi|254781167|r 106 DCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKI-PNLDYDIVYEIKK 184 (322)
Q Consensus 106 ~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~-~~~~~~~i~~l~~ 184 (322)
+.+..+.. .++.|.+++ .....++..++.|++.+..+|=.+ .|..+. +. .+.-...+.++.+
T Consensus 118 ~~i~~~~~-~g~~v~~~v-----------~~~~~A~~~~~~G~d~vI~~g~eA--GGH~g~---~~~~~~t~~Lv~ev~~ 180 (336)
T COG2070 118 EFVARLKA-AGIKVIHSV-----------ITVREALKAERAGADAVIAQGAEA--GGHRGG---VDLEVSTFALVPEVVD 180 (336)
T ss_pred HHHHHHHH-CCCEEEEEE-----------CCHHHHHHHHHCCCCEEEECCCCC--CCCCCC---CCCCCCHHHHHHHHHH
T ss_conf 89999997-498589850-----------889999999817998899437767--786899---8877318889999999
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf 388753025777789989888742-03523441220
Q gi|254781167|r 185 ENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 185 ~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
.+..+|+++-|+|.|.+++...+. |+|||-+|..-
T Consensus 181 ~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~F 216 (336)
T COG2070 181 AVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRF 216 (336)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 854897898768688699999998441685541254
No 177
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.04 E-value=0.024 Score=37.05 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=71.6
Q ss_pred HHHHHHHCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 98875310453777--4425641367766688999985589999999998502790699986113456653220145543
Q gi|254781167|r 64 EAAKIVEDFGYNEI--NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVK 141 (322)
Q Consensus 64 ~aa~~~~~~g~~~i--dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~ 141 (322)
+-++.+.+.|.|.| |.-=|+- ..+.+.++.+++..+ -.+-+-.| +..+.+-++
T Consensus 245 eRa~~Lv~aGvD~lviD~AhGhs-----------------~~v~~~ik~ik~~~~--~~~~i~aG------NVaT~~~~~ 299 (497)
T PRK07107 245 ERVPALVEAGADVLCIDSSDGYS-----------------EWQKRTLDYIKEKYG--DTVKVGAG------NVVDRDGFL 299 (497)
T ss_pred HHHHHHHHCCCCEEEECCCCCCH-----------------HHHHHHHHHHHHHCC--CCCCCCCC------CHHCHHHHH
T ss_conf 99999998599999803435352-----------------999999999998669--87634145------212699999
Q ss_pred HHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH--------CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 200012201210------01356640257742122766104678766673--------8875302577778998988874
Q gi|254781167|r 142 SIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKE--------NPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 142 ~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~--------~~~~~i~~NGdi~~~~~a~~~l 207 (322)
.+.++|++.+-| -|-|++..| +|...+..|.++.+. -..+|||+.|+|...-|+.+.+
T Consensus 300 ~L~~aGad~vkVGiGpGSiCtTr~v~g--------vG~pQ~sAv~~~a~~~~~~~~~~g~~vpiiADGGi~~sGDi~KAl 371 (497)
T PRK07107 300 YLAEAGADFVKVGIGGGSICITREQKG--------IGRGQATALIDVAKARDEYFERTGVYIPICSDGGIVHDYHMTLAL 371 (497)
T ss_pred HHHHCCCCEEEECCCCCCCCEECCCCC--------CCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHH
T ss_conf 999808986897115996621130125--------677348899999999888777416763287178756554599998
Q ss_pred H-CCCCEEEECC
Q ss_conf 2-0352344122
Q gi|254781167|r 208 P-SVDGVMIGRA 218 (322)
Q Consensus 208 ~-~~dgvMigRg 218 (322)
. |+|.||+|.-
T Consensus 372 aaGA~~VMlGsl 383 (497)
T PRK07107 372 AMGADFIMLGRY 383 (497)
T ss_pred HCCCCEEEECCC
T ss_conf 538988998811
No 178
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.01 E-value=0.021 Score=37.58 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=66.0
Q ss_pred EEEEECC-CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9986113-456653220145543200012201210013566402577421227661046787666738875302577778
Q gi|254781167|r 120 TVKCRIG-VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE 198 (322)
Q Consensus 120 svK~RlG-~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~ 198 (322)
.|+.+-| +++...+..-.++++.+.+. ++.+.|= -+.| . .+-.+.+.+.|.++.+.. .+|+..-|||+
T Consensus 15 ~Vrl~~G~~~~~~~~~dP~~~A~~~~~~-a~~lhiv----DLd~---a--~~g~~~n~~~I~~i~~~~-~~piqvGGGIr 83 (228)
T PRK04128 15 AVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVV----DLDG---A--FEGKPKNLDVVKNIIEET-GLKVQVGGGFR 83 (228)
T ss_pred EEECCCCCCCCCEECCCHHHHHHHHHHC-CCEEEEE----ECCC---C--CCCCCCHHHHHHHHHHHC-CCEEEECCCCC
T ss_conf 8966155778887878999999999966-9989999----8803---0--149832699999998654-96289738607
Q ss_pred CHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9989888742-03523441220001243999999871
Q gi|254781167|r 199 DMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 199 ~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
|.+++.+.++ |++=|.+|..++ ||-++.++...+.
T Consensus 84 s~e~i~~~l~~Ga~kViigt~a~-~~~~l~~~~~~~~ 119 (228)
T PRK04128 84 TYESIKDAYEIGVENVIIGTKAF-DIEFLEKITSEFN 119 (228)
T ss_pred CHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHHCC
T ss_conf 79999999968997698145125-8089999997264
No 179
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.01 E-value=0.14 Score=31.54 Aligned_cols=174 Identities=16% Similarity=0.263 Sum_probs=109.3
Q ss_pred ECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81703324776089789830274578469998269989999988753104537774425641367766688999985589
Q gi|254781167|r 23 YTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPD 102 (322)
Q Consensus 23 ~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~ 102 (322)
=|+.|-+.++- .=+++.+ .-.+.+++.-+=.-|.-.+ -+++..+.|.|.+-+=--. +..
T Consensus 36 GTPLIk~eG~~--aV~~lr~-~fP~~~ivAD~KtmDaG~~--Ea~~A~~AGADivtVlG~a----------------~d~ 94 (429)
T PRK07028 36 GTPLIKSEGMN--AIRTLRK-NFPDLTIVADMKTMDTGAM--EVEMAAKAGADVVCILGVA----------------DDS 94 (429)
T ss_pred CCHHHHHHHHH--HHHHHHH-HCCCCEEEEEEEECCCCHH--HHHHHHHCCCCEEEEECCC----------------CHH
T ss_conf 76888864189--9999998-7899869887640455088--9999987699889994578----------------836
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999850279069998611345665322014554320001220121001356640257742122766104678766
Q gi|254781167|r 103 IVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEI 182 (322)
Q Consensus 103 ~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l 182 (322)
-+.+.+++.++ .++.|-|-+ ++ ..+..+-++.+++.|++.|.+|-=. +|+-.+.--|+.++++
T Consensus 95 TI~~aV~aA~k-~G~~v~vDl-I~------v~d~~~ra~el~~lGvd~I~vH~G~---------D~Q~~g~~p~~~l~~v 157 (429)
T PRK07028 95 TIADAVRAARK-YGVLVMADL-IN------VPDPVKRAVELEELGVDIINVHVGI---------DQQMLGKDPLELLKKV 157 (429)
T ss_pred HHHHHHHHHHH-CCCEEEEEE-CC------CCCHHHHHHHHHHCCCCEEEEEEEE---------CHHHCCCCHHHHHHHH
T ss_conf 99999999997-098899985-58------9988999999997099889997623---------3553179849999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHH---HHHHHHHCCC
Q ss_conf 6738875302577778998988874-2035234412200012439---9999987199
Q gi|254781167|r 183 KKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAML---TTVDEYFSNP 236 (322)
Q Consensus 183 ~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if---~~I~~~l~~~ 236 (322)
++.+ ..+|-.-|+|+. +++.+.. .|+|=|-+|+++.+.+--- ++|++.+...
T Consensus 158 ~~~~-~~~vAVAGGi~~-~t~~~~v~~GAdIvIVGgaI~~a~dp~~aAr~ir~ai~~~ 213 (429)
T PRK07028 158 SEEV-SIPIAAAGGLDA-ETAVKAVEAGADIVIVGGNIYKSADVTGAARDIREALDSP 213 (429)
T ss_pred HHHC-CCEEEEECCCCH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9755-971899668787-7699999759989998940057999799999999997376
No 180
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=96.00 E-value=0.0086 Score=40.40 Aligned_cols=68 Identities=24% Similarity=0.329 Sum_probs=53.9
Q ss_pred CHHHHHHHHCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CC
Q ss_conf 0145543200012201210---0135664025774212276610467876667388753025777789989888742-03
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWI---HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SV 210 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~iti---H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~ 210 (322)
...+-++.+.++|+|.|.| ||-+. .-.+.++.+|+.+|+++|+ -|+|-|.+.+..+.+ |+
T Consensus 223 ~~~eRa~~Lv~aGvDvivIDtAhGhs~---------------~vi~~ik~ik~~~p~~~iI-aGNVaT~e~a~~Li~aGA 286 (467)
T pfam00478 223 DDLERAEALVEAGVDVIVIDSAHGHSE---------------YVLEMIKWIKKKYPDLDVI-AGNVVTAEAARELIDAGA 286 (467)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCH---------------HHHHHHHHHHHCCCCCCEE-EEEECCHHHHHHHHHHCC
T ss_conf 599999999876998899734454418---------------8999999987407877378-510058999999997077
Q ss_pred CCEEEECC
Q ss_conf 52344122
Q gi|254781167|r 211 DGVMIGRA 218 (322)
Q Consensus 211 dgvMigRg 218 (322)
|+|-||=|
T Consensus 287 D~vKVGiG 294 (467)
T pfam00478 287 DAVKVGIG 294 (467)
T ss_pred CEEEECCC
T ss_conf 75775566
No 181
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.95 E-value=0.028 Score=36.58 Aligned_cols=138 Identities=15% Similarity=0.255 Sum_probs=75.6
Q ss_pred HHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----CCCCCCHH
Q ss_conf 9887531045377744--25641367766688999985589999999998502790699986113456----65322014
Q gi|254781167|r 64 EAAKIVEDFGYNEINL--NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDD----QIPAVALR 137 (322)
Q Consensus 64 ~aa~~~~~~g~~~idl--N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~----~~~~~~~~ 137 (322)
..++.+...|.|.||+ |+|.+. .+.-...+ +.+.+++++..+ ..+||=+-+-+ +++ ..+.+...
T Consensus 78 ~ev~~Ai~~GAdeid~vi~~~~~~-----~~~~~~~~---~~i~~v~~~~~~-~~lkvIiE~~~-~~~~~~~~~~~~~i~ 147 (231)
T pfam01791 78 AEAEEAIALGADEVDMVVNIGADG-----SEDEEQVL---AEIAAVKEACHG-EGLKVILEAYL-RGEEIKDKVDPHLVA 147 (231)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCC-----CCCHHHHH---HHHHHHHHHHHH-CCCEEEEEEEE-CCCHHCCCCCHHHHH
T ss_conf 879999987998899997246578-----95599999---999999986310-48708999851-572100326899999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC------CCHHHHHHHHH-CC
Q ss_conf 554320001220121001356640257742122766104678766673887530257777------89989888742-03
Q gi|254781167|r 138 NLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL------EDMSQALKILP-SV 210 (322)
Q Consensus 138 ~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi------~~~~~a~~~l~-~~ 210 (322)
..++...++|+|.|=. -|. .++ ....+-+-+..+++.... .++|...||| .+.+++.++++ |+
T Consensus 148 ~a~ria~e~GaD~vKt--stg----~~~---~gat~~~v~~~~~~~~~~-~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGA 217 (231)
T pfam01791 148 KATRVGAEAGADFVKT--STG----FGE---RGATEEDVQIFKEVVGGA-PPGVKASGGIKEKDFLRTVEDAIALIEAGA 217 (231)
T ss_pred HHHHHHHHHCCCEEEE--CCC----CCC---CCCCHHHHHHHHHHHCCC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999959998981--578----788---877888999999985687-874899338686437899999999998699
Q ss_pred C--CEEEECCCCC
Q ss_conf 5--2344122000
Q gi|254781167|r 211 D--GVMIGRAAYK 221 (322)
Q Consensus 211 d--gvMigRga~~ 221 (322)
+ |+..||.++.
T Consensus 218 ~~~G~s~Gr~i~q 230 (231)
T pfam01791 218 DRIGVSAGRAIWQ 230 (231)
T ss_pred CHHHHHHHHHHHC
T ss_conf 8120999899876
No 182
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.034 Score=35.95 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=70.0
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
...+.++..++.|+.++.+ . -+.| ... -.+-+-+.++++.+.. +.++-.-|+|+|.+++...++ |++-|
T Consensus 32 ~P~~~a~~~~~~Ga~~lHl--V--DLdg---A~~--g~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rV 101 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHL--V--DLDG---AKA--GGPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARV 101 (241)
T ss_pred CHHHHHHHHHHCCCCEEEE--E--ECCC---CCC--CCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 9899999999809958988--6--2663---215--8755499999999857-997784087678999999998799889
Q ss_pred EEECCCCCHHHHHHHHHHHHC
Q ss_conf 441220001243999999871
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~ 234 (322)
-+|..|..||-++.++.+.+.
T Consensus 102 iiGt~av~~p~~v~~~~~~~g 122 (241)
T COG0106 102 IIGTAAVKNPDLVKELCEEYG 122 (241)
T ss_pred EEECCEECCHHHHHHHHHHCC
T ss_conf 980312169999999999859
No 183
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.12 Score=31.92 Aligned_cols=132 Identities=23% Similarity=0.227 Sum_probs=77.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 84699982699899999887531045377--7442564136776668899998558999999999850279069998611
Q gi|254781167|r 48 KPLALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 48 ~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
..+++-|.+.|...+.+-.+.+++.|.|. +|+==|-=+|..+ +| -.+++++++.++.|+.|-+=+
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiT---fG----------p~~v~~l~~~t~~p~DvHLMV 70 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNIT---FG----------PPVVKALRKITDLPLDVHLMV 70 (220)
T ss_pred CEEEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---CC----------HHHHHHHHHCCCCCEEEEEEC
T ss_conf 46641564277767999999999769987999645787678733---48----------999998863689735899732
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HH
Q ss_conf 34566532201455432000122012100135664025774212276610467876667388753025777789989-88
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ-AL 204 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~-a~ 204 (322)
++ -..+++.+.++|++.||+|.-.. +--+..+..+++.....=+..|= .|+-+ ..
T Consensus 71 -----~~---p~~~i~~fa~agad~It~H~E~~--------------~~~~r~i~~Ik~~G~kaGv~lnP--~Tp~~~i~ 126 (220)
T COG0036 71 -----EN---PDRYIEAFAKAGADIITFHAEAT--------------EHIHRTIQLIKELGVKAGLVLNP--ATPLEALE 126 (220)
T ss_pred -----CC---HHHHHHHHHHHCCCEEEEEECCC--------------CCHHHHHHHHHHCCCEEEEEECC--CCCHHHHH
T ss_conf -----89---89999999981999899971277--------------68999999999759857799789--99778999
Q ss_pred HHHHCCCCEEEE
Q ss_conf 874203523441
Q gi|254781167|r 205 KILPSVDGVMIG 216 (322)
Q Consensus 205 ~~l~~~dgvMig 216 (322)
..++.+|-|++=
T Consensus 127 ~~l~~vD~VllM 138 (220)
T COG0036 127 PVLDDVDLVLLM 138 (220)
T ss_pred HHHHHCCEEEEE
T ss_conf 898657899998
No 184
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=95.91 E-value=0.11 Score=32.31 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=91.9
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCC
Q ss_conf 982699899999887531045377744256413677666889999855899999999985027--906999861134566
Q gi|254781167|r 53 QIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQ 130 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~ 130 (322)
-..+.+|+.+.+.++.+.+.||..+-+-.|=|...- .+++.-.+.++++++++ ++.+.|-.--+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~Gf~~~K~k~g~~~~~~----------~~~~~di~~v~~ir~~~g~~~~l~vDaN~~~--- 200 (357)
T cd03316 134 GGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGG----------EDLREDLARVRAVREAVGPDVDLMVDANGRW--- 200 (357)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC----------CCHHHHHHHHHHHHHHHCCCCEEEECCCCCC---
T ss_conf 478999999999999999769978985368886441----------2699999999999998299956986576555---
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--
Q ss_conf 532201455432000122012100135664025774212276610467876667388753025777789989888742--
Q gi|254781167|r 131 IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-- 208 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-- 208 (322)
+.....++++.+++.++.++- ...++-|++-.++|++.. .+||.+.=.+.+..++.++++
T Consensus 201 -~~~~A~~~~~~l~~~~l~~iE----------------qP~~~~d~~~~~~l~~~~-~~pI~~~Es~~~~~~~~~~i~~~ 262 (357)
T cd03316 201 -DLAEAIRLARALEEYDLFWFE----------------EPVPPDDLEGLARLRQAT-SVPIAAGENLYTRWEFRDLLEAG 262 (357)
T ss_pred -CHHHHHHHHHHHHHHHHHHHC----------------CCCCCCCHHHHHHHHHCC-CCCEEECCCCCCHHHHHHHHHCC
T ss_conf -799999999988654466505----------------898955799999998628-99688178878878888888707
Q ss_pred CCCCEEEECCCCC
Q ss_conf 0352344122000
Q gi|254781167|r 209 SVDGVMIGRAAYK 221 (322)
Q Consensus 209 ~~dgvMigRga~~ 221 (322)
.+|.+++-=.-.|
T Consensus 263 a~di~~~d~~~~G 275 (357)
T cd03316 263 AVDIIQPDVTKVG 275 (357)
T ss_pred CCCEEEECCCCCC
T ss_conf 7763762674469
No 185
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.87 E-value=0.14 Score=31.37 Aligned_cols=133 Identities=18% Similarity=0.237 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 99999887531045377744256413677666889999855899999999985027906999861134566532201455
Q gi|254781167|r 60 SKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNL 139 (322)
Q Consensus 60 ~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~ 139 (322)
+...+-++.+.+.|.+.|.+-.-=|.|.- +.....+.++.+++.+++|+.|-+-+. ........+
T Consensus 12 ~~~~E~a~~~~~aGa~~i~~~~~~~~~~~-----------~~~~~~~~i~~~~~~t~~P~~v~~~~~----~~~~~~~~~ 76 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEE-----------AETDDKEVLKEVAAETDLPLGVQLAIN----DAAAAVDIA 76 (200)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCHHH-----------HHHHHHHHHHHHHHHCCCCEEEEEECC----CCCCCCHHH
T ss_conf 78999999998688736886488798246-----------169999999999970799879984205----666677599
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHCCCCEEEECC
Q ss_conf 4320001220121001356640257742122766104678766673887530257777899898887-420352344122
Q gi|254781167|r 140 VKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI-LPSVDGVMIGRA 218 (322)
Q Consensus 140 ~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~-l~~~dgvMigRg 218 (322)
++.+.++|++.+.+|+-- .+...-.++.++++++..++.+++.--.-.+...+... ..++|.|++...
T Consensus 77 ~~~~~~~g~d~v~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~a~~~g~~~v~~~~~ 145 (200)
T cd04722 77 AAAARAAGADGVEIHGAV-----------GYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred HHHHHHCCCCEEEECCCC-----------CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999998399989978999-----------654300689999999844896499968999999999999809979997087
No 186
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=95.87 E-value=0.039 Score=35.56 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 99982699899999887531045377--7442564136776668899998558999999999850279069998611345
Q gi|254781167|r 51 ALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVD 128 (322)
Q Consensus 51 ~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~ 128 (322)
++-|...|...+.+..+.+++.|+|. ||+==|-=+|. -++| -++++++++.+++|+-|-+=.
T Consensus 3 spSil~ad~~~l~~~i~~l~~~g~d~iHiDimDG~FVpn---~t~g----------~~~i~~ir~~t~~~~DvHLMv--- 66 (201)
T pfam00834 3 APSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPN---LTIG----------PLVVEALRPLTELPLDVHLMV--- 66 (201)
T ss_pred EHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCC----------HHHHHHHHHCCCCCEEEEEEE---
T ss_conf 565741689999999999997699989982767972775---5558----------779999986389963899998---
Q ss_pred CCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 66532201455432000122012100135
Q gi|254781167|r 129 DQIPAVALRNLVKSIKKSGVNGIWIHARK 157 (322)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~itiH~Rt 157 (322)
. + -..+++.+.++|++.||+|.-+
T Consensus 67 -~-~---P~~~i~~~~~~g~d~i~~H~E~ 90 (201)
T pfam00834 67 -E-E---PDRIIPDFAEAGADIISFHAEA 90 (201)
T ss_pred -E-C---HHHHHHHHHHCCCCEEEECHHH
T ss_conf -3-7---7663999987399889975444
No 187
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.81 E-value=0.021 Score=37.49 Aligned_cols=156 Identities=18% Similarity=0.211 Sum_probs=96.0
Q ss_pred EEECCCHHHHHHHHHHHH-C-CCCCE-EEECCCCCHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 982699899999887531-0-45377-74425641367766688999--98----5589999999998502790699986
Q gi|254781167|r 53 QIGGADISKLVEAAKIVE-D-FGYNE-INLNVGCPSARVHEGSFGAC--LM----LNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~-~-~g~~~-idlN~GCP~~~v~~~g~Gaa--Ll----~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
..|+++.+.+.++.+.+. + +.=|. || |-.--...-+||. || -+++.+.++++...+ .+..+-|-+
T Consensus 94 ~~F~Gs~~~L~~vr~~~~lPiLrKDFIid-----~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~-lgl~~LvEv 167 (261)
T PRK00278 94 RFFQGSFEYLRAARAAVSLPVLRKDFIID-----PYQIYEARAAGADAILLIVAALDDEQLKELLDLAHE-LGLDVLVEV 167 (261)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEHEECC-----HHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHH-HCCEEEEEE
T ss_conf 32488799999999866998772010176-----999999998189857898875589999999999998-299079776
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHH
Q ss_conf 1134566532201455432000122012100135664025774212276610467876667388-753025777789989
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQ 202 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~ 202 (322)
. +.+ |+ +++.++|++.|-|-.|. ..+...|.+...++....| +..++.-+||.+.+|
T Consensus 168 h-------~~~---El-~~a~~~~a~iIGINnRn-----------L~t~~vd~~~~~~L~~~ip~~~~~VsESGI~~~~d 225 (261)
T PRK00278 168 H-------DEE---EL-ERALKLGAPLIGINNRN-----------LKTFEVDLDTTERLAPLIPKDRLLVSESGIFTPED 225 (261)
T ss_pred C-------CHH---HH-HHHHHCCCCEEEEECCC-----------CHHCEECHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 8-------999---99-99984799889874677-----------11200378999999964899988997999999999
Q ss_pred HHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 888742-0352344122000124399999987199
Q gi|254781167|r 203 ALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 203 a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
+..+.. |+|||+||-+.+..|-.-..+++.+.++
T Consensus 226 ~~~l~~~G~davLIGeslm~~~dp~~~l~~L~~~~ 260 (261)
T PRK00278 226 LKRLAKAGADAFLVGESLMRADDPGAALRELFGGG 260 (261)
T ss_pred HHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHCC
T ss_conf 99999779999998978767999899999997079
No 188
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=95.81 E-value=0.025 Score=36.93 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=64.3
Q ss_pred HCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 50279069998611345665322014554320001220121001356640257742122766104678766673887530
Q gi|254781167|r 112 CKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFI 191 (322)
Q Consensus 112 ~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i 191 (322)
.++.+-|.+..+-.. .+.....+++++++.+|+++|.||-=+. +.|..+++ .-+++.+..+++.. +.||
T Consensus 104 ~~~~~~~~~fQly~~----~d~~~~~~~i~ra~~ag~~al~ltvD~~-~~g~r~~d-----~r~~~~i~~l~~~~-~~Pv 172 (301)
T pfam01070 104 AAAAGGPLWFQLYVP----KDRELTEDLLERAEAAGYKALVLTVDTP-VLGNRERD-----LRNGDDLAWLRDQW-KGPL 172 (301)
T ss_pred HHHCCCCEEEEEEEC----CCHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCC-----CCCHHHHHHHHHHC-CCCE
T ss_conf 985799768998745----8889999999999974999799972687-65778532-----04399999999866-9988
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCEEEE
Q ss_conf 25777789989888742-03523441
Q gi|254781167|r 192 GLNGGLEDMSQALKILP-SVDGVMIG 216 (322)
Q Consensus 192 ~~NGdi~~~~~a~~~l~-~~dgvMig 216 (322)
+.- +|.+.+||..+.+ |+|||.|.
T Consensus 173 ivK-GI~s~eDA~~a~~~Gv~~I~VS 197 (301)
T pfam01070 173 VLK-GILSPEDAKRAVEAGVDGIVVS 197 (301)
T ss_pred EEE-CCCCHHHHHHHHHCCCCEEEEC
T ss_conf 998-2899999999998599999964
No 189
>KOG0538 consensus
Probab=95.80 E-value=0.044 Score=35.15 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=94.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCEEEE----------------CCCCCHH-----------HHHHHHHHHHHH---
Q ss_conf 69998269-9899999887531045377744----------------2564136-----------776668899998---
Q gi|254781167|r 50 LALQIGGA-DISKLVEAAKIVEDFGYNEINL----------------NVGCPSA-----------RVHEGSFGACLM--- 98 (322)
Q Consensus 50 ~~~Ql~g~-~p~~~~~aa~~~~~~g~~~idl----------------N~GCP~~-----------~v~~~g~GaaLl--- 98 (322)
.-.||+-. |-+.-.+-.+-++..||..+=+ +|--|.. .=+..+..|++.
T Consensus 123 rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~ 202 (363)
T KOG0538 123 RWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYV 202 (363)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 79999853744689999999997296699998346112676044440256874210026555665567866313466664
Q ss_pred ---HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCC
Q ss_conf ---5589999999998502790699986113456653220145543200012201210--01356640257742122766
Q gi|254781167|r 99 ---LNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKIPN 173 (322)
Q Consensus 99 ---~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~ 173 (322)
-||.+--+=++-++.-+++||-||==+ ..|=++.+.++|++.|.| ||- |+..|. |
T Consensus 203 ~~~id~Sl~W~Di~wLr~~T~lPIvvKGil----------t~eDA~~Ave~G~~GIIVSNHGg---------RQlD~v-p 262 (363)
T KOG0538 203 SSQIDPSLSWKDIKWLRSITKLPIVVKGVL----------TGEDARKAVEAGVAGIIVSNHGG---------RQLDYV-P 262 (363)
T ss_pred HCCCCCCCCHHHHHHHHHCCCCCEEEEEEC----------CCHHHHHHHHHCCCEEEEECCCC---------CCCCCC-C
T ss_conf 237887777424699985275876998311----------43879999980886599857875---------325766-4
Q ss_pred CHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 10467876667388-753025777789989888742-0352344122
Q gi|254781167|r 174 LDYDIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 174 ~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
|--+...++.+++. .+++..-|||.+-.|..+.+. |+-||.|||-
T Consensus 263 AtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP 309 (363)
T KOG0538 263 ATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRP 309 (363)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 11887999999862854799726733542799998516736885672
No 190
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.80 E-value=0.083 Score=33.12 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=66.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 699982699899999887531045377--744256413677666889999855899999999985027906999861134
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV 127 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~ 127 (322)
+++-|...|...+.+..+.+++.|++. ||+-=|==+|. -++| -++++++++.+++|+-|-+=+
T Consensus 6 IspSil~ad~~~l~~~i~~l~~~g~~~lHiDImDG~FVpn---~t~g----------~~~v~~i~~~t~~~~DvHLMv-- 70 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPN---LTIG----------PPVVEAIRKVTKLPLDVHLMV-- 70 (220)
T ss_pred EEHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCC----------HHHHHHHHHHCCCCEEEEEEE--
T ss_conf 8687740799999999999997699989995757844775---5639----------999999984189964789997--
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56653220145543200012201210013566402577421227661046787666738875302577778998988874
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l 207 (322)
.+ -..+++.+.++|++.||+|.-+. + .. -+.+..+++.....=+..|- -++.+....++
T Consensus 71 ---~~---P~~~i~~~~~~g~d~I~~H~Ea~--------~-----~~-~~~i~~ik~~g~k~Glalnp-~T~~~~l~~~l 129 (220)
T PRK05581 71 ---EN---PDRYVPDFAKAGADIITFHVEAS--------E-----HI-HRLLQLIKEAGIKAGLVLNP-ATPLEYLEYVL 129 (220)
T ss_pred ---EC---HHHHHHHHHHCCCCEEEECCCCC--------C-----CH-HHHHHHHHHCCCCEEEEECC-CCCHHHHHHHH
T ss_conf ---18---88879999973998899816750--------2-----79-99999999749970467669-99989999998
Q ss_pred HCCCCEEEE
Q ss_conf 203523441
Q gi|254781167|r 208 PSVDGVMIG 216 (322)
Q Consensus 208 ~~~dgvMig 216 (322)
+.+|.|++=
T Consensus 130 ~~iD~VlvM 138 (220)
T PRK05581 130 PLLDLVLLM 138 (220)
T ss_pred HHHCEEEEE
T ss_conf 741525899
No 191
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=95.74 E-value=0.011 Score=39.47 Aligned_cols=147 Identities=24% Similarity=0.308 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 998999998875310453777442564136776668899998558-9999999998502790699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP-DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p-~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
.-|+...++.++++.. +=.|-||.. +=-|.-.| = ++- .=+.+-++.+.+.+++||=|| =.|+. -+
T Consensus 136 ~g~~~~~~aid~i~Ad-AL~iHlN~~--QE~vqpEG-D----r~F~~G~l~~i~~~~~~~~vPVIvK-EvG~G--~S--- 201 (349)
T TIGR02151 136 YGVEEAQEAIDMIEAD-ALAIHLNVL--QELVQPEG-D----RNFSKGWLEKIAEICSAVSVPVIVK-EVGFG--IS--- 201 (349)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHH--CCCCCCCC-C----HHHHHHHHHHHHHHHHHCCCCEEEE-ECCCC--CC---
T ss_conf 4889999999875101-335543233--02557999-7----0156538999999996528987998-21579--98---
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHH---HHCC--CCCCCCC--CCCCHHHH-------HHHHHH-HCCCCCCCCCCCCC
Q ss_conf 145543200012201210013--566---4025--7742122--76610467-------876667-38875302577778
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHAR--KAI---LKGL--SPKDNRK--IPNLDYDI-------VYEIKK-ENPDLFIGLNGGLE 198 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~R--t~~---~~g~--s~~~~~~--~~~~~~~~-------i~~l~~-~~~~~~i~~NGdi~ 198 (322)
.+.++.+.+.||++|-|=|+ |=+ -.+- ....+++ .+..-|+| +.+++. ..++.++|+.|||+
T Consensus 202 -~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WGipT~~sL~~~~~~~~~~~~~iASGG~r 280 (349)
T TIGR02151 202 -KEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWGIPTAASLLEVRSIDAPDAPLIASGGLR 280 (349)
T ss_pred -HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf -8999999878900887078767559999988751575235788877774148866899999864212477368846777
Q ss_pred CHHHHHHHHH-CCCCEEEECC
Q ss_conf 9989888742-0352344122
Q gi|254781167|r 199 DMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 199 ~~~~a~~~l~-~~dgvMigRg 218 (322)
|.=|+.+.+. |++-+=++|.
T Consensus 281 ~GlD~AKAlALGA~~~G~A~~ 301 (349)
T TIGR02151 281 TGLDVAKALALGADAVGMARP 301 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 888999999962118888899
No 192
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.73 E-value=0.016 Score=38.33 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
.+....++.+.+-.|-..+++-++ +. +. +-+.|+++++.+.+.+++.-|||+|.++|.++++ |+|
T Consensus 134 ~~~~~ayAlaae~lg~~~iYLEgS--------Ga---~v---~~e~V~~vk~~l~~~~LivGGGIrs~e~a~~~~~AgAD 199 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLEYS--------GA---YG---PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECC--------CC---CC---CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 899999999999829938999568--------99---79---99999999984679709992897999999999986999
Q ss_pred CEEEECCCCCHHHHHHHH
Q ss_conf 234412200012439999
Q gi|254781167|r 212 GVMIGRAAYKNSAMLTTV 229 (322)
Q Consensus 212 gvMigRga~~~P~if~~I 229 (322)
-|-+|-....||-.+.++
T Consensus 200 ~IVvGn~iee~~~~~l~~ 217 (219)
T cd02812 200 TIVVGNIVEEDPNAALET 217 (219)
T ss_pred EEEECCCEEECHHHHHHH
T ss_conf 999887224068999764
No 193
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.71 E-value=0.025 Score=36.92 Aligned_cols=114 Identities=24% Similarity=0.275 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99998558999999999850279069998611345665322014554320001220121001356640257742122766
Q gi|254781167|r 94 GACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPN 173 (322)
Q Consensus 94 GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~ 173 (322)
||--|+|+++ ++++.+ ++.||-+|==++ .+.+.|+--++.+...|...|.+--| |.++-+..+.-.
T Consensus 208 GARnmqNf~L----Lk~vg~-~~kPVLlKrg~~----ati~ewl~AaEyi~~~Gn~~vilceR-----GirT~e~~tRnt 273 (360)
T PRK12595 208 GARNMQNFEL----LKAAGR-VNKPVLLKRGLS----ATIEEFIYAAEYIMSQGNDQIILCER-----GIRTYEKATRNT 273 (360)
T ss_pred CCHHCCCHHH----HHHHHC-CCCCEEEECCCC----CCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCCCCCC
T ss_conf 8410359999----999861-399379607999----99999999999998679987899917-----756778766889
Q ss_pred CHHHHHHHHHHHCCCCCCCCC----CCCCCHHH--HHHHH-HCCCCEEEECCCCCHHH
Q ss_conf 104678766673887530257----77789989--88874-20352344122000124
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLN----GGLEDMSQ--ALKIL-PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~N----Gdi~~~~~--a~~~l-~~~dgvMigRga~~~P~ 224 (322)
.||..|..+|+ .+++||+.- +|.++.-. +...+ -|+||+||-- .-||-
T Consensus 274 ldl~avp~~k~-~thLPVivDPSH~~G~r~lv~~~a~aa~a~GaDGlmIEv--Hp~P~ 328 (360)
T PRK12595 274 LDISAVPILKQ-ETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEV--HPDPA 328 (360)
T ss_pred CCHHHHHHHHC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE--CCCHH
T ss_conf 88678899864-999998989965215575899999999974999799986--68823
No 194
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=95.67 E-value=0.065 Score=33.91 Aligned_cols=131 Identities=24% Similarity=0.241 Sum_probs=66.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 699982699899999887531045377--744256413677666889999855899999999985027906999861134
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV 127 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~ 127 (322)
+++-|...|...+.+..+.+++.|.+. +|+-=|==+|. -++| .++++++++.+++|+-|-+=.
T Consensus 2 IspSil~ad~~~l~~~i~~~~~~g~d~lHiDimDG~Fvpn---~t~g----------~~~v~~i~~~t~~~~DvHLMv-- 66 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPN---LTFG----------PPVVKALRKHTDLPLDVHLMV-- 66 (211)
T ss_pred EEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCC----------HHHHHHHHHHCCCCEEEEEEE--
T ss_conf 1573531799999999999997699989995757972786---6759----------899999987579970589987--
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56653220145543200012201210013566402577421227661046787666738875302577778998988874
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l 207 (322)
.+ -..+++.+.++|++.||+|.-+. .. -.+.+..+++.....-+..|-+ +..+.....+
T Consensus 67 ---~~---P~~~i~~~~~~g~d~I~~H~E~~-------------~~-~~~~i~~ik~~g~~~Glal~p~-T~~~~l~~~l 125 (211)
T cd00429 67 ---EN---PERYIEAFAKAGADIITFHAEAT-------------DH-LHRTIQLIKELGMKAGVALNPG-TPVEVLEPYL 125 (211)
T ss_pred ---CC---HHHHHHHHHHHCCCEEEECCCCC-------------CC-HHHHHHHHHHCCCCCEEEECCC-CCHHHHHHHH
T ss_conf ---18---87769999970998899864322-------------08-9999999997398723575489-9989999999
Q ss_pred HCCCCEEEE
Q ss_conf 203523441
Q gi|254781167|r 208 PSVDGVMIG 216 (322)
Q Consensus 208 ~~~dgvMig 216 (322)
+.+|-|++=
T Consensus 126 ~~~D~vliM 134 (211)
T cd00429 126 DEVDLVLVM 134 (211)
T ss_pred HHHCEEEEE
T ss_conf 751522798
No 195
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.62 E-value=0.23 Score=29.85 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=82.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHC-CCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEE
Q ss_conf 846999826998999998875310-45377--744256413677666889999855899999999985027-90699986
Q gi|254781167|r 48 KPLALQIGGADISKLVEAAKIVED-FGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKC 123 (322)
Q Consensus 48 ~p~~~Ql~g~~p~~~~~aa~~~~~-~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~ 123 (322)
.+-+.+=.|-+++.+.+...+++. .+++. ||+- +|. -+.+.+.++.+++.. +.+|-
T Consensus 96 ~~~v~vsiGi~~~d~~r~~~i~~~~~~~~~i~iDvA----------~G~-------~~~~~~~i~~ik~~~~~~~ii--- 155 (347)
T PRK05096 96 LKHVMVSTGTSDADFEKTKQILALSPALNFICIDVA----------NGY-------SEHFVQFVAKAREAWPDKTIC--- 155 (347)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECC----------CCC-------CHHHHHHHHHHHHHCCCCEEE---
T ss_conf 673899991787899999999952899898999779----------862-------088999999999878998088---
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCCC
Q ss_conf 113456653220145543200012201210------013566402577421227661046787666738--875302577
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN--PDLFIGLNG 195 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~--~~~~i~~NG 195 (322)
.| +..+.+-++.+.++|+|.|-| .|-|+..-| +|-.....|.++.+.. -..+||+-|
T Consensus 156 -aG------NvaT~e~~~~L~~~GaD~vkVGIG~Gs~CtTR~~tG--------vG~Pq~sai~~c~~~~~~~~~~iiaDG 220 (347)
T PRK05096 156 -AG------NVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTG--------VGYPQLSAVIECADAAHGLGGMIVSDG 220 (347)
T ss_pred -CC------CHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC--------CCCHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf -14------312399999999737889997677875430452235--------673037899999998605799489568
Q ss_pred CCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 778998988874-20352344122
Q gi|254781167|r 196 GLEDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 196 di~~~~~a~~~l-~~~dgvMigRg 218 (322)
+|.+.-|+.+.+ -|+|.||+|.-
T Consensus 221 Gi~~~gDi~KAla~GAd~VM~G~~ 244 (347)
T PRK05096 221 GCTVPGDVAKAFGGGADFVMLGGM 244 (347)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 847504799998738988986731
No 196
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.62 E-value=0.04 Score=35.48 Aligned_cols=163 Identities=21% Similarity=0.218 Sum_probs=85.5
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEE-EECCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 27457846999826998999998875310453777-44256413677666----88999985589999999998502790
Q gi|254781167|r 43 FSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEI-NLNVGCPSARVHEG----SFGACLMLNPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 43 ~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~i-dlN~GCP~~~v~~~----g~GaaLl~~p~~~~~iv~~~~~~~~~ 117 (322)
+.|--+|...|=.|.+- +.--.+.-+++|...+ ++---.-...+.+. --||..|+|++++.++-+ +++
T Consensus 129 ~KPRTsPysFqGlg~eG--L~~L~~~~~e~GlpvvTEV~~~~~ve~v~~~vDilQIGARnmqN~~LL~evg~-----~~k 201 (335)
T PRK08673 129 FKPRTSPYSFQGLGEEG--LKLLAEAREETGLPIVTEVMDPRDVELVAEYADILQIGARNMQNFDLLKEVGK-----TNK 201 (335)
T ss_pred CCCCCCCCCCCCCCHHH--HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCEEEECHHHHCCHHHHHHHHH-----HCC
T ss_conf 57899985414551669--99999999986995289966899999999649799989155059999999997-----299
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--
Q ss_conf 699986113456653220145543200012201210013566402577421227661046787666738875302577--
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG-- 195 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG-- 195 (322)
||-+|==+. .+.+.|+.-++.+...|...|.+--| |..+-+..+.-.+||..|..+|+ .+++||+..=
T Consensus 202 PVllKrg~~----~ti~ewl~AaEyi~~~Gn~~ViLcER-----Girtfe~~tRntlDl~aip~~k~-~thlPVI~DPSH 271 (335)
T PRK08673 202 PVLLKRGMS----ATIEEWLMAAEYILAEGNPNVILCER-----GIRTFETATRNTLDLSAVPVLKK-LTHLPVIVDPSH 271 (335)
T ss_pred EEEECCCCC----CCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCCCCCCCCHHHHHHHHH-CCCCCEEECCCC
T ss_conf 489737887----88999987899999769986799934-----65456766678778788899971-889888988822
Q ss_pred --CCCCHHH--HHH-HHHCCCCEEEECCCCCHHH
Q ss_conf --7789989--888-7420352344122000124
Q gi|254781167|r 196 --GLEDMSQ--ALK-ILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 196 --di~~~~~--a~~-~l~~~dgvMigRga~~~P~ 224 (322)
+-++.-. +.. +..|+||+||=- .-||-
T Consensus 272 ~~G~r~~V~~la~aAiAaGaDGL~iEv--Hp~P~ 303 (335)
T PRK08673 272 ATGKRDLVEPLALAAVAAGADGLIVEV--HPDPE 303 (335)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE--CCCHH
T ss_conf 036332289999999980998899995--68812
No 197
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.57 E-value=0.015 Score=38.71 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=55.1
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
...+-++.+.++|+|.|.|-.-. |.| . .--+.++.+|+.+|+++|+ -|+|.|.+-+..+++ |+|||
T Consensus 238 ~~~eRa~~Lv~aGvDvlvIDtAh----Ghs----~----~v~~~ik~ik~~~p~v~vI-aGNVaT~~~a~~Li~aGAD~v 304 (499)
T PTZ00314 238 EDKERAAALIDAGVDVLVLDSSQ----GNS----I----YQIDFIKWIKSTYPHLEVI-AGNVVTQDQAKNLIDAGADGI 304 (499)
T ss_pred CHHHHHHHHHHCCCCEEEEECCC----CCC----H----HHHHHHHHHHHHCCCCCEE-EEEECHHHHHHHHHHCCCCEE
T ss_conf 48999999998699899981688----772----7----8999999988527988467-643310999999997499879
Q ss_pred EEECCC
Q ss_conf 441220
Q gi|254781167|r 214 MIGRAA 219 (322)
Q Consensus 214 MigRga 219 (322)
-||-|-
T Consensus 305 kVGiGp 310 (499)
T PTZ00314 305 RIGMGS 310 (499)
T ss_pred EECCCC
T ss_conf 975358
No 198
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=95.57 E-value=0.23 Score=29.91 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCCCCCCCCC
Q ss_conf 98999998875310453777442564136776668899998558999999999850279--0699986113456653220
Q gi|254781167|r 58 DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS--IPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 58 ~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~~~~~~~ 135 (322)
.++...++++.+.+.||+.+-+..||+... .-.+.++++++++. +++.+-.--+| +...
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRea~g~~~~l~iDan~~~----~~~~ 203 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGW----TLEE 203 (372)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHH---------------HHHHHHHHHHHHCCCCCEEEEECCCCC----CHHH
T ss_conf 299999999999977988387625888668---------------899999999986599988999689886----8999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCE
Q ss_conf 1455432000122012100135664025774212276610467876667388753025777789989888742-0-3523
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGV 213 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgv 213 (322)
...+++.+++.++.++- ...++-|.+..+++++..+ +||...=.+.+..+..+.++ + +|-|
T Consensus 204 A~~~~~~l~~~~l~~iE----------------eP~~~~d~~~~~~l~~~~~-~PIa~gEs~~~~~~~~~l~~~~a~div 266 (372)
T COG4948 204 AIRLARALEEYGLEWIE----------------EPLPPDDLEGLRELRAATS-TPIAAGESVYTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HHHHHHHHHHCCCCEEE----------------CCCCCCCHHHHHHHHCCCC-CCEEECCCCCCHHHHHHHHHCCCCCEE
T ss_conf 99999986434986798----------------8999888899999860689-988728746799999999971898789
Q ss_pred EE
Q ss_conf 44
Q gi|254781167|r 214 MI 215 (322)
Q Consensus 214 Mi 215 (322)
.+
T Consensus 267 ~~ 268 (372)
T COG4948 267 QP 268 (372)
T ss_pred CC
T ss_conf 03
No 199
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=95.54 E-value=0.24 Score=29.79 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=88.4
Q ss_pred CCCCEEEEEECCCHH-HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEE
Q ss_conf 578469998269989-99998875310453777442564136776668899998558999999999850279--069998
Q gi|254781167|r 46 QEKPLALQIGGADIS-KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS--IPVTVK 122 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~-~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~--~pvsvK 122 (322)
+.-|+..-+.+.+++ .+.++++.+++.||..+-+-+|+.. ++.-.+.+++++++++ +.+.+-
T Consensus 130 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~KiKig~~~---------------~~~di~~v~~ir~~~g~~~~l~vD 194 (365)
T cd03318 130 DSLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGARP---------------PADDLAHVEAIAKALGDRASVRVD 194 (365)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC---------------HHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 77744788358981999999999998089987999659999---------------899999999999865789689846
Q ss_pred EECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 61134566532201455432000122012100135664025774212276610467876667388753025777789989
Q gi|254781167|r 123 CRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ 202 (322)
Q Consensus 123 ~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~ 202 (322)
.--+| +......+++.+++.|+.++- | ..++-|++-.+++++.. .+||.+.-.+.+..+
T Consensus 195 an~~~----~~~~Ai~~~~~l~~~~~~~~E---------------e-P~~~~d~~~~~~l~~~~-~ipIa~gE~~~~~~~ 253 (365)
T cd03318 195 VNQAW----DESTAIRALPRLEAAGVELIE---------------Q-PVPRENLDGLARLRSRN-RVPIMADESVSGPAD 253 (365)
T ss_pred CCCCC----CHHHHHHHHHHHHHHCCCEEE---------------C-CCCCCCHHHHHHHHHCC-CCCEEECCCCCCHHH
T ss_conf 77788----999999999997751242033---------------7-99953699999886258-988893788799999
Q ss_pred HHHHHH--CCCCEEEECCCCC
Q ss_conf 888742--0352344122000
Q gi|254781167|r 203 ALKILP--SVDGVMIGRAAYK 221 (322)
Q Consensus 203 a~~~l~--~~dgvMigRga~~ 221 (322)
+.++++ .+|.|++.=.-.|
T Consensus 254 ~~~~i~~~a~div~~d~~~~G 274 (365)
T cd03318 254 AFELARRGAADVFSLKIAKSG 274 (365)
T ss_pred HHHHHHHCCCCCEEECCCCCC
T ss_conf 999987334442353236679
No 200
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=95.51 E-value=0.016 Score=38.32 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=53.2
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
...+-++.+.++|+|.|.|-.- .|.| .+ -.+.++.+++.+|+++|+ -|+|.+.+-+..+.+ |+|+|
T Consensus 228 ~~~eRa~~Lv~AGvDvivIDtA----hGhs----~~----vi~~ik~ik~~~~~v~vi-aGNv~T~~~a~~L~~aGaD~v 294 (486)
T PRK05567 228 DNEERAEALVKAGVDVLVVDTA----HGHS----EG----VLDRVREIKAKYPDVQII-AGNVATAEAARALIEAGADAV 294 (486)
T ss_pred CHHHHHHHHHHCCCCEEEEECC----CCCH----HH----HHHHHHHHHHCCCCCCEE-EEEECHHHHHHHHHHCCCCEE
T ss_conf 1899999999769988995044----5215----77----899999997407877368-751201999999997298769
Q ss_pred EEECC
Q ss_conf 44122
Q gi|254781167|r 214 MIGRA 218 (322)
Q Consensus 214 MigRg 218 (322)
.||=|
T Consensus 295 kVGiG 299 (486)
T PRK05567 295 KVGIG 299 (486)
T ss_pred EECCC
T ss_conf 96566
No 201
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=95.48 E-value=0.0075 Score=40.85 Aligned_cols=67 Identities=25% Similarity=0.305 Sum_probs=46.8
Q ss_pred HHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 200012201210--01356640257742122766104678766673887-53025777789989888742-035234412
Q gi|254781167|r 142 SIKKSGVNGIWI--HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 142 ~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
.+.+.|++.|-+ |+-. |..-++.--+.+.++...+++ ++|+..|||++-.|+.+.+. |+|+|++||
T Consensus 234 ~a~~tg~~~I~vsnhggr----------qlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igr 303 (360)
T COG1304 234 GAGGTGADGIEVSNHGGR----------QLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGR 303 (360)
T ss_pred HHCCCCCEEEEEECCCCC----------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 633688228999767874----------0257877699999999971887179963887877899999993776545259
Q ss_pred C
Q ss_conf 2
Q gi|254781167|r 218 A 218 (322)
Q Consensus 218 g 218 (322)
.
T Consensus 304 p 304 (360)
T COG1304 304 P 304 (360)
T ss_pred H
T ss_conf 9
No 202
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.47 E-value=0.032 Score=36.20 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=59.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 43200012201210013566402577421227661046787666738875302577778998988874-20352344122
Q gi|254781167|r 140 VKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 140 ~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRg 218 (322)
+....+.|+|.+.+=+= +... -+..+.++..|+.+..+++.. .+|+++-||| +.+++...+ .|+|||.+-++
T Consensus 116 ~~~A~~~gaDYi~~Gpv---f~T~--tK~~~~~~~g~~~l~~~~~~~-~iPvvAIGGI-~~~ni~~~~~~Ga~giAvis~ 188 (210)
T PRK00043 116 AAAAAAAGADYVGVGPI---FPTP--TKKDAKPAVGLELLREAREAI-DIPIVAIGGI-TPENAAEVLEAGADGVAVVSA 188 (210)
T ss_pred HHHHHHHCCCEEEECCC---CCCC--CCCCCCCCCCHHHHHHHHHHC-CCCEEEECCC-CHHHHHHHHHCCCCEEEEEHH
T ss_conf 99998828983887452---1479--888887778999999999847-9998998088-999999999809999997089
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 0001243999999
Q gi|254781167|r 219 AYKNSAMLTTVDE 231 (322)
Q Consensus 219 a~~~P~if~~I~~ 231 (322)
++..+-.-..+++
T Consensus 189 I~~a~dp~~a~~~ 201 (210)
T PRK00043 189 ITAAEDPAAAARA 201 (210)
T ss_pred HHCCCCHHHHHHH
T ss_conf 7769999999999
No 203
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.37 E-value=0.071 Score=33.63 Aligned_cols=89 Identities=26% Similarity=0.421 Sum_probs=54.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHH--HHHHCCCCC----CCCCCCCCH------HHHHHHHHHHC-CCCCCCC--------
Q ss_conf 01455432000122012100135--664025774----212276610------46787666738-8753025--------
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARK--AILKGLSPK----DNRKIPNLD------YDIVYEIKKEN-PDLFIGL-------- 193 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt--~~~~g~s~~----~~~~~~~~~------~~~i~~l~~~~-~~~~i~~-------- 193 (322)
.+.+-++.+.++|.|.|-||+=. -..|.+||. .+.|-|... -+.|.++++++ ++.+|+.
T Consensus 150 ~f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~~vg~d~~v~~Ris~~d~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHC
T ss_conf 99999999998399989982365548998629876899685798988998899999999999719988699984535424
Q ss_pred CCCCCCHHHHHHH---HH--CCCCEEEECCCCCHHH
Q ss_conf 7777899898887---42--0352344122000124
Q gi|254781167|r 194 NGGLEDMSQALKI---LP--SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 194 NGdi~~~~~a~~~---l~--~~dgvMigRga~~~P~ 224 (322)
.|+ .+.+|.... ++ |+|.+-|..|.+.+|-
T Consensus 230 ~~G-~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~ 264 (338)
T cd04733 230 RGG-FTEEDALEVVEALEEAGVDLVELSGGTYESPA 264 (338)
T ss_pred CCC-CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 799-99899999999998769988994688545732
No 204
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.37 E-value=0.15 Score=31.24 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf 67876667388753025777789989888742-03523441220
Q gi|254781167|r 177 DIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 177 ~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
+.+.++++..+++|+..--||.+.+|+.+.++ ++|||-||-+.
T Consensus 177 ~~i~~ik~~~~~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSai 220 (247)
T PRK13125 177 RNIKRVRELVGDVYLVAGFAIDSPEDAAKALSAGADGVVVGTAF 220 (247)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 99999998569998588328799999999985589999987899
No 205
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.34 E-value=0.26 Score=29.43 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=81.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
+.++.+-+=-.|. -...++.+.+.|+|.+-+-..++ ++-+.+++++.++ .+..+-+-+ ++
T Consensus 52 ~~~I~~DlK~~D~--g~~~~~~~~~~Gad~itVh~~~~----------------~~ti~~a~~~a~~-~~~~v~vdl-~~ 111 (206)
T TIGR03128 52 DRKVLADLKTMDA--GEYEAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKK-HGKEVQVDL-IN 111 (206)
T ss_pred CCEEEEEEEECCC--HHHHHHHHHHCCCCEEEEECCCC----------------HHHHHHHHHHHHH-CCCEEEEEE-CC
T ss_conf 9979999504474--38999999972898999943489----------------7999999999997-399799997-47
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHH
Q ss_conf 456653220145543200012201210013566402577421227661046787666738875302577778--998988
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE--DMSQAL 204 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~--~~~~a~ 204 (322)
.....+.++.+.+.|++.+.+|.-.- ....+...++.+..+++......+..-|++. ++.++.
T Consensus 112 ------~~~~~~~a~~~~~~g~d~v~~h~g~d---------~~~~~~~~~~~~~~~~~~~~~~~i~v~gGi~~~t~~~ai 176 (206)
T TIGR03128 112 ------VKDKVKRAKELKELGADYIGVHTGLD---------EQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVI 176 (206)
T ss_pred ------CCCHHHHHHHHHHCCCCEEEEECCCC---------HHHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHH
T ss_conf ------89889999999975898899502500---------443267988999999862578736367986835699998
Q ss_pred HHHHCCCCEEEECCCCCHHH
Q ss_conf 87420352344122000124
Q gi|254781167|r 205 KILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 205 ~~l~~~dgvMigRga~~~P~ 224 (322)
. .|+|-+.|||.+...+-
T Consensus 177 ~--~Gad~vVVGR~It~A~d 194 (206)
T TIGR03128 177 K--LGPDIVIVGGAITKAAD 194 (206)
T ss_pred H--CCCCEEEECCCCCCCCC
T ss_conf 6--69999998961247999
No 206
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=95.30 E-value=0.29 Score=29.11 Aligned_cols=147 Identities=14% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEE
Q ss_conf 784699982699899999887531045377744256413677666889999855899999999985027--906999861
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCR 124 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~R 124 (322)
.-|+++|+--||+......|. ..|.+.|-+|.=|=+ .+.-.| ++ ++ .+.++++- ++.. ++.|..-++
T Consensus 80 ~iP~GvnvL~nd~~aalaiA~---a~ga~FIRv~~~~g~-~~~d~G----~~-~~-~a~~~~r~-R~~l~a~v~i~aDV~ 148 (254)
T pfam03437 80 SIPLGINVLRNDAVAALAIAY---AVGADFIRVNVLTGV-AASDQG----IL-EG-NAGELARY-RKLLPSRIKILADVH 148 (254)
T ss_pred CCCEEEEEECCCCHHHHHHHH---HHCCCEEEECCEECE-EECCCC----CC-CC-CHHHHHHH-HHHCCCCCEEEEEEC
T ss_conf 887367776178589999999---829976987137653-335775----31-55-38999999-997199958997550
Q ss_pred CCCCCCCCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 13456653220145543-20001220121001356640257742122766104678766673887530257777899898
Q gi|254781167|r 125 IGVDDQIPAVALRNLVK-SIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQA 203 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~-~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a 203 (322)
.=....-....+.+.++ .++.+++|+|.|-|... -.+.+-+.+.++++..+ +|++.++|+ +.+.+
T Consensus 149 ~Kh~~~l~~~~~~~~~~~~~~~~~aDaiivTG~~T------------G~~~~~~~l~~vk~~~~-~PvlvGSGv-t~~Ni 214 (254)
T pfam03437 149 VKHAVHLGNRDIESAVLDTIERGLADAVILSGKTT------------GGEVDLEELKLAKETVP-VPVLVGSGV-NLENL 214 (254)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC------------CCCCCHHHHHHHHHHCC-CCEEEECCC-CHHHH
T ss_conf 01254579999899999999826898999787302------------79999999999996269-988995798-98899
Q ss_pred HHHHHCCCCEEEECC
Q ss_conf 887420352344122
Q gi|254781167|r 204 LKILPSVDGVMIGRA 218 (322)
Q Consensus 204 ~~~l~~~dgvMigRg 218 (322)
.+.+.-+||+-||..
T Consensus 215 ~~~l~~ADG~IVGS~ 229 (254)
T pfam03437 215 EELWSIADGFIVGTS 229 (254)
T ss_pred HHHHHHCCEEEEEHH
T ss_conf 999987899998422
No 207
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=95.29 E-value=0.091 Score=32.84 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=86.3
Q ss_pred EEECCCHHHH-HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCC--------CCEE
Q ss_conf 9826998999-99887531045377744256413677666889-----99985589999999998502--------7906
Q gi|254781167|r 53 QIGGADISKL-VEAAKIVEDFGYNEINLNVGCPSARVHEGSFG-----ACLMLNPDIVGDCIAAMCKA--------LSIP 118 (322)
Q Consensus 53 Ql~g~~p~~~-~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G-----aaLl~~p~~~~~iv~~~~~~--------~~~p 118 (322)
+++-.+-|.. ++||....- .-.+--.-.||.-.|.+...| -++.+|.+...++++...++ ++.|
T Consensus 82 ~l~hp~gE~a~ArAA~~~gi--~~~lSt~ss~slEeva~a~~~~~WfQLY~~~Dr~~~~~ll~RA~~aG~~alvlTVD~p 159 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGI--PFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMP 159 (381)
T ss_pred CCCCCCHHHHHHHHHHHHCC--CEEECCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 16789757999999997077--1783277656799998635897389984138889999999999984998799807888
Q ss_pred EEEE----EECCCCCCCCCCCHHHHHHHHCCCC-CCHHHHHHHHHHHHCCCC--------------CCCCCCCCCHHHHH
Q ss_conf 9998----6113456653220145543200012-201210013566402577--------------42122766104678
Q gi|254781167|r 119 VTVK----CRIGVDDQIPAVALRNLVKSIKKSG-VNGIWIHARKAILKGLSP--------------KDNRKIPNLDYDIV 179 (322)
Q Consensus 119 vsvK----~RlG~~~~~~~~~~~~~~~~~~~~g-~~~itiH~Rt~~~~g~s~--------------~~~~~~~~~~~~~i 179 (322)
+.=+ .|-|+.- +......+.+.+..-. .-.+-.+++........+ ....+.+..+|+.+
T Consensus 160 v~g~R~rd~rn~~~~--p~~~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di 237 (381)
T PRK11197 160 VPGARYRDAHSGMSG--PNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDL 237 (381)
T ss_pred CCCCCHHHHCCCCCC--CCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf 778665543067778--981287899886481787763344788654431001377655888999987505888999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE----ECCCCCHHH
Q ss_conf 76667388753025777789989888742-0352344----122000124
Q gi|254781167|r 180 YEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI----GRAAYKNSA 224 (322)
Q Consensus 180 ~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi----gRga~~~P~ 224 (322)
..+++.- ..|++ -=||.+++||....+ |+|||+| ||..=+-|.
T Consensus 238 ~wlr~~w-~~plv-lKGIl~~eDA~~A~~~G~dgIiVSNHGGRQLD~apa 285 (381)
T PRK11197 238 EWIREFW-DGPMV-IKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLS 285 (381)
T ss_pred HHHHHHC-CCCEE-EECCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 9999872-99767-852588999999996699889995776321567844
No 208
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.27 E-value=0.18 Score=30.58 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=13.6
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4537774425641367766688999985589999999998
Q gi|254781167|r 72 FGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAM 111 (322)
Q Consensus 72 ~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~ 111 (322)
+|+|.+-+++-.++|+-+ +++.+.++++.+
T Consensus 22 ~gad~iGfif~~~SpR~v----------~~~~a~~i~~~~ 51 (212)
T PRK01222 22 AGADAIGFVFYPKSPRYV----------TPEQAAELAAAL 51 (212)
T ss_pred CCCCEEEEEECCCCCCEE----------CHHHHHHHHHHC
T ss_conf 799989888038999462----------799999998627
No 209
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=95.20 E-value=0.11 Score=32.29 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=56.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCC
Q ss_conf 99982699899999887531045377--74425641367766688999985589999999998502-7906999861134
Q gi|254781167|r 51 ALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA-LSIPVTVKCRIGV 127 (322)
Q Consensus 51 ~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~-~~~pvsvK~RlG~ 127 (322)
++-|.+.|...+.+..+.+++.|.|. +|+==|.=+|.. ++| -++++++++. ++.|+-|-+=+
T Consensus 3 spSil~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNi---tfg----------~~~v~~ir~~~t~~~~DvHLMv-- 67 (220)
T PRK08883 3 APSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL---TFG----------APICKALRDYGITAPIDVHLMV-- 67 (220)
T ss_pred EHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCC----------HHHHHHHHHHCCCCCEEEEEEE--
T ss_conf 0776432999999999999976999899817789858865---669----------8999999965899875789983--
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56653220145543200012201210013566402577421227661046787666738875302577778998988874
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l 207 (322)
.+ -..+++.+.++|++.||+|.-+. + .. .+.+..+++.....-+..|-+ +..+....++
T Consensus 68 ---~~---P~~~i~~~~~aGad~I~~H~Ea~--------~-----~~-~~~i~~Ik~~g~k~GlalnP~-T~~~~l~~~l 126 (220)
T PRK08883 68 ---KP---VDRIIPDFAKAGASMITFHVEAS--------E-----HV-DRTLQLIKEHGCQAGVVLNPA-TPLAHLEYIM 126 (220)
T ss_pred ---CC---HHHHHHHHHHCCCCEEEECCCCC--------C-----CH-HHHHHHHHHCCCCEEEEECCC-CCHHHHHHHH
T ss_conf ---38---88889999975998899857765--------4-----99-999999998599668884799-9879999999
Q ss_pred HCCCCEEE
Q ss_conf 20352344
Q gi|254781167|r 208 PSVDGVMI 215 (322)
Q Consensus 208 ~~~dgvMi 215 (322)
+.+|.|++
T Consensus 127 ~~~D~VLv 134 (220)
T PRK08883 127 DKVDLILL 134 (220)
T ss_pred HHCCEEEE
T ss_conf 74697999
No 210
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.20 E-value=0.16 Score=30.98 Aligned_cols=132 Identities=13% Similarity=0.166 Sum_probs=83.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 699982699899999887531045377--744256413677666889999855899999999985027906999861134
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV 127 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~ 127 (322)
+++-|.+.|...+.+..+.+++ ++|. +|+==|.=+|.. .+| -.+++++++.+++|+-|-+=+
T Consensus 3 I~PSil~aD~~~L~~~i~~~~~-~~d~iHiDIMDG~FVPN~---tfg----------p~~v~~ir~~t~~p~DvHLMv-- 66 (227)
T PRK09722 3 ISPSLMCMDLLKFKEQIEFLDS-KADYFHIDIMDGHFVPNL---TLS----------PFFVSQVKKLASKPLDCHLMV-- 66 (227)
T ss_pred EEHHHHHCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCC---CCC----------HHHHHHHHHCCCCCEEEEEEE--
T ss_conf 7686763089999999999974-898899956168607854---518----------659999974489964789996--
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56653220145543200012201210013566402577421227661046787666738875302577778998988874
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l 207 (322)
.. -..+++.+.++|++.||+|.-+.. . .-...+..+++.....-+..|-+ ++.+....++
T Consensus 67 --~~----P~~~i~~~~~~gad~It~H~Ea~~------------~-~~~~~i~~Ik~~g~k~GlAlnP~-Tpi~~i~~~l 126 (227)
T PRK09722 67 --TR----PQDYIAQLADAGADFITLHPETIN------------G-QAFRLIDEIRRAGMKVGLVLNPE-TPVEAIKYYI 126 (227)
T ss_pred --CC----HHHHHHHHHHCCCCEEEECHHHCC------------C-CHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHH
T ss_conf --58----888899998549989995656505------------6-59999999998699722333899-9866887667
Q ss_pred HCCCCEEEEC
Q ss_conf 2035234412
Q gi|254781167|r 208 PSVDGVMIGR 217 (322)
Q Consensus 208 ~~~dgvMigR 217 (322)
+.+|.|++=-
T Consensus 127 ~~vD~VLvMs 136 (227)
T PRK09722 127 HLADKVTVMT 136 (227)
T ss_pred HHCCEEEEEE
T ss_conf 4379899998
No 211
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=95.08 E-value=0.021 Score=37.49 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=82.8
Q ss_pred ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCCCC
Q ss_conf 269989999988753104537774425641367766688999985589999999998502-7906999861134566532
Q gi|254781167|r 55 GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA-LSIPVTVKCRIGVDDQIPA 133 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~-~~~pvsvK~RlG~~~~~~~ 133 (322)
-|-.++++.++.++.+. |.|.|=|= |-+ -|-..+-+.++.+++. .+++|=+ .+
T Consensus 234 vg~r~~D~~R~~~L~~A-GvDv~viD--ssh-------------Ghs~~vl~~ik~~k~~Yp~~~iia----------GN 287 (476)
T TIGR01302 234 VGTREDDLERAEALVEA-GVDVIVID--SSH-------------GHSIYVLDSIKKIKKTYPDLDIIA----------GN 287 (476)
T ss_pred ECCCCCCHHHHHHHHHC-CCCEEEEE--CCC-------------CCCHHHHHHHHHHHHHCCEEEEEE----------CC
T ss_conf 46898618999999965-96589981--665-------------453789999999986388057994----------34
Q ss_pred CCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCCCCCCCHHHHHH
Q ss_conf 20145543200012201210------01356640257742122766104678766673--88753025777789989888
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKE--NPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~--~~~~~i~~NGdi~~~~~a~~ 205 (322)
.-+.+=++.|.+||||.|=| =|=||.--| .|...--.|+.+.+. -..+|+|+=|||+.-=|+.+
T Consensus 288 VaT~~~a~~LI~AgADg~rVGiGpGSICTTr~V~g--------VGvPQ~TAv~~Va~~A~~~Gi~VIADGGIr~SGDivK 359 (476)
T TIGR01302 288 VATAEQAKALIDAGADGLRVGIGPGSICTTRIVAG--------VGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVK 359 (476)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEE--------CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf 41178898898528887898368898110015651--------2762688999999999727990998377562558999
Q ss_pred HHH-CCCCEEEEC
Q ss_conf 742-035234412
Q gi|254781167|r 206 ILP-SVDGVMIGR 217 (322)
Q Consensus 206 ~l~-~~dgvMigR 217 (322)
-|. |+|.||+|-
T Consensus 360 AlAaGA~aVMlGs 372 (476)
T TIGR01302 360 ALAAGADAVMLGS 372 (476)
T ss_pred HHHHCCCEEHHCC
T ss_conf 9981677220234
No 212
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.97 E-value=0.067 Score=33.82 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=94.9
Q ss_pred HHHHCCCCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCC
Q ss_conf 983027457846999826-998999998875310453777442564136776668899--99855899999999985027
Q gi|254781167|r 39 NILGFSTQEKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGA--CLMLNPDIVGDCIAAMCKAL 115 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~Ga--aLl~~p~~~~~iv~~~~~~~ 115 (322)
++-..+.++.|+ |+.| .|| -.|++++..||+.+=+-- -+ +....|. .=+-..+.+...++.+.+++
T Consensus 9 ~fR~l~~~~~~~--~~pg~~d~----~sA~la~~aGF~al~~sg-~~----vA~slG~pD~~~~t~~e~~~~vrrI~~a~ 77 (289)
T COG2513 9 AFRALHASGDPL--VLPGAWDA----GSALLAERAGFKALYLSG-AG----VAASLGLPDLGITTLDEVLADARRITDAV 77 (289)
T ss_pred HHHHHHHCCCCE--EECCCCCH----HHHHHHHHCCCEEEEECC-HH----HHHHCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 999998379988--95687588----999999976974897254-88----89861798634165999999999998652
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 90699986113456653220145543200012201210013566-40257742122766104678766673887530257
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAI-LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~-~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
++||+|-+-.||.+ ..+.-..++.++++|+.++.|---..- .-|.-+.++-+....--+.|+..++..+++.++.|
T Consensus 78 ~lPv~vD~dtGfG~---~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ 154 (289)
T COG2513 78 DLPVLVDIDTGFGE---ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVII 154 (289)
T ss_pred CCCEEEECCCCCCC---HHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 78768865678873---889999999999758626645322550212788898767899999999999971558885999
Q ss_pred C--C---CCCHHHHHH----HHH-CCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7--7---789989888----742-03523441220001243999999871
Q gi|254781167|r 195 G--G---LEDMSQALK----ILP-SVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 195 G--d---i~~~~~a~~----~l~-~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
. | +...+++++ +.+ |+|++-. -++..+--|.++.+.+.
T Consensus 155 ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al~~~e~i~~f~~av~ 202 (289)
T COG2513 155 ARTDALLVEGLDDAIERAQAYVEAGADAIFP--EALTDLEEIRAFAEAVP 202 (289)
T ss_pred EEHHHHHHCCHHHHHHHHHHHHHCCCCEECC--CCCCCHHHHHHHHHHCC
T ss_conf 6148777524799999999999759768713--66799999999998468
No 213
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.92 E-value=0.27 Score=29.31 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCCEEEEEECCCHHHHH-HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 578469998269989999-9887531045377744256413677666889999855899999999985027906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLV-EAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~-~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
.++|+.+-|.+-.|.... +-..++.+.....+-+--|-|. .+. .+++ .+++|.+.+
T Consensus 54 tdkPFGVNi~~~~p~~~~~~~~~vi~e~kv~vv~~agG~P~-----------------~~~----~Lk~-aGikvi~~V- 110 (320)
T cd04743 54 GDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD-----------------QAR----ALEA-IGISTYLHV- 110 (320)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCH-----------------HHH----HHHH-CCCEEEEEC-
T ss_conf 59984455751388722578888886169989995688907-----------------879----9998-699799977-
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHH-----HHCCCCCCCCCCCCC
Q ss_conf 13456653220145543200012201210013566402577421227661046787-666-----738875302577778
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY-EIK-----KENPDLFIGLNGGLE 198 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~-~l~-----~~~~~~~i~~NGdi~ 198 (322)
. ...+++.++++|+|+|.+-|.-+ .|.-+ ...+- +-|.-+- .+. ....++||++-|+|.
T Consensus 111 ------~----Sv~lAk~~~~~GaDavIaEG~Ea--GGHiG--~~~Tm-~Lvpqvvdav~~~~~~~~~~~IPViaAGGI~ 175 (320)
T cd04743 111 ------P----SPGLLKQFLENGARKFIFEGREC--GGHVG--PRSSF-VLWESAIDALLAANGPDKAGKIHLLFAGGIH 175 (320)
T ss_pred ------C----CHHHHHHHHHCCCCEEEEECCCC--CCCCC--CCCHH-HHHHHHHHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf ------9----99999999984999999957457--67767--53013-4059898898603566556787489976745
Q ss_pred CHHHHHHHHH-CCC--------CEEEECC
Q ss_conf 9989888742-035--------2344122
Q gi|254781167|r 199 DMSQALKILP-SVD--------GVMIGRA 218 (322)
Q Consensus 199 ~~~~a~~~l~-~~d--------gvMigRg 218 (322)
|-.-+...+. ++. ||.+|..
T Consensus 176 DGRg~aaa~aLgA~~a~~g~~~GVqmGTr 204 (320)
T cd04743 176 DERSAAMVSALAAPLAERGAKVGVLMGTA 204 (320)
T ss_pred CCHHHHHHHHHCCCHHHCCCCCEEEEECH
T ss_conf 61899999983884223156222786044
No 214
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.86 E-value=0.38 Score=28.23 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHCC-CCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCC
Q ss_conf 69989999988753104-5377--744256413677666889999855899999999985027-9069998611345665
Q gi|254781167|r 56 GADISKLVEAAKIVEDF-GYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQI 131 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~-g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~ 131 (322)
|-+++.+.++.++.+.. ..+. ||+- +|.- ..+.+.++.+++.. +++| =.|
T Consensus 93 Gi~~~~~~~i~~l~~~~~~~~~i~iDvA----------hG~~-------~~~~~~i~~ik~~~~~~~i----iaG----- 146 (326)
T PRK05458 93 GVKDDEYDFIDQLAAEGLTPEYITIDIA----------HGHS-------DSVINMIKHIKKHLPETFV----IAG----- 146 (326)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECC----------CCCH-------HHHHHHHHHHHHHCCCCCE----EEC-----
T ss_conf 7998999999999856999777999805----------6442-------8999999999987899839----965-----
Q ss_pred CCCCHHHHHHHHCCCCCCHHHH------HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 3220145543200012201210------0135664025774212276610467876667388753025777789989888
Q gi|254781167|r 132 PAVALRNLVKSIKKSGVNGIWI------HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~iti------H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
+..+.+-++.+.++|++.|-| -|-|+..-|.+. |.+....+.++.+.. ..||++-|+|.+.-|+.+
T Consensus 147 -NVaT~e~~~~L~~~Gad~VkVGIG~Gs~CTTR~~tGvG~------p~~q~sai~~ca~~~-~~~iiaDGGi~~~GDi~K 218 (326)
T PRK05458 147 -NVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT------GGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAK 218 (326)
T ss_pred -CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC------CHHHHHHHHHHHHHH-CCCEEEECCCCCCCHHHH
T ss_conf -431899999999749999996777987520350135477------589999999999972-797797368587478999
Q ss_pred HH-HCCCCEEEECC
Q ss_conf 74-20352344122
Q gi|254781167|r 206 IL-PSVDGVMIGRA 218 (322)
Q Consensus 206 ~l-~~~dgvMigRg 218 (322)
.+ -|+|.||+|.-
T Consensus 219 Ala~GAd~VM~G~~ 232 (326)
T PRK05458 219 SIRFGATMVMIGSL 232 (326)
T ss_pred HHHCCCCEEEECCH
T ss_conf 98648988986712
No 215
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.84 E-value=0.082 Score=33.18 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH--HHHCCCC----CCCCCCCCCH------HHHHHHHHHHCCCCCCC--------CCC
Q ss_conf 14554320001220121001356--6402577----4212276610------46787666738875302--------577
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKA--ILKGLSP----KDNRKIPNLD------YDIVYEIKKENPDLFIG--------LNG 195 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~--~~~g~s~----~~~~~~~~~~------~~~i~~l~~~~~~~~i~--------~NG 195 (322)
+.+-++++.++|.|.|-||+=.. ..|.+|| |.+.|-|... .+.+.++++.... +++ ..|
T Consensus 144 f~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~~~~~-~v~vRis~~d~~~g 222 (337)
T PRK13523 144 FKQAAKRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDG-PLFVRISASDYHPD 222 (337)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCC
T ss_conf 99999999984999899813543589984792324895855888899988999999999986588-63999336555789
Q ss_pred CCCCHHHHHHH---HH--CCCCEEEECCCCC
Q ss_conf 77899898887---42--0352344122000
Q gi|254781167|r 196 GLEDMSQALKI---LP--SVDGVMIGRAAYK 221 (322)
Q Consensus 196 di~~~~~a~~~---l~--~~dgvMigRga~~ 221 (322)
++ +.+|.... ++ |+|-+-+..|.+.
T Consensus 223 G~-~~~d~~~~~~~l~~~GvD~i~vs~G~~~ 252 (337)
T PRK13523 223 GL-TVQDYVQYAKWMKEQGVDLIDVSSGAVV 252 (337)
T ss_pred CC-CHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 98-9899999999999749998995788554
No 216
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=94.80 E-value=0.064 Score=33.94 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 58999999999850279069998611345665322014554320001220121001356640257742122766104678
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIV 179 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i 179 (322)
+.+.+.+++....+ .+.-+=|-+. + ..|+-+.+ +.|++.|-|--|. ...-..|.+..
T Consensus 141 ~~~~l~el~~~A~~-LGm~~LVEVh-------~---~eEl~rAl-~~ga~iIGINnRd-----------L~tf~vdl~~t 197 (254)
T COG0134 141 DDEQLEELVDRAHE-LGMEVLVEVH-------N---EEELERAL-KLGAKIIGINNRD-----------LTTLEVDLETT 197 (254)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEEEC-------C---HHHHHHHH-HCCCCEEEEECCC-----------CCHHEECHHHH
T ss_conf 99999999999997-6992389978-------9---99999999-6799889983788-----------40210068899
Q ss_pred HHHHHHCCC-CCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 766673887-53025777789989888742-035234412200012439999998
Q gi|254781167|r 180 YEIKKENPD-LFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 180 ~~l~~~~~~-~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~ 232 (322)
.++....|. ..++.-.||.+++|+.++.. |+||+.||-+.+.+|-.-..+++.
T Consensus 198 ~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 198 EKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 9988448777589961798999999999974899899638885699989999986
No 217
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=94.79 E-value=0.069 Score=33.71 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf 610467876667388753025777789989888742-035234412200012439
Q gi|254781167|r 173 NLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAML 226 (322)
Q Consensus 173 ~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if 226 (322)
|..-+.|+.+++.+.+.+++.-|||+|.++|.++.+ |+|-|-+|-.++.+|--+
T Consensus 170 pv~~e~V~~v~~~l~~~~LivGGGIrs~e~a~~~~~aGAD~IVvGn~ie~d~~~~ 224 (229)
T PRK04169 170 PVPPEMVKAVKKALTDTPLIVGGGIRSPEQAREMAKAGADTIVVGTIIEEDIEKA 224 (229)
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEECCHHHH
T ss_conf 7899999999973789878992896999999999976999999886201079999
No 218
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.73 E-value=0.29 Score=29.14 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=83.9
Q ss_pred CCCCEEEEEECCCHHHH-HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 57846999826998999-99887531045377744256413677666889999855---899999999985027906999
Q gi|254781167|r 46 QEKPLALQIGGADISKL-VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLN---PDIVGDCIAAMCKALSIPVTV 121 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~-~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~---p~~~~~iv~~~~~~~~~pvsv 121 (322)
.+.|+..=++++||-.- -.--+-+.+.||.+| .|+ |.--...+.+...|=+. -++=.++++..++ .++.-+
T Consensus 80 ~~tPViaGv~~tDP~~~~~~~L~~l~~~GfsGV-~Nf--PTvglidG~fR~~LEetGmgy~~EVEmIr~A~~-~dl~T~- 154 (268)
T pfam09370 80 KHTPVLAGVCGTDPFRDMDRFLDELKEMGFAGV-QNF--PTVGLIDGEFRQNLEETGMGYDLEVEMIRLAHE-KGLLTT- 154 (268)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCE-EEC--CCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCC-
T ss_conf 588758761588974529999999997197744-438--822033518887788808867999999999997-798333-
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHH----HHHHHCCCCCCCC-C
Q ss_conf 861134566532201455432000122012100135664025774212276610--46787----6667388753025-7
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLD--YDIVY----EIKKENPDLFIGL-N 194 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~--~~~i~----~l~~~~~~~~i~~-N 194 (322)
.+....+=++.+.++|+|.|..|.=.. .+|..+.+. ...++ -+.+. ..++..|++.+.. -
T Consensus 155 ----------~yvf~~e~a~~Ma~AGaDiIv~H~GlT-~gG~iG~~~--a~sl~~a~~~~~~i~~aa~~v~~diIvLchG 221 (268)
T pfam09370 155 ----------PYVFNVEEARAMAEAGADIIVAHMGLT-TGGTIGADT--ALSLDDCVELINAIARAARSVNPDVIVLCHG 221 (268)
T ss_pred ----------CEECCHHHHHHHHHCCCCEEEECCCCC-CCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf ----------132689999999974998999767767-776746777--6789999999999999999859986999517
Q ss_pred CCCCCHHHHHHHHH---CCCCEEEEC
Q ss_conf 77789989888742---035234412
Q gi|254781167|r 195 GGLEDMSQALKILP---SVDGVMIGR 217 (322)
Q Consensus 195 Gdi~~~~~a~~~l~---~~dgvMigR 217 (322)
|-|.+++|+..+++ +|+|+-=|-
T Consensus 222 GpI~~P~Da~~vl~~t~~~~Gf~GaS 247 (268)
T pfam09370 222 GPIATPEDAQYVLDRTPGCHGFYGAS 247 (268)
T ss_pred CCCCCHHHHHHHHHCCCCCCEEECCC
T ss_conf 88899899999997397776676330
No 219
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.71 E-value=0.056 Score=34.41 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=89.4
Q ss_pred EEECCCHHHHHHHHHHHH-C-CCCCE-EEECCCCCHHHHHHHHHH--HHHH----HHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 982699899999887531-0-45377-744256413677666889--9998----5589999999998502790699986
Q gi|254781167|r 53 QIGGADISKLVEAAKIVE-D-FGYNE-INLNVGCPSARVHEGSFG--ACLM----LNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~-~-~g~~~-idlN~GCP~~~v~~~g~G--aaLl----~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
+.|+++.+.+.++.+... + .--|. || |..--...-+| +-|| -+++.+.++++...+ .+.-+-|-+
T Consensus 55 ~~F~Gs~~~L~~v~~~~~~PiLrKDFIid-----~~QI~ea~~~GAdaiLLI~~~L~~~~l~~l~~~a~~-lgl~~LvEv 128 (217)
T cd00331 55 KYFQGSLEDLRAVREAVSLPVLRKDFIID-----PYQIYEARAAGADAVLLIVAALDDEQLKELYELARE-LGMEVLVEV 128 (217)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEECCCCCC-----HHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHH-HCCEEEEEE
T ss_conf 77798899999999847998674232176-----999999998199878798885499999999999999-498279885
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHH
Q ss_conf 1134566532201455432000122012100135664025774212276610467876667388-753025777789989
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQ 202 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~ 202 (322)
. +.+ |+ +++.+.|++.|-|-.|. ..+-..|.+...++.+..| +..++.-+||.+.+|
T Consensus 129 h-------~~~---El-~~a~~~~a~iIGINnRd-----------L~t~~vd~~~~~~L~~~ip~~~~~IsESGI~~~~d 186 (217)
T cd00331 129 H-------DEE---EL-ERALALGAKIIGINNRD-----------LKTFEVDLNTTERLAPLIPKDVILVSESGISTPED 186 (217)
T ss_pred C-------CHH---HH-HHHHHCCCCEEEECCCC-----------CHHCEECHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 8-------999---99-99995799878421677-----------12303478999999964898988998279999999
Q ss_pred HHHHHH-CCCCEEEECCCCCHHHHHH
Q ss_conf 888742-0352344122000124399
Q gi|254781167|r 203 ALKILP-SVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 203 a~~~l~-~~dgvMigRga~~~P~if~ 227 (322)
+..+.. |+|||+||.+.+..|-.-.
T Consensus 187 i~~l~~~G~d~~LIG~sLm~~~~p~~ 212 (217)
T cd00331 187 VKRLAEAGADAVLIGESLMRAPDPGA 212 (217)
T ss_pred HHHHHHCCCCEEEECHHHHCCCCHHH
T ss_conf 99999879999998978867999899
No 220
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.60 E-value=0.12 Score=31.89 Aligned_cols=165 Identities=16% Similarity=0.100 Sum_probs=86.3
Q ss_pred EEECCCHHH-HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHCCC--CEEEEEEE
Q ss_conf 982699899-99988753104537774425641367766688-9-----999855899999999985027--90699986
Q gi|254781167|r 53 QIGGADISK-LVEAAKIVEDFGYNEINLNVGCPSARVHEGSF-G-----ACLMLNPDIVGDCIAAMCKAL--SIPVTVKC 123 (322)
Q Consensus 53 Ql~g~~p~~-~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~-G-----aaLl~~p~~~~~iv~~~~~~~--~~pvsvK~ 123 (322)
+++-.+-|. +++||....- .-.+--.-.||.-.|.+... | -++.+|+++..++++...++- .+-|||-+
T Consensus 97 ~l~hp~gE~~~AraA~~~g~--~~~lSt~ss~slEeva~~~~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~aLvlTVD~ 174 (383)
T cd03332 97 ELFHPDAELATARAAAELGV--PYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDT 174 (383)
T ss_pred HCCCCCHHHHHHHHHHHHCC--CEECCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 41489778999999998358--6220577678899999866899639999515888999999999997389779992268
Q ss_pred E-CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC----C---CC----------CCCCCCCCCHHHHHHHHHHH
Q ss_conf 1-13456653220145543200012201210013566402----5---77----------42122766104678766673
Q gi|254781167|r 124 R-IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKG----L---SP----------KDNRKIPNLDYDIVYEIKKE 185 (322)
Q Consensus 124 R-lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g----~---s~----------~~~~~~~~~~~~~i~~l~~~ 185 (322)
- .|+.+.+ ..+ .|.+.....+.....-|+|-...-. . .+ -.....+..+|+.+..+++.
T Consensus 175 Pv~G~Rerd-~r~--g~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~ 251 (383)
T cd03332 175 WSLGWRPRD-LDL--GYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREW 251 (383)
T ss_pred CCCCCCHHH-HHC--CCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 666876545-532--68864330367775478899997325677654567750145999998537888998999999987
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE----ECCCCCHHH
Q ss_conf 88753025777789989888742-0352344----122000124
Q gi|254781167|r 186 NPDLFIGLNGGLEDMSQALKILP-SVDGVMI----GRAAYKNSA 224 (322)
Q Consensus 186 ~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi----gRga~~~P~ 224 (322)
. ..|++ -=||.+.+||....+ |+|||.| ||..=+-|.
T Consensus 252 w-~~pli-lKGI~~~eDA~~A~~~G~dgIiVSNHGGRQLD~apa 293 (383)
T cd03332 252 T-DLPIV-LKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIA 293 (383)
T ss_pred C-CCCEE-ECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 6-99853-235689999999997599889980786344678832
No 221
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=94.59 E-value=0.14 Score=31.44 Aligned_cols=89 Identities=22% Similarity=0.412 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH--HHHHCCCCCC----CCCCCCCH------HHHHHHHHHHC-CCCCCCC--------C
Q ss_conf 1455432000122012100135--6640257742----12276610------46787666738-8753025--------7
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARK--AILKGLSPKD----NRKIPNLD------YDIVYEIKKEN-PDLFIGL--------N 194 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt--~~~~g~s~~~----~~~~~~~~------~~~i~~l~~~~-~~~~i~~--------N 194 (322)
+.+-++.+.++|.|.|-||+=. -..|.+||.- +.|-|... .++|.++++.+ ++.+|.. +
T Consensus 143 f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i~~Ris~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 99999999973998898445777469984698558996767988899989999999999998198776158867623568
Q ss_pred CCCCCHHHHHHH---HH--C-CCCEEEECCCCCHHHH
Q ss_conf 777899898887---42--0-3523441220001243
Q gi|254781167|r 195 GGLEDMSQALKI---LP--S-VDGVMIGRAAYKNSAM 225 (322)
Q Consensus 195 Gdi~~~~~a~~~---l~--~-~dgvMigRga~~~P~i 225 (322)
|+ .+.+|+.+. ++ | +|-+=|..|.+.+.+.
T Consensus 223 ~g-~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~ 258 (343)
T cd04734 223 GG-LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLG 258 (343)
T ss_pred CC-CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf 98-9989999999999966997689965675433222
No 222
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=94.50 E-value=0.041 Score=35.37 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=52.3
Q ss_pred CHHHHHHHHCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CC
Q ss_conf 0145543200012201210---0135664025774212276610467876667388753025777789989888742-03
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWI---HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SV 210 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~iti---H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~ 210 (322)
...+-++.+.++|+|.|.| ||-+. --.+.++.+|+.+|+++|+ -|+|.+.+-+....+ |+
T Consensus 227 d~~eR~~aLv~AGvDvlvIDtAHGhS~---------------~vi~~vk~iK~~~p~~~vi-aGNvaT~~~a~~Li~aGa 290 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVIDTAHGHQE---------------KMLEAIRAVRALDPGVPLV-AGNVVTAEGTRDLVEAGA 290 (479)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCHH---------------HHHHHHHHHHHHCCCCCEE-EEEHHHHHHHHHHHHCCC
T ss_conf 589999999976998999754576648---------------9999999998408988578-743202999999997399
Q ss_pred CCEEEECC
Q ss_conf 52344122
Q gi|254781167|r 211 DGVMIGRA 218 (322)
Q Consensus 211 dgvMigRg 218 (322)
|+|-+|=|
T Consensus 291 d~ikvGiG 298 (479)
T PRK07807 291 DIVKVGVG 298 (479)
T ss_pred CEEECCCC
T ss_conf 97631555
No 223
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=94.43 E-value=0.48 Score=27.53 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=90.9
Q ss_pred HHHHCCCCC-CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 983027457-84699982699899999887531045377744256413677666889999855899999999985027--
Q gi|254781167|r 39 NILGFSTQE-KPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-- 115 (322)
Q Consensus 39 ~~~~~~~~e-~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-- 115 (322)
++|.-...+ -|+..-..|.+++++.+.++...+.||+.+-+.. .++++++++++
T Consensus 106 ~LLGG~~r~~i~~y~~~~~~~~~e~~~~a~~~~~~Gf~~~K~k~-----------------------~~~i~avR~~~G~ 162 (361)
T cd03322 106 QLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGF 162 (361)
T ss_pred HHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECH-----------------------HHHHHHHHHHHCC
T ss_conf 98189778747899963889969999999988865988787452-----------------------9999999997299
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 90699986113456653220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
++++-+-.--+|+ ......+++.+++.++.++- ...++-|++..+++++.. .+||.+.=
T Consensus 163 ~~~l~vDan~~~~----~~~Ai~~~~~l~~~~l~w~E----------------eP~~~~d~~~~~~l~~~~-~iPIa~gE 221 (361)
T cd03322 163 EFHLLHDVHHRLT----PNQAARFGKDVEPYRLFWME----------------DPTPAENQEAFRLIRQHT-ATPLAVGE 221 (361)
T ss_pred CCEEECCCCCCCC----HHHHHHHHHHHHHHHHHCCC----------------CCCCCCCHHHHHHHHHHC-CCCEEECC
T ss_conf 9708512556899----99999999998742021021----------------798865889999999746-99888278
Q ss_pred CCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 7789989888742--0352344122000124399999
Q gi|254781167|r 196 GLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 196 di~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~ 230 (322)
.+.+..++..+++ .+|-+++-=.-.+--.=+.+|.
T Consensus 222 ~~~~~~~~~~~i~~~a~divq~d~~~~GGit~~~kia 258 (361)
T cd03322 222 VFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIA 258 (361)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHH
T ss_conf 7689999999998276562055666048799999999
No 224
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.43 E-value=0.14 Score=31.47 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC--CHHHH---HHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5899999999985027906999861134566532201455432000122--01210---013566402577421227661
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV--NGIWI---HARKAILKGLSPKDNRKIPNL 174 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~--~~iti---H~Rt~~~~g~s~~~~~~~~~~ 174 (322)
+++...+.++.+.+. +. .+-+.+|.+++ . .+.++.+.++|+ +.|+| ||-.. .
T Consensus 70 ~~e~~~~~~~~~~~~-~~--~~~iSvGi~~~-~----~~~i~~l~~~~~~~~~i~iDvAhG~~~---------------~ 126 (326)
T PRK05458 70 DPEARIPFIKDMHER-GL--IASISVGVKDD-E----YDFIDQLAAEGLTPEYITIDIAHGHSD---------------S 126 (326)
T ss_pred CHHHHHHHHHHCCCC-CC--EEEEEECCCHH-H----HHHHHHHHHCCCCCCEEEEECCCCCHH---------------H
T ss_conf 889999999852323-72--79999479989-9----999999985699977799980564428---------------9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 0467876667388753025777789989888742-0352344122
Q gi|254781167|r 175 DYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 175 ~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
-.+.++.+++.+|+.+|+ -|+|-|++-+..+++ |+|+|-||=|
T Consensus 127 ~~~~i~~ik~~~~~~~ii-aGNVaT~e~~~~L~~~Gad~VkVGIG 170 (326)
T PRK05458 127 VINMIKHIKKHLPETFVI-AGNVGTPEAVRELENAGADATKVGIG 170 (326)
T ss_pred HHHHHHHHHHHCCCCCEE-ECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999878998399-65431899999999749999996777
No 225
>PRK13120 consensus
Probab=94.39 E-value=0.49 Score=27.46 Aligned_cols=167 Identities=20% Similarity=0.269 Sum_probs=94.4
Q ss_pred CCEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECCCCCHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHC-CCCEE
Q ss_conf 846999826998--999998875310453777442564136----776668899998--558999999999850-27906
Q gi|254781167|r 48 KPLALQIGGADI--SKLVEAAKIVEDFGYNEINLNVGCPSA----RVHEGSFGACLM--LNPDIVGDCIAAMCK-ALSIP 118 (322)
Q Consensus 48 ~p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~GCP~~----~v~~~g~GaaLl--~~p~~~~~iv~~~~~-~~~~p 118 (322)
.-++.=|.+++| +...++.+.+.+.|.|.|.|-+=-.-| .|.....--||- -+.+.+.++++.+++ ...+|
T Consensus 21 ~alI~yitaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~vl~~v~~~r~~~~~~P 100 (285)
T PRK13120 21 AALIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRDDSVTP 100 (285)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 22887857858998999999999997699999978987874566899999999999769984469999999873489888
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-------------------------------HHHHHH--------
Q ss_conf 99986113456653220145543200012201210-------------------------------013566--------
Q gi|254781167|r 119 VTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-------------------------------HARKAI-------- 159 (322)
Q Consensus 119 vsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-------------------------------H~Rt~~-------- 159 (322)
|-+= |+-+.--.--...|++.+.++|++.+.| .-|-..
T Consensus 101 ivlM---~Y~Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~EE~~~~~~~~~~~gi~~I~LiaPtT~~eRi~~I~~~s~GF 177 (285)
T PRK13120 101 VVLM---GYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEAGVAPIFLLAPTSTEARIEAIGRVARGY 177 (285)
T ss_pred EEEE---EHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8986---1054999987999999999839877964799979999999999966996589957999899999999508981
Q ss_pred -----HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf -----402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 -----LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 -----~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
..|..+.++.... ---+.+.++|+. .++|+..--||.+.+++..+...+|||-||-+.
T Consensus 178 vY~VS~~GVTG~~~~~~~-~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~ADGvIVGSAi 240 (285)
T PRK13120 178 VYYVSLKGVTGAGSLDTD-DVARKLALIRRH-VHIPVGVGFGIRDAASAQRIAAHADAVVIGSKL 240 (285)
T ss_pred EEEEECCCCCCCCCCCHH-HHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 899865654688755668-899999999972-699759996259899999997029999987899
No 226
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.31 E-value=0.16 Score=31.03 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=80.0
Q ss_pred EEECCCHHH-HHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCC--CEEEEE
Q ss_conf 982699899-999887531045-377744256413677666889-------999855899999999985027--906999
Q gi|254781167|r 53 QIGGADISK-LVEAAKIVEDFG-YNEINLNVGCPSARVHEGSFG-------ACLMLNPDIVGDCIAAMCKAL--SIPVTV 121 (322)
Q Consensus 53 Ql~g~~p~~-~~~aa~~~~~~g-~~~idlN~GCP~~~v~~~g~G-------aaLl~~p~~~~~iv~~~~~~~--~~pvsv 121 (322)
+++-.+-|. +++||+ ..| .-.+--.-.||.-.|.+...+ -++.+|++...++++...++- .+-|||
T Consensus 76 ~l~hp~gE~a~AraA~---~~gi~~~lSt~ss~slEdVa~a~~~~~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTv 152 (344)
T cd02922 76 KLAHPDGELNLARAAG---KHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTV 152 (344)
T ss_pred HHCCCCHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 4328845699999999---7488657405777888999986568986699982477679999999999986998899956
Q ss_pred EE----------ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 86----------113456653220145543200012201210013566402577-4212276610467876667388753
Q gi|254781167|r 122 KC----------RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSP-KDNRKIPNLDYDIVYEIKKENPDLF 190 (322)
Q Consensus 122 K~----------RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~-~~~~~~~~~~~~~i~~l~~~~~~~~ 190 (322)
-+ |.|+..... ... ..+.-.....+.+. ......+...|+.+..+++.. ..|
T Consensus 153 D~p~~G~R~rd~r~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~tw~di~~lr~~~-~~p 215 (344)
T cd02922 153 DAPVLGKRERDERLKAEEAVS-DGP---------------AGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KLP 215 (344)
T ss_pred CCCCCCCCHHHHHCCCCCCCC-CCC---------------CCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHC-CCC
T ss_conf 788877522666507777887-665---------------433334466316677775048889999999999866-997
Q ss_pred CCCCCCCCCHHHHHHHHH-CCCCEEE----ECCCCCHHH
Q ss_conf 025777789989888742-0352344----122000124
Q gi|254781167|r 191 IGLNGGLEDMSQALKILP-SVDGVMI----GRAAYKNSA 224 (322)
Q Consensus 191 i~~NGdi~~~~~a~~~l~-~~dgvMi----gRga~~~P~ 224 (322)
++. =+|.+.+||....+ |+|||.| ||..=+-|.
T Consensus 216 liv-KGIl~~~DA~~A~~~G~dgIiVSNHGGRqLD~~~~ 253 (344)
T cd02922 216 IVL-KGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPA 253 (344)
T ss_pred EEE-CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 010-02577999999996599889971886212578831
No 227
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.09 E-value=0.11 Score=32.35 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=90.8
Q ss_pred EEECCCHHHHHHHHHHHH-C-CCCCE-EEECCCCCHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 982699899999887531-0-45377-74425641367766688999--98----5589999999998502790699986
Q gi|254781167|r 53 QIGGADISKLVEAAKIVE-D-FGYNE-INLNVGCPSARVHEGSFGAC--LM----LNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 53 Ql~g~~p~~~~~aa~~~~-~-~g~~~-idlN~GCP~~~v~~~g~Gaa--Ll----~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.-|+++.+.+.++.+.+. + +--|. || |..-....-+||. || -+++.+.++++.... .+.-+-|-+
T Consensus 85 ~~F~Gs~~~L~~v~~~v~lPiLrKDFIid-----~~QI~ea~~~GADaILLIaa~L~~~~l~~l~~~A~~-lGle~LvEv 158 (247)
T PRK13957 85 SYFGGSLEDLKSVSSELKIPVLRKDFILD-----EIQIREARAFGASAILLIVRILTPSQIKSFLKHASS-LGMDVLVEV 158 (247)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEEECC-----HHHHHHHHHCCCCEEHHHHHCCCHHHHHHHHHHHHH-HCCEEEEEE
T ss_conf 66799899999999857998474112064-----999999997399851268850899999999999998-388156255
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHH
Q ss_conf 11345665322014554320001220121001356640257742122766104678766673887-53025777789989
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQ 202 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~ 202 (322)
. +. .|+ .++.++|++.|-|-.|. ..+...|.+...++....|. ..++.-.||.+.+|
T Consensus 159 H-------~~---~El-~~al~~~~~iIGINNRn-----------L~tf~vd~~~~~~l~~~ip~~~~~VsESGI~~~~d 216 (247)
T PRK13957 159 H-------TE---DEA-KLALDCGAEIIGINTRD-----------LDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSD 216 (247)
T ss_pred C-------CH---HHH-HHHHHCCCCEEEEECCC-----------CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 8-------99---999-99984899889874577-----------32146398899999843899987996789999999
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 888742035234412200012439999998
Q gi|254781167|r 203 ALKILPSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 203 a~~~l~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
+..+..++|||+||-+.+..|-+=..+...
T Consensus 217 i~~l~~~~da~LIGeslMk~~d~~~a~~~L 246 (247)
T PRK13957 217 LDKFRKLVDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred HHHHHHHCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 999997399999886775699999999975
No 228
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.08 E-value=0.24 Score=29.69 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=89.3
Q ss_pred ECCCHHHHHHHHHHHHC-CCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 26998999998875310-4537774425-641367766688999985589999999998502790699986113456653
Q gi|254781167|r 55 GGADISKLVEAAKIVED-FGYNEINLNV-GCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~-~g~~~idlN~-GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
+..+.++..+.|++..+ .+-++|-|-. |-| -.|+.||....+-.+.+++- +.-|-.=| . +
T Consensus 71 Gc~ta~EAvr~A~laRE~~~t~~IKLEVi~D~----------~~LlPD~~eTl~Aae~Lv~~-GF~VlpY~-----~-~- 132 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYC-----T-D- 132 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC----------CCCCCCHHHHHHHHHHHHHC-CCEEEEEC-----C-C-
T ss_conf 11679999999999999848986999981797----------67798868999999999988-99897867-----8-8-
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
-+-++++++++||..|---|-- +=.| .|-.+.+.++.+.+.. ++|+|.-.||-++.||...++ |||
T Consensus 133 ---D~v~akrLe~~Gc~avMPlgsP-IGSg--------~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~Aa~aMElG~d 199 (248)
T cd04728 133 ---DPVLAKRLEDAGCAAVMPLGSP-IGSG--------QGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGAD 199 (248)
T ss_pred ---CHHHHHHHHHCCCEEEEECCCC-CCCC--------CCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf ---9999999997495345204564-3479--------8879999999999847-9988984799975678999872655
Q ss_pred CEEEECCC
Q ss_conf 23441220
Q gi|254781167|r 212 GVMIGRAA 219 (322)
Q Consensus 212 gvMigRga 219 (322)
||++-.++
T Consensus 200 aVL~NTAI 207 (248)
T cd04728 200 AVLLNTAI 207 (248)
T ss_pred EEEHHHHH
T ss_conf 33454687
No 229
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.02 E-value=0.57 Score=26.94 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=99.2
Q ss_pred HHHHC-CCCCCCEEE-EEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 98302-745784699-982699899999887531045377744256413677666889999855899999999985027-
Q gi|254781167|r 39 NILGF-STQEKPLAL-QIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL- 115 (322)
Q Consensus 39 ~~~~~-~~~e~p~~~-Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~- 115 (322)
++|.- ..+.-|+-. -+...+|+.+.+.++.+.+.||..+-+.+|+... ....++-+| .+.++++++++
T Consensus 99 ~LLGG~~r~~i~~Yas~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~p~-----~~~~~~~~d----~~~v~avr~~~G 169 (341)
T cd03327 99 KLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPS-----DGHAGLRKN----VELVRAIREAVG 169 (341)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCHHHHHHH----HHHHHHHHHHHC
T ss_conf 99379876760267852789999999999999998399879971577887-----504459999----999999999839
Q ss_pred -CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf -9069998611345665322014554320001220121001356640257742122766104678766673887530257
Q gi|254781167|r 116 -SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 116 -~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
++.+.|-.--+|+ ......+++.+++.++.++-= ..++-|++..++|++.. .+||...
T Consensus 170 ~~~~l~vD~n~~~~----~~~A~~~~~~l~~~~~~w~Ee----------------P~~~~d~~~~~~l~~~~-~ipIa~g 228 (341)
T cd03327 170 YDVDLMLDCYMSWN----LNYAIKMARALEKYELRWIEE----------------PLIPDDIEGYAELKKAT-GIPISTG 228 (341)
T ss_pred CCCEEECCCCCCCC----HHHHHHHHHHHHHCCCEEEEC----------------CCCCCCHHHHHHHHHCC-CCCEEEC
T ss_conf 99669703555899----999999977641046013646----------------89967899999987309-9989809
Q ss_pred CCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 77789989888742--03523441220001243999999
Q gi|254781167|r 195 GGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 195 Gdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~~ 231 (322)
=.+.+..++..+++ .+|.+++-=.-.+=..=+.++.+
T Consensus 229 E~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~ 267 (341)
T cd03327 229 EHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAA 267 (341)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCEECCHHHHHHHHH
T ss_conf 888899999999986188979824353186999999999
No 230
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.00 E-value=0.58 Score=26.91 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83027457846999826998999998875310453777442564136776668899998558999999999850279069
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
++.-...+-|...-+..+.++.+.+-++-..+.||+.+-+-.|=|.. +.-.+.+++++++++-
T Consensus 123 LLGg~~~~v~~~~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvG~~~~---------------~~D~~~v~~ir~~~g~-- 185 (355)
T cd03321 123 LLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTA---------------DEDLAVVRSIRQAVGD-- 185 (355)
T ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH---------------HHHHHHHHHHHHHHCC--
T ss_conf 90899875025623678999999999999997599989997999998---------------9999999999997199--
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99861134566532201455432000122012100135664025774212276610467876667388753025777789
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLED 199 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~ 199 (322)
.+++|+-.+..-+.....++++.+++.|+.++- ...++-|++-.+++++.. .+||.+.=.+.+
T Consensus 186 ~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~E----------------qP~~~~d~~~~~~l~~~~-~~pI~~~E~~~~ 248 (355)
T cd03321 186 GVGLMVDYNQSLTVPEAIERGQALDQEGLTWIE----------------EPTLQHDYEGHARIASAL-RTPVQMGENWLG 248 (355)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE----------------CCCCCCCHHHHHHHHHCC-CCCEEECCCCCC
T ss_conf 965973575676889999999975230577553----------------789988999999998548-999993788899
Q ss_pred HHHHHHHHH--CCCCEEEE
Q ss_conf 989888742--03523441
Q gi|254781167|r 200 MSQALKILP--SVDGVMIG 216 (322)
Q Consensus 200 ~~~a~~~l~--~~dgvMig 216 (322)
..++..+++ .+|.+.+-
T Consensus 249 ~~~~~~~i~~~a~d~~~~d 267 (355)
T cd03321 249 PEEMFKALSAGACDLVMPD 267 (355)
T ss_pred HHHHHHHHHCCCCCCCCCC
T ss_conf 9999999984999610367
No 231
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=94.00 E-value=0.41 Score=28.04 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=77.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECC
Q ss_conf 699982699899999887531045377--74425641367766688999985589999999998502-790699986113
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA-LSIPVTVKCRIG 126 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~-~~~pvsvK~RlG 126 (322)
+++-|...|...+.+..+.+++.|.|. ||+==|-=+|.. .+| | ++++++++. +++|+-|-+=+
T Consensus 6 IspSil~ad~~~L~~ei~~l~~~g~d~iHiDImDG~FVpN~---t~g------~----~~i~~ir~~~~~~plDvHLMv- 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL---TIG------P----MVCQALRKHGITAPIDVHLMV- 71 (223)
T ss_pred EEHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCC------H----HHHHHHHHHCCCCCEEEEEEE-
T ss_conf 86866515999999999999976999899827679707755---709------5----999999961899753778983-
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45665322014554320001220121001356640257742122766104678766673887530257777899898887
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~ 206 (322)
.+ -..+++.+.++|++.|++|.-+. . .. .+.+..+++....+-+..|-+ ++.+....+
T Consensus 72 ----~~---P~~~i~~~~~aGad~i~~H~Ea~--------~-----~~-~~~i~~ik~~g~k~GlalnP~-T~~~~l~~~ 129 (223)
T PRK08745 72 ----EP---VDRIVPDFADAGATTISFHPEAS--------R-----HV-HRTIQLIKSHGCQAGLVLNPA-TPVDILDWV 129 (223)
T ss_pred ----CC---HHHHHHHHHHCCCCEEEEEECCC--------C-----CH-HHHHHHHHHCCCCEEEEECCC-CCHHHHHHH
T ss_conf ----39---89999999973997899960644--------2-----99-999999998398446774699-987999998
Q ss_pred HHCCCCEEEEC
Q ss_conf 42035234412
Q gi|254781167|r 207 LPSVDGVMIGR 217 (322)
Q Consensus 207 l~~~dgvMigR 217 (322)
++.+|.|+|=-
T Consensus 130 l~~~D~VliMt 140 (223)
T PRK08745 130 LPELDLVLVMS 140 (223)
T ss_pred HHHCCEEEEEE
T ss_conf 86479899987
No 232
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.97 E-value=0.22 Score=30.00 Aligned_cols=134 Identities=20% Similarity=0.264 Sum_probs=87.9
Q ss_pred ECCCHHHHHHHHHHHHC-CCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 26998999998875310-4537774425-641367766688999985589999999998502790699986113456653
Q gi|254781167|r 55 GGADISKLVEAAKIVED-FGYNEINLNV-GCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~-~g~~~idlN~-GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
+..+.++..+.|++..+ .+-++|-|-. |=| -.|+.||....+-.+.+++- +..|-.=| . ++
T Consensus 72 Gc~ta~EAVr~A~laRE~~~tnwIKLEVi~D~----------~~LlPD~~etl~Aae~Lv~e-GF~VlpY~-----~-~D 134 (256)
T PRK00208 72 GCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFVVLPYC-----T-DD 134 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC----------CCCCCCHHHHHHHHHHHHHC-CCEEEEEC-----C-CC
T ss_conf 32679999999999999848986999981797----------67798868999999999988-99897867-----8-89
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
+-++++++++||..|---|-- +=.| .|-.+...++.+.+.. ++|+|.-.||-++.||...++ |||
T Consensus 135 ----~v~akrLe~~Gc~avMPlgsP-IGSg--------~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~Aa~AMElG~D 200 (256)
T PRK00208 135 ----PVLAKRLEEAGCAAVMPLGAP-IGSG--------LGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAMELGAD 200 (256)
T ss_pred ----HHHHHHHHHCCCEEEEECCCC-CCCC--------CCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf ----899999997495345204564-3479--------8879999999999867-9988985788976678999862554
Q ss_pred CEEEECCC
Q ss_conf 23441220
Q gi|254781167|r 212 GVMIGRAA 219 (322)
Q Consensus 212 gvMigRga 219 (322)
||++-.++
T Consensus 201 aVL~NTAI 208 (256)
T PRK00208 201 AVLLNTAI 208 (256)
T ss_pred EEEHHHHH
T ss_conf 32355687
No 233
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=93.97 E-value=0.26 Score=29.43 Aligned_cols=134 Identities=20% Similarity=0.260 Sum_probs=89.0
Q ss_pred ECCCHHHHHHHHHHHHC-CCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 26998999998875310-4537774425-641367766688999985589999999998502790699986113456653
Q gi|254781167|r 55 GGADISKLVEAAKIVED-FGYNEINLNV-GCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~-~g~~~idlN~-GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
+..+.++..+.|++..+ .+-++|-|-. |-| -.|+.||....+-.+.+++- +..|-.=| . ++
T Consensus 70 Gc~tA~EAVr~A~laRE~~~t~wIKLEVi~D~----------~~LlPD~~etl~Aae~Lv~e-GF~VlpY~-----~-~D 132 (246)
T pfam05690 70 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDS----------KTLLPDPIETLKAAEILVKE-GFTVLPYT-----T-DD 132 (246)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC----------CCCCCCHHHHHHHHHHHHHC-CCEEEEEC-----C-CC
T ss_conf 11889999999999999709974899982698----------87798878999999999978-99898861-----7-99
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
+-+++.++++||..|---|-- +=.| .|-.+...++.+.+.. ++|+|.-.||-++.||-..++ |||
T Consensus 133 ----~v~akrLed~Gc~avMPlgsP-IGSg--------~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~Aa~aMElG~D 198 (246)
T pfam05690 133 ----PVLARRLEEAGCAAVMPLGAP-IGSG--------LGLRNPENLRIIIEEA-DVPVIVDAGIGTPSDAAQAMELGAD 198 (246)
T ss_pred ----HHHHHHHHHCCCEEEEECCCC-CCCC--------CCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf ----899999987598498622440-1368--------8868999999999967-9988984898967889999974567
Q ss_pred CEEEECCC
Q ss_conf 23441220
Q gi|254781167|r 212 GVMIGRAA 219 (322)
Q Consensus 212 gvMigRga 219 (322)
||++-.++
T Consensus 199 aVLvNTAI 206 (246)
T pfam05690 199 AVLLNTAI 206 (246)
T ss_pred EEEHHHHH
T ss_conf 77730677
No 234
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.94 E-value=0.14 Score=31.47 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 58999999999850279069998611345665322014554320001220121001356640257742122766104678
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIV 179 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i 179 (322)
+++.+.++.....+ .+.-+-|-+. +.+ |+ +.+.++|++.|-|-.|. ..+...|.+..
T Consensus 145 ~~~~l~~l~~~a~~-lgl~~LvEvh-------~~~---el-~~a~~~~~~iiGiNnRn-----------L~tf~vdl~~t 201 (459)
T PRK09427 145 DDEQYRQLAAVAHS-LNMGVLTEVS-------NEE---EL-ERAIALGAKVIGINNRN-----------LRDLSIDLNRT 201 (459)
T ss_pred CHHHHHHHHHHHHH-HCCEEEEEEC-------CHH---HH-HHHHHCCCCEEEEECCC-----------CCCEEECHHHH
T ss_conf 99999999999998-2990799968-------999---99-99984899989987898-----------86214877999
Q ss_pred HHHHHHCCC-CCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 766673887-530257777899898887420352344122000124399999987199
Q gi|254781167|r 180 YEIKKENPD-LFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 180 ~~l~~~~~~-~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~ 236 (322)
.++....|. ..++.--||.+.+|...+...+||++||-..+..|-+-.-+++.+++.
T Consensus 202 ~~l~~~ip~~~~~vsESGI~~~~dv~~l~~~~~~~LvGe~lmr~~d~~~~~r~l~~g~ 259 (459)
T PRK09427 202 RELAPLIPADVTVISESGIYTHAQVRELSPFVNGFLIGSSLMAEDDLDLAVRKLILGE 259 (459)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCEEEECHHHHCCCCHHHHHHHHHCCC
T ss_conf 9999768999749973799999999999843999997858757999899999973789
No 235
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=93.91 E-value=0.6 Score=26.80 Aligned_cols=148 Identities=15% Similarity=0.242 Sum_probs=79.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
.-|+=+.|+-.+|+.+.+ .+.+.|+|.|-+-.-+. .++.. ++..+++. ++.+.+=+-
T Consensus 63 ~~~lDvHLMv~~P~~~i~---~~~~~gad~I~~H~E~~--------------~~~~~---~i~~ik~~-g~k~GlAln-- 119 (224)
T PTZ00170 63 NTFLDVHLMVSDPERWVD---SFAKAGASQFTFHIEAT--------------EDPKA---VARKIRAA-GMQVGVALK-- 119 (224)
T ss_pred CCCEEEEEEECCHHHHHH---HHHHCCCCEEEECCCCC--------------CCHHH---HHHHHHHH-CCCEEEEEC--
T ss_conf 986468998638888799---99862896799850013--------------39999---99999971-476455607--
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45665322014554320001220121001356640257742122766104678766673887530257777899898887
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~ 206 (322)
-..+.+.+..++ .+.-++.|.|-.- .-|.++ |-+++. -++-|+++++..+++.|..-|+|+. +.+..+
T Consensus 120 --P~T~i~~l~~~l---~~~~iD~VLlMsV---~PGf~G--Q~Fi~~-~l~KI~~lr~~~~~~~I~VDGGIn~-~ti~~l 187 (224)
T PTZ00170 120 --PKTPAEELFPLI---DAGLVDMVLVMTV---EPGFGG--QSFMHD-MMPKVRQLRQRYPHLNIQVDGGINP-DTIDLA 187 (224)
T ss_pred --CCCCHHHHHHHH---HHCCCCEEEEEEE---CCCCCC--CCCCHH-HHHHHHHHHHCCCCCEEEEECCCCH-HHHHHH
T ss_conf --999879999997---1144578999855---699876--214588-9999999985489975999589998-999999
Q ss_pred H-HCCCCEEEECCCCCHHHHHHHH
Q ss_conf 4-2035234412200012439999
Q gi|254781167|r 207 L-PSVDGVMIGRAAYKNSAMLTTV 229 (322)
Q Consensus 207 l-~~~dgvMigRga~~~P~if~~I 229 (322)
. .|+|.+-.|++.++.+-.-..|
T Consensus 188 ~~aGad~~V~GSaiF~~~d~~~~i 211 (224)
T PTZ00170 188 AEAGANVIVAGTSIFKANDRKESI 211 (224)
T ss_pred HHCCCCEEEECHHHHCCCCHHHHH
T ss_conf 986999999785886799999999
No 236
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=93.70 E-value=0.16 Score=30.94 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=67.7
Q ss_pred EEECCCCCCCCCCCHHHHHHHHC---CCCCCHHH---HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 86113456653220145543200---01220121---00135664025774212276610467876667388-7530257
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIK---KSGVNGIW---IHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLN 194 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~---~~g~~~it---iH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~N 194 (322)
.+++|+. ..+..+.++... +.|+|.|. |++=+ +|++ ..+++..+.+.++....+ ++|+++-
T Consensus 105 ~~iiG~S----~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT~-------TK~~-~~~~~g~e~l~~~~~~~~h~~P~VAI 172 (210)
T TIGR00693 105 DKIIGVS----THNLEELAEAAACELKEGADYIGVGPIFPTP-------TKKD-AAPPVGLELLREIAATSIHDIPIVAI 172 (210)
T ss_pred CCEEEEE----ECCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------CCCC-CCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 9579853----3798999999987640789888863711588-------7889-87764888999999861788765887
Q ss_pred CCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHH
Q ss_conf 7778998988874-20352344122000124399
Q gi|254781167|r 195 GGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 195 Gdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~ 227 (322)
|||+. +.+.+.+ .|+|||-+=|+++.-+-...
T Consensus 173 GGI~~-~n~~~v~~~G~~~vAVvSaI~~A~d~~~ 205 (210)
T TIGR00693 173 GGITL-ENVAEVLAAGADGVAVVSAIMQAADPKA 205 (210)
T ss_pred CCCCH-HHHHHHHHCCCCEEEEEEEECCCHHHHH
T ss_conf 59887-8999999728873888651015722899
No 237
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.68 E-value=0.33 Score=28.75 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHCCC-------CCEEEECC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 699899999887531045-------37774425-6413677666889999855899999999985027906999861134
Q gi|254781167|r 56 GADISKLVEAAKIVEDFG-------YNEINLNV-GCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV 127 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~g-------~~~idlN~-GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~ 127 (322)
..+.++..+.|++..+.+ -++|-|-. |-+ -.|+.||....+-.+.+.+- +..|-.=|
T Consensus 80 c~taeEAVr~A~lAREl~~~~g~~~tnwIKLEVi~D~----------~tLlPD~~etl~Aae~Lv~e-GF~VlpY~---- 144 (267)
T CHL00162 80 CQTAEEAIRVAFLGRELAKQLGQEDNNFVKLEVIPDP----------KYLLPDPIGTLKAAEFLVRK-GFTVLPYI---- 144 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC----------CCCCCCHHHHHHHHHHHHHC-CCEEEEEC----
T ss_conf 2879999999999999853015678977999982798----------77798878999999999978-99998954----
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56653220145543200012201210013566402577421227661046787666738875302577778998988874
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL 207 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l 207 (322)
. ++ +-+++++++.||..|---|-- +=.| .|-.+...++-+.+. +++|+|.-.||-++.||...+
T Consensus 145 -~-dD----~v~akrLe~~Gc~avMPlgsP-IGSg--------~Gl~n~~~l~~i~e~-~~vPvIVDAGiG~pSdAa~aM 208 (267)
T CHL00162 145 -N-AD----PVLAKQLEDIGCATVMPLGSP-IGSG--------QGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAM 208 (267)
T ss_pred -C-CC----HHHHHHHHHCCCEEEEECCCC-CCCC--------CCCCCHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHH
T ss_conf -8-99----899999986598688634551-2368--------875899999999964-899889968989678889999
Q ss_pred H-CCCCEEEECCC
Q ss_conf 2-03523441220
Q gi|254781167|r 208 P-SVDGVMIGRAA 219 (322)
Q Consensus 208 ~-~~dgvMigRga 219 (322)
+ |||||++-.++
T Consensus 209 ElG~DaVL~NTAI 221 (267)
T CHL00162 209 ELGASGVLLNTAV 221 (267)
T ss_pred HCCCCEEEECHHH
T ss_conf 7467778701676
No 238
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.63 E-value=0.19 Score=30.43 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=45.9
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 826998999998875310453777442564136776668899998558999999999850279069998
Q gi|254781167|r 54 IGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVK 122 (322)
Q Consensus 54 l~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK 122 (322)
|-..|++...+-|+.-.+.|.+.||+|+|=|. ...++.+..+|..+.+++++|+++-
T Consensus 19 i~~~d~~~i~~~A~~Q~eaGA~~LDVN~g~~~------------~de~~~m~~~v~~iq~~~~~Pl~iD 75 (268)
T PRK07535 19 IEEKDAAFIQKLALRQVEAGANYLDVNAGTAV------------EEEPETMEWLVETVQEVVDVPLCID 75 (268)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCC------------CCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 98679899999999999849998996089877------------4689999999999973389996761
No 239
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.61 E-value=0.32 Score=28.78 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=53.8
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCCCC----CCCCCCCH------HHHHHHHHHHC-CCCCCCC--CC----
Q ss_conf 014554320001220121001356--640257742----12276610------46787666738-8753025--77----
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKA--ILKGLSPKD----NRKIPNLD------YDIVYEIKKEN-PDLFIGL--NG---- 195 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~--~~~g~s~~~----~~~~~~~~------~~~i~~l~~~~-~~~~i~~--NG---- 195 (322)
.+.+-++.+.++|.|.|-||+=.. ..|.+||.- +.|-|... .+.+.++++.+ ++.+|+. |+
T Consensus 138 ~f~~AA~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~ 217 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99999999998299989962567614877338754788574579878887999999999999709987499973601268
Q ss_pred -CCCCHHHHHHH---H--HCCCCEEEECCCCCH
Q ss_conf -77899898887---4--203523441220001
Q gi|254781167|r 196 -GLEDMSQALKI---L--PSVDGVMIGRAAYKN 222 (322)
Q Consensus 196 -di~~~~~a~~~---l--~~~dgvMigRga~~~ 222 (322)
+=.+.++..+. + .|+|-+=++.|....
T Consensus 218 ~~G~~~~e~~~~~~~l~~~GvD~i~vs~G~~~~ 250 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHEA 250 (353)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999899999999999998199999963774446
No 240
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.54 E-value=0.39 Score=28.19 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 89999999998502790699986113456653220145543200012201210---013566402577421227661046
Q gi|254781167|r 101 PDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI---HARKAILKGLSPKDNRKIPNLDYD 177 (322)
Q Consensus 101 p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti---H~Rt~~~~g~s~~~~~~~~~~~~~ 177 (322)
++...+.++.......-.+.+ -+|..+. +.+.+.++.. ..++++.|+| ||... .-.+
T Consensus 81 ~ee~~~~~~~~~~~~~~~v~v--siGi~~~-d~~r~~~i~~--~~~~~~~i~iDvA~G~~~---------------~~~~ 140 (347)
T PRK05096 81 VEEWAAFINNSSADVLKHVMV--STGTSDA-DFEKTKQILA--LSPALNFICIDVANGYSE---------------HFVQ 140 (347)
T ss_pred HHHHHHHHHHCCCCCCCEEEE--EEECCHH-HHHHHHHHHH--CCCCCCEEEEECCCCCCH---------------HHHH
T ss_conf 999999985214344673899--9917878-9999999995--289989899977986208---------------8999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 787666738875302577778998988874-20352344122
Q gi|254781167|r 178 IVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 178 ~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRg 218 (322)
.+..+++.+|+.+|+ -|+|-|.+-+.... .|+|+|-+|=|
T Consensus 141 ~i~~ik~~~~~~~ii-aGNvaT~e~~~~L~~~GaD~vkVGIG 181 (347)
T PRK05096 141 FVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIVKVGIG 181 (347)
T ss_pred HHHHHHHHCCCCEEE-CCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 999999878998088-14312399999999737889997677
No 241
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.49 E-value=0.69 Score=26.35 Aligned_cols=170 Identities=22% Similarity=0.298 Sum_probs=95.6
Q ss_pred HHHHHHCCCCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH-------HHHHHHH
Q ss_conf 78983027457846999826-998999998875310453777442564136776668899998558-------9999999
Q gi|254781167|r 37 KKNILGFSTQEKPLALQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP-------DIVGDCI 108 (322)
Q Consensus 37 ~~~~~~~~~~e~p~~~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p-------~~~~~iv 108 (322)
..++.+....+.|+ ++.| .|+ -.|++++..||+.+=+ ...+.-++.+.-| ..+.+.+
T Consensus 6 ~~rlR~ll~~~~~l--~~pg~~D~----lsA~l~e~aGF~a~~~---------sG~~~saa~lG~PD~gl~t~~e~~~~~ 70 (292)
T PRK11320 6 GARFRAALAAEKPL--QIVGTINA----YHALLAERAGFQAIYL---------SGGGVAAASLGLPDLGITTLDDVLIDV 70 (292)
T ss_pred HHHHHHHHCCCCCE--EECCCCCH----HHHHHHHHCCCCEEEE---------CHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 99999997289948--95578888----9999999859999996---------429998885699984547788999999
Q ss_pred HHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC------CCCCCCHHHHHHHH
Q ss_conf 998502790699986113456653220145543200012201210013566402577421------22766104678766
Q gi|254781167|r 109 AAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDN------RKIPNLDYDIVYEI 182 (322)
Q Consensus 109 ~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~------~~~~~~~~~~i~~l 182 (322)
+.+..++++||.+-.=.||.+. .+....++.++++|+.+|.|-=-+ .||+. .-++. -+.+.++
T Consensus 71 ~~I~~a~~lPviaD~DtGyG~~---~nv~rtV~~~e~aGvagi~IEDq~------~pKrcgh~~gk~lv~~--~e~~~KI 139 (292)
T PRK11320 71 RRITDACDLPLLVDIDTGFGGA---FNIARTIKSMIKAGAAAVHIEDQV------GQKRCGHRPNKEIVSQ--EEMVDRI 139 (292)
T ss_pred HHHHHCCCCCEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEECCCC------CCCCCCCCCCCCCCCH--HHHHHHH
T ss_conf 9998355888798776778827---889999999997499689841555------6655686667533349--9999999
Q ss_pred HH-----HCCCCCCCCCCC---CCCHHHHHHH----H-HCCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 67-----388753025777---7899898887----4-203523441220001243999999871
Q gi|254781167|r 183 KK-----ENPDLFIGLNGG---LEDMSQALKI----L-PSVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 183 ~~-----~~~~~~i~~NGd---i~~~~~a~~~----l-~~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
+. .-|++.|++--| +...++|++. . .|+|+|++ -++.++--+..+...+.
T Consensus 140 ~AA~~ar~~~df~IiARTDA~~~~gldeAi~Ra~aY~eAGAD~if~--ea~~~~ee~~~~~~~~~ 202 (292)
T PRK11320 140 KAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP--EAITELDMYRRFADAVK 202 (292)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEC--CCCCCHHHHHHHHHHCC
T ss_conf 9999856799859999536334588699999999999779989941--78999999999999779
No 242
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.42 E-value=0.72 Score=26.21 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=95.4
Q ss_pred CCHHHHHHH-HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 998999998-8753104537774425641367766688999985589999999998502790699986113456653220
Q gi|254781167|r 57 ADISKLVEA-AKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~a-a~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
+-|+...+. ++...+.|.|.+-+--+ |.|..-+..-+++++++-.. +-+-+--..+...+.+.
T Consensus 101 ~ypddvv~~fv~~~~~~GidvfriFD~---------------LNd~~n~~~ai~~vk~~G~~-~~~~i~yt~sp~ht~~y 164 (468)
T PRK12581 101 HYADDIVDKFISLSAQNGIDVFRIFDA---------------LNDPRNIQQALRAVKKTGKE-AQLCIAYTTSPVHTLNY 164 (468)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC---------------CCCHHHHHHHHHHHHHCCCE-EEEEEEECCCCCCCHHH
T ss_conf 588289999999999759987997314---------------67678999999999963874-89999966897554999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCHHHH--H-HHHHCCC
Q ss_conf 145543200012201210013566402577421227661046787666738875302577-77899898--8-8742035
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG-GLEDMSQA--L-KILPSVD 211 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG-di~~~~~a--~-~~l~~~d 211 (322)
++++++.+++.|++.|+| .-+-+-++ |.+-++.|.++|+ .+++||..-. +-.....| . ....|+|
T Consensus 165 y~~~ak~l~~~Gad~I~i---KDmaGlL~-------P~~a~~LV~~lK~-~~~iPI~~HtH~t~Gla~a~~laAieAGaD 233 (468)
T PRK12581 165 YLSLVKELVEMGADSICI---KDMAGILT-------PKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVEAGAD 233 (468)
T ss_pred HHHHHHHHHHCCCCEEEE---ECCCCCCC-------HHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 999999999739998998---47877768-------8999999999983-679865998258875499999999981999
Q ss_pred CEEEECCCC----CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 234412200----0124399999987199888899988999999999999999999998522876799899899987389
Q gi|254781167|r 212 GVMIGRAAY----KNSAMLTTVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGF 287 (322)
Q Consensus 212 gvMigRga~----~~P~if~~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGl 287 (322)
.|=.+=+.+ +.|.+-+-+...-.++ ..+ ....+.......+...-...|..... ........ ----|-|.+
T Consensus 234 iVD~Ai~~~s~gtSqP~~~s~v~~l~~~~-~~~-~ld~~~l~~~~~y~~~vr~~y~~~~~-~~~~~~~~--d~~v~~hqi 308 (468)
T PRK12581 234 RIDTALSPFSEGTSQPATESMYLALKEAG-YDI-TLDETLLEQAANHLRQARQKYLADGI-LDPSLLFP--DPRTLQYQV 308 (468)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHCCC-CCC-CCCHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCC--CCHHHCCCC
T ss_conf 99744645357988866999999973389-887-66889999999999999998742355-78655678--814531668
Q ss_pred CCH--HHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 998--999999986217811069999999
Q gi|254781167|r 288 PNS--RRCRHILTVEAGASTATHHIIETA 314 (322)
Q Consensus 288 pga--k~~R~~Ls~~~~~~~~~~~iie~~ 314 (322)
||+ +.+++.+ .+....+-..++++++
T Consensus 309 PGGm~sNl~~Ql-~~~g~~dr~~eV~~e~ 336 (468)
T PRK12581 309 PGGMLSNMLSQL-KQANAESKLEEVLAEV 336 (468)
T ss_pred CHHHHHHHHHHH-HHCCCHHHHHHHHHHH
T ss_conf 234788899999-9778364599999999
No 243
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.42 E-value=0.24 Score=29.69 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCE-EEECCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 45784699982699899999887531045377-744256413677666----8899998558999999999850279069
Q gi|254781167|r 45 TQEKPLALQIGGADISKLVEAAKIVEDFGYNE-INLNVGCPSARVHEG----SFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~-idlN~GCP~~~v~~~----g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
|--+|-..|=.| .+-+.--.++-+++|... -|+---.-...+.+- --||.|+++++++.++-+ ++.||
T Consensus 65 ~RTs~~sfrG~G--~egL~~L~~vk~~~glpi~TdVh~~~q~~~v~~~vDvlQIpAfl~rqtdLl~a~a~-----t~kpV 137 (266)
T PRK13398 65 PRTSPYSFQGLG--EEGLKILKEVGDKYNMPVVTEVMDTRDVEEVADYIDMLQIGSRNMQNFELLKEVGK-----TKKPI 137 (266)
T ss_pred CCCCCCCCCCCC--HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHEEECCHHCCCHHHHHHHHH-----HCCCE
T ss_conf 899985556885--88999999999872995477745837699999751011225042279899999997-----09966
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CC
Q ss_conf 9986113456653220145543200012201210013566402577421227661046787666738875302577--77
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG--GL 197 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG--di 197 (322)
-+|- |. ..+...+...++.+...|.+.+.+--| |.++-...+.-..||..+..+++. +++||+..- .+
T Consensus 138 ~iKk--g~--~~s~~~~~~a~eki~~~Gn~~v~l~ER-----G~~t~~gy~~~v~D~~~i~~mk~~-~~lPVi~D~SHs~ 207 (266)
T PRK13398 138 LLKR--GM--SATIEEWLYAAEYIMSEGNENVVLCER-----GIRTFETYTRNTLDLAAVAVIKEL-SHLPIIVDPSHAT 207 (266)
T ss_pred EECC--CC--CCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCCCCCCHHHHHHHHHHHC-CCCCEEECCCCCC
T ss_conf 7348--76--688899999999998479983899842-----524577744352136779999857-7999898885335
Q ss_pred CCHHHH----HH-HHHCCCCEEEECCCCCHHH
Q ss_conf 899898----88-7420352344122000124
Q gi|254781167|r 198 EDMSQA----LK-ILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 198 ~~~~~a----~~-~l~~~dgvMigRga~~~P~ 224 (322)
-..+-+ .. +.-|+||+||= ..-||-
T Consensus 208 G~r~~v~~la~aAva~G~dGlfiE--~Hp~P~ 237 (266)
T PRK13398 208 GRRELVIPMAKAAIAAGADGLMIE--VHPEPE 237 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--ECCCCC
T ss_conf 679999999999998399889998--269802
No 244
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=93.40 E-value=0.27 Score=29.36 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=90.0
Q ss_pred CCCEEEEE----ECCCHHHHHHHHHHHHCCCCCEEEECCCC----------CHHHH-------HHHHHHHHHH-------
Q ss_conf 78469998----26998999998875310453777442564----------13677-------6668899998-------
Q gi|254781167|r 47 EKPLALQI----GGADISKLVEAAKIVEDFGYNEINLNVGC----------PSARV-------HEGSFGACLM------- 98 (322)
Q Consensus 47 e~p~~~Ql----~g~~p~~~~~aa~~~~~~g~~~idlN~GC----------P~~~v-------~~~g~GaaLl------- 98 (322)
.+-.+.|+ ||-+++.+..+ +.|.|-+|= |-.|| ...-.|..++
T Consensus 213 ~~s~I~QvaSGRFGV~~~yL~~a---------~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHD 283 (485)
T COG0069 213 GRSAIKQVASGRFGVTPEYLANA---------DAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHD 283 (485)
T ss_pred CCCEEEEECCCCCCCCHHHHCCC---------CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 45549996166676487882756---------369998605777898898997657988997618998877758997466
Q ss_pred -HHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCCC-CCCCCC
Q ss_conf -55899999999985027-90699986113456653220145543200012201210013566402--57742-122766
Q gi|254781167|r 99 -LNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKG--LSPKD-NRKIPN 173 (322)
Q Consensus 99 -~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g--~s~~~-~~~~~~ 173 (322)
-.++-+.+.+..++++. ..+|+||+=.+ +... .++--+.++++|.|+|-|=. .| -||.. ..+.|
T Consensus 284 iysieDLaqlI~dLk~~~~~~~I~VKlva~-----~~v~--~iaagvakA~AD~I~IdG~~---GGTGAsP~~~~~~~G- 352 (485)
T COG0069 284 IYSIEDLAQLIKDLKEANPWAKISVKLVAE-----HGVG--TIAAGVAKAGADVITIDGAD---GGTGASPLTSIDHAG- 352 (485)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEECC-----CCHH--HHHHHHHHCCCCEEEECCCC---CCCCCCCHHHHHCCC-
T ss_conf 569889999999999618897069999256-----5567--78766640469889975899---867878565763687-
Q ss_pred CHHHHHH-HHHH----H-C-CCCCCCCCCCCCCHHHHHHH-HHCCCCEEEECCCCCHHH
Q ss_conf 1046787-6667----3-8-87530257777899898887-420352344122000124
Q gi|254781167|r 174 LDYDIVY-EIKK----E-N-PDLFIGLNGGLEDMSQALKI-LPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 174 ~~~~~i~-~l~~----~-~-~~~~i~~NGdi~~~~~a~~~-l~~~dgvMigRga~~~P~ 224 (322)
.-|+.-- ...+ . + ..+.++..|++.|..|.... +=|+|.|=+|++++----
T Consensus 353 iP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~G 411 (485)
T COG0069 353 IPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALG 411 (485)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHHHHH
T ss_conf 07998899999999975986416999428706789999999708645520219999853
No 245
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=93.37 E-value=0.73 Score=26.16 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=93.1
Q ss_pred HHHHCCCCCCCEEEE--EECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 983027457846999--82699899999887531045377744256413677666889999855899999999985027-
Q gi|254781167|r 39 NILGFSTQEKPLALQ--IGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL- 115 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Q--l~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~- 115 (322)
++|....+.-|+-.- +...+++.+.+.++...+.||..+-+..|.. |+.-.+.++++++++
T Consensus 117 ~LLG~~rd~i~~y~s~~~~~~~~~~~~~~~~~~~~~G~~~~K~k~g~~----------------~~~d~~~v~avR~~~G 180 (352)
T cd03328 117 RLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQGIPRVKMKIGRD----------------PRRDPDRVAAARRAIG 180 (352)
T ss_pred HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCC----------------HHHHHHHHHHHHHHHC
T ss_conf 984799874478752686789989999999999975998660347999----------------7888999999999748
Q ss_pred -CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCC
Q ss_conf -906999861134566532201455432000122012100135664025774212276610467876667388-753025
Q gi|254781167|r 116 -SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGL 193 (322)
Q Consensus 116 -~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~ 193 (322)
+.++.|-.=-+|+ ....+.+++.+++.++.++-= ..++-|++..+.+++..| .+||..
T Consensus 181 ~~~~l~vDan~~~~----~~~Ai~~~~~l~~~~l~w~Ee----------------P~~~~d~~~~~~lr~~~~~~~pia~ 240 (352)
T cd03328 181 PDAELFVDANGAYS----RKQALALARAFADEGVTWFEE----------------PVSSDDLAGLRLVRERGPAGMDIAA 240 (352)
T ss_pred CCCEEEECCCCCCC----HHHHHHHHHHHHHHCCCEEEC----------------CCCCCCHHHHHHHHHHCCCCCCEEC
T ss_conf 89539867876889----999999999842306373878----------------9996689999999983799976414
Q ss_pred CCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 777789989888742--0352344122000124399999
Q gi|254781167|r 194 NGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 194 NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~I~ 230 (322)
.=.+.+..+..++++ .+|.+++-=.-.|=-.=+.+|.
T Consensus 241 gE~~~~~~~~~~~i~~~a~Di~~~d~~~~GGit~~~kia 279 (352)
T cd03328 241 GEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAA 279 (352)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCEECCHHHHHHHH
T ss_conf 866589899999998178785840411008699999999
No 246
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.31 E-value=0.26 Score=29.49 Aligned_cols=163 Identities=21% Similarity=0.228 Sum_probs=90.6
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEE-EECCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 27457846999826998999998875310453777-442564136776668----8999985589999999998502790
Q gi|254781167|r 43 FSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEI-NLNVGCPSARVHEGS----FGACLMLNPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 43 ~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~i-dlN~GCP~~~v~~~g----~GaaLl~~p~~~~~iv~~~~~~~~~ 117 (322)
+.|--+|...|=.|.+ -+.--.+.-+++|...+ |+---+-...+.+-. -||.+|+|++++.++ .+ ++.
T Consensus 137 ~KPRTsPysFqGlGee--GL~~L~~ak~e~GLpvvTEV~~~~~ve~v~~~~DilQIGARn~qNf~LL~~~----g~-t~k 209 (352)
T PRK13396 137 YKPRTSPYAFQGHGES--ALELLAAAREATGLGIITEVMDAADLDKIAEVADVIQVGARNMQNFSLLKKV----GA-QDK 209 (352)
T ss_pred CCCCCCCCCCCCCCHH--HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCEEEECCHHHCCHHHHHHH----HC-CCC
T ss_conf 2478998543587087--9999999999869972688679999999986588899892540599999998----54-698
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCC--
Q ss_conf 699986113456653220145543200012201210013566402577421-22766104678766673887530257--
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDN-RKIPNLDYDIVYEIKKENPDLFIGLN-- 194 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~-~~~~~~~~~~i~~l~~~~~~~~i~~N-- 194 (322)
||-+|=-++ .+.+.|+.-++.+...|...|.+--| |.++-+. .+.-..||..|..+|+ .+++||+..
T Consensus 210 PVllKrg~~----~ti~ewl~AaEyi~~~Gn~~viLcER-----Girtfe~~~~RntlDl~aip~~k~-~thlPVi~DPS 279 (352)
T PRK13396 210 PVLLKRGMS----ATIDEWLMAAEYILAAGNPNVILCER-----GIRTFDRQYTRNTLDLSVIPVLRS-LTHLPIMIDPS 279 (352)
T ss_pred EEEECCCCC----CCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCCCCCCCCCHHHHHHHHH-CCCCCEEECCC
T ss_conf 079737888----99999986999999769985899948-----977566765467755788799974-89998897898
Q ss_pred --CCCCCHHH--HHH-HHHCCCCEEEECCCCCHHH
Q ss_conf --77789989--888-7420352344122000124
Q gi|254781167|r 195 --GGLEDMSQ--ALK-ILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 195 --Gdi~~~~~--a~~-~l~~~dgvMigRga~~~P~ 224 (322)
.|-++.-. +.. +.-|+||+||= ..-||-
T Consensus 280 H~~G~r~~V~~la~AAva~GaDGL~iE--vHp~P~ 312 (352)
T PRK13396 280 HGTGKSEYVPSMAMAAIAAGTDSLMIE--VHPNPA 312 (352)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE--ECCCCC
T ss_conf 645787279999999998399889998--468801
No 247
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=93.31 E-value=0.75 Score=26.10 Aligned_cols=126 Identities=10% Similarity=-0.038 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCCCCCCCCC
Q ss_conf 99899999887531045377744256413677666889999855899999999985027--9069998611345665322
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~RlG~~~~~~~~ 134 (322)
..|+.+++-++...+.||..+-+..+.+ .+++.-.+.++++++++ ++.+.|-.--+| +..
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~~K~k~~~~--------------~~~~~d~~~v~avReavG~d~~l~vDan~~~----~~~ 203 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWY----SRA 203 (368)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC--------------CCHHHHHHHHHHHHHHHCCCEEEEECCCCCC----CHH
T ss_conf 8999999999999976998998658989--------------7689999999999997389708987685455----478
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHH--CCC
Q ss_conf 014554320001220121001356640257742122766104678766673887530257777899-89888742--035
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDM-SQALKILP--SVD 211 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~-~~a~~~l~--~~d 211 (322)
....+++.+++.++.++-= ..++-|++..++|++.. ++||.+...+.+. +.....++ .+|
T Consensus 204 ~Ai~~~~~le~~~~~w~Ee----------------P~~~~d~~~~~~l~~~~-~ipIa~gE~~~~~~~~~~~~i~~~avd 266 (368)
T cd03329 204 DALRLGRALEELGFFWYED----------------PLREASISSYRWLAEKL-DIPILGTEHSRGALESRADWVLAGATD 266 (368)
T ss_pred HHHHHHHHHCCCCEEEEEC----------------CCCCCCHHHHHHHHHHC-CCCEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8999876433465157517----------------99844799999999609-999996898776289999998759741
Q ss_pred CEEEEC
Q ss_conf 234412
Q gi|254781167|r 212 GVMIGR 217 (322)
Q Consensus 212 gvMigR 217 (322)
.+++-=
T Consensus 267 ivq~d~ 272 (368)
T cd03329 267 FLRADV 272 (368)
T ss_pred EECCCC
T ss_conf 672365
No 248
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=93.24 E-value=0.14 Score=31.41 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=50.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEE
Q ss_conf 1455432000122012100135664025774212276610467876667388753025777789989888742-035234
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVM 214 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvM 214 (322)
..+-++.+.++|+|.|.|---. |.| .+ -.+.++.+++.+|+...+..|+|-+.+.+..+.+ |+|+|-
T Consensus 243 ~~eRa~~Lv~aGvD~lviD~Ah----Ghs----~~----v~~~ik~ik~~~~~~~~i~aGNVaT~~~~~~L~~aGad~vk 310 (497)
T PRK07107 243 YEERVPALVEAGADVLCIDSSD----GYS----EW----QKRTLDYIKEKYGDTVKVGAGNVVDRDGFLYLAEAGADFVK 310 (497)
T ss_pred HHHHHHHHHHCCCCEEEECCCC----CCH----HH----HHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHCCCCEEE
T ss_conf 9999999998599999803435----352----99----99999999986698763414521269999999980898689
Q ss_pred EECC
Q ss_conf 4122
Q gi|254781167|r 215 IGRA 218 (322)
Q Consensus 215 igRg 218 (322)
||=|
T Consensus 311 VGiG 314 (497)
T PRK07107 311 VGIG 314 (497)
T ss_pred ECCC
T ss_conf 7115
No 249
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.21 E-value=0.27 Score=29.34 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=58.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEE
Q ss_conf 45543200012201210013566402577421227661046787666738875302577778998988874-20352344
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMI 215 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMi 215 (322)
.+.. .+...|++.+.+=+= +... .|+ ...++.-++.+.+..+..+++|+++-||| +.+++...+ .|+|||-+
T Consensus 113 ~e~~-~A~~~gaDYig~Gpi---f~T~-TK~-~~~~p~G~~~l~~~~~~~~~iPvvAIGGI-~~~n~~~v~~~Ga~gvAV 185 (211)
T PRK03512 113 MEID-VALAARPSYIALGHV---FPTQ-TKQ-MPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAV 185 (211)
T ss_pred HHHH-HHHHCCCCEEEECCC---CCCC-CCC-CCCCCCHHHHHHHHHHHCCCCCEEEECCC-CHHHHHHHHHCCCCEEEE
T ss_conf 9999-998649983998563---3458-878-99887249999999997179998998896-899999999839999999
Q ss_pred ECCCCCHHHHHHHHHHHH
Q ss_conf 122000124399999987
Q gi|254781167|r 216 GRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 216 gRga~~~P~if~~I~~~l 233 (322)
-++++..+-.-..+++++
T Consensus 186 iSaI~~a~dp~~a~~~l~ 203 (211)
T PRK03512 186 VSAITQAADWRLATAQLL 203 (211)
T ss_pred EHHHHCCCCHHHHHHHHH
T ss_conf 518746999999999999
No 250
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.19 E-value=0.33 Score=28.70 Aligned_cols=190 Identities=14% Similarity=0.072 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCC-HHHHCCC-----HHHHH----HC-CCCCCCEEEEE--ECCCHHHHHHHHHHH
Q ss_conf 786078999999828982998170332-4776089-----78983----02-74578469998--269989999988753
Q gi|254781167|r 3 DWTDRHYRFFARLLTNNALLYTEMIVA-DAILRGD-----KKNIL----GF-STQEKPLALQI--GGADISKLVEAAKIV 69 (322)
Q Consensus 3 g~Td~~fR~l~r~~~~~~~~~TEmi~a-~~l~~~~-----~~~~~----~~-~~~e~p~~~Ql--~g~~p~~~~~aa~~~ 69 (322)
|+-|..==+++.+.|-+.++.|-.-.+ ..+-..+ ..+++ .. ...+-|+++-. +-+++....+.++.+
T Consensus 23 g~~D~lsA~l~e~aGF~a~~~sG~~~saa~lG~PD~gl~t~~e~~~~~~~I~~a~~lPviaD~DtGyG~~~nv~rtV~~~ 102 (292)
T PRK11320 23 GTINAYHALLAERAGFQAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTIKSM 102 (292)
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78888999999985999999642999888569998454778899999999983558887987767788278899999999
Q ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 1045377744256413677666889999855899999999985027-906999861134566532201455432000122
Q gi|254781167|r 70 EDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV 148 (322)
Q Consensus 70 ~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~ 148 (322)
+..|+.+|.|-=-. .||-+..-.|-.|..-.+-+.+| ++.+++- +-.+.+-=|.---.....+..++=++...++|+
T Consensus 103 e~aGvagi~IEDq~-~pKrcgh~~gk~lv~~~e~~~KI-~AA~~ar~~~df~IiARTDA~~~~gldeAi~Ra~aY~eAGA 180 (292)
T PRK11320 103 IKAGAAAVHIEDQV-GQKRCGHRPNKEIVSQEEMVDRI-KAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGA 180 (292)
T ss_pred HHCCCCEEEECCCC-CCCCCCCCCCCCCCCHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97499689841555-66556866675333499999999-99998567998599995363345886999999999997799
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC---CCC---CCHHHHHHHHHCCCCEE
Q ss_conf 0121001356640257742122766104678766673887530257---777---89989888742035234
Q gi|254781167|r 149 NGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN---GGL---EDMSQALKILPSVDGVM 214 (322)
Q Consensus 149 ~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N---Gdi---~~~~~a~~~l~~~dgvM 214 (322)
|.|.+|+-+ +-+-++++.+.++ .|+..| |+- .+.++..+ -|++-|.
T Consensus 181 D~if~ea~~-----------------~~ee~~~~~~~~~-~Pll~n~~e~g~tP~~s~~el~~--lG~~~vi 232 (292)
T PRK11320 181 DMIFPEAIT-----------------ELDMYRRFADAVK-VPILANITEFGATPLFTTEELAS--AGVAMVL 232 (292)
T ss_pred CEEECCCCC-----------------CHHHHHHHHHHCC-CCEEEEECCCCCCCCCCHHHHHH--CCCCEEE
T ss_conf 899417899-----------------9999999999779-99899848999998879999997--7998999
No 251
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.12 E-value=0.3 Score=28.97 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=84.5
Q ss_pred EECCCHHH-HHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCC--CEEEEEEE
Q ss_conf 82699899-999887531045-3777442564136776668899------99855899999999985027--90699986
Q gi|254781167|r 54 IGGADISK-LVEAAKIVEDFG-YNEINLNVGCPSARVHEGSFGA------CLMLNPDIVGDCIAAMCKAL--SIPVTVKC 123 (322)
Q Consensus 54 l~g~~p~~-~~~aa~~~~~~g-~~~idlN~GCP~~~v~~~g~Ga------aLl~~p~~~~~iv~~~~~~~--~~pvsvK~ 123 (322)
++-.+.|. +++|| .+.| .-.+--.-.||.-.|.+...|. ++.+|.++..++++...++- -+-|||-+
T Consensus 85 l~hp~gE~~~AraA---~~~gi~~~lSt~s~~s~Eeia~a~~~~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTVD~ 161 (351)
T cd04737 85 LAHATGEVATARGM---AEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADA 161 (351)
T ss_pred HCCCCHHHHHHHHH---HHCCCCEEECCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 44684789999999---975986340567777899999746799708997135887999999999998699989996317
Q ss_pred E-CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 1-1345665322014554320001220121001356-6402577421227661046787666738875302577778998
Q gi|254781167|r 124 R-IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA-ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS 201 (322)
Q Consensus 124 R-lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~-~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~ 201 (322)
- .|+.+.+ ..+ .|. ...|...+....+.. ...+.+.-.....+...|+.+..+++.- ..|++ --||.+.+
T Consensus 162 p~~g~Rerd-~r~--~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~di~~lr~~~-~lpli-lKGI~~~e 233 (351)
T cd04737 162 TVGGNREAD-IRN--KFQ---FPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKIS-GLPVI-VKGIQSPE 233 (351)
T ss_pred CCCCCCHHH-HHC--CCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHC-CCCEE-ECCCCCHH
T ss_conf 887862778-862--998---89998722344677755555688988632579989999999864-99853-23667799
Q ss_pred HHHHHHH-CCCCEEE----ECCCCCHHHHH---HHHHHHH
Q ss_conf 9888742-0352344----12200012439---9999987
Q gi|254781167|r 202 QALKILP-SVDGVMI----GRAAYKNSAML---TTVDEYF 233 (322)
Q Consensus 202 ~a~~~l~-~~dgvMi----gRga~~~P~if---~~I~~~l 233 (322)
||....+ |+|||.| ||..=+-|.-+ .+|.+..
T Consensus 234 DA~~A~~~G~dgIvVSNHGGRQLD~~p~~i~~LpeI~~av 273 (351)
T cd04737 234 DADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999987499889977875123567604788999999986
No 252
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.10 E-value=0.8 Score=25.87 Aligned_cols=50 Identities=32% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 3220145543200012201210013566402577421227661046787666738875302
Q gi|254781167|r 132 PAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIG 192 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~ 192 (322)
+.+++.++++.+++.|++.|+| .- ..|+ -.|.+-++.|.++|+.+ ++||-
T Consensus 153 t~~yy~~~a~~l~~~G~d~i~i---KD-maGl------l~P~~a~~LV~alk~~~-~lpI~ 202 (580)
T PRK09282 153 TLETWVDLAKQLEEMGCDSICI---KD-MAGL------LTPYAAYELVSALKKEV-DLPVH 202 (580)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE---EC-CCCC------CCHHHHHHHHHHHHHHC-CCCEE
T ss_conf 3899999999999749988997---26-6557------89899999999999861-98169
No 253
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.98 E-value=0.22 Score=29.95 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=57.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEE
Q ss_conf 5543200012201210013566402577421227661046787666738875302577778998988874-203523441
Q gi|254781167|r 138 NLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIG 216 (322)
Q Consensus 138 ~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMig 216 (322)
+-+..+.+.|+|.+++=+-- ...+ | ..+.++..|+.+..+++.. ++|+++-|||+. ++..+.+ .|+|||-+-
T Consensus 106 ~e~~~a~~~g~DYi~~gpvf---~T~t-K-~~~~~~~g~~~l~~~~~~~-~~Pv~AiGGI~~-~ni~~~~~~G~~giAv~ 178 (196)
T cd00564 106 EEALRAEELGADYVGFGPVF---PTPT-K-PGAGPPLGLELLREIAELV-EIPVVAIGGITP-ENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHHHHHHCCCEEEECCCC---CCCC-C-CCCCCCCCHHHHHHHHHHC-CCCEEEECCCCH-HHHHHHHHCCCCEEEEH
T ss_conf 99999887099938864655---7898-8-8877877889999999867-999899858999-99999998099999972
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 2200012439999
Q gi|254781167|r 217 RAAYKNSAMLTTV 229 (322)
Q Consensus 217 Rga~~~P~if~~I 229 (322)
++++.++-.-..+
T Consensus 179 s~i~~~~dp~~~~ 191 (196)
T cd00564 179 SAITGADDPAAAA 191 (196)
T ss_pred HHHHCCCCHHHHH
T ss_conf 9977799999999
No 254
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.96 E-value=0.3 Score=28.96 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 99899999887531045377744256413677666889-9998558999999999850279069998611
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFG-ACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G-aaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+++...+-|+.+.+.|+|.|||..----| |+. -..-...+++..+++++++..++||||-++-
T Consensus 21 ~~~~~a~~~a~~~i~~GAdiIDIG~eSTrP-----g~~~i~~~eE~~Rl~pvl~~i~~~~~v~iSIDT~~ 85 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRP-----GAEPVSVEEELERVIPVLRALAGEPDVPISVDTFN 85 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899999999999998799999979877899-----99747778888885005688742799609997988
No 255
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.96 E-value=0.84 Score=25.73 Aligned_cols=188 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred HHHHHHHH----HCCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 89999998----289829981----70332477608978983----0274578469998269989999988753104537
Q gi|254781167|r 8 HYRFFARL----LTNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYN 75 (322)
Q Consensus 8 ~fR~l~r~----~~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~ 75 (322)
.+|+++.. .|.++++.. |+.+ |....+++++ +.....-|+++++.+.+.++..+-++..++.|+|
T Consensus 25 ~l~~~v~~~i~~~Gv~Gi~~~GstGE~~~---Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~st~~ai~~a~~a~~~Gad 101 (294)
T PRK04147 25 GLRQLVRFNIEKQGIDGLYVGGSTGEAFL---LSTEERKQVLEIVAEEAKGKIKLIAQVGSVNTAEAQELAKYATELGYD 101 (294)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHH---CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999998779989997951316434---899999999999999818973276347888889999999999975998
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCCCCCCCCHHHHHHHHCC-CCCCHH
Q ss_conf 774425641367766688999985589999999998502790699986---1134566532201455432000-122012
Q gi|254781167|r 76 EINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC---RIGVDDQIPAVALRNLVKSIKK-SGVNGI 151 (322)
Q Consensus 76 ~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~---RlG~~~~~~~~~~~~~~~~~~~-~g~~~i 151 (322)
.|=+ .-|.-. ...++-+.+-.+.+.+++++||-+=- |.|.+ -+. +.+..+.+ -++.
T Consensus 102 ~v~~--~pP~y~----------~~~~~~i~~~f~~va~a~~~pi~iYn~P~~tg~~--~~~----~~l~~L~~~~~i~-- 161 (294)
T PRK04147 102 AISA--VTPFYY----------PFSFEEICDYYREIIDSADNPMIVYNIPALTGVN--LSL----DQFNELFTLPKII-- 161 (294)
T ss_pred EEEE--CCCCCC----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCH----HHHHHHHCCCCEE--
T ss_conf 8997--278677----------8998999999999985049977887567541678--899----9999995689988--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 10013566402577421227661046787666738875302577778998988874203523441220001243999999
Q gi|254781167|r 152 WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 152 tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~ 231 (322)
.| |+ .. .|...+.++.+..|+.. +.+|. +.--...+.-|++|++.+-+ ---|+++.++-+
T Consensus 162 gi------------K~--s~--~d~~~~~~i~~~~~~~~-v~~G~--d~~~~~~~~~Ga~G~i~~~~-n~~p~~~~~l~~ 221 (294)
T PRK04147 162 GV------------KQ--TA--GDLYQLERIRKAFPDKL-IYNGF--DEMFLSGLLAGADGAIGSTY-NVNGWRARQIFE 221 (294)
T ss_pred EE------------EE--CC--CCHHHHHHHHHHCCCEE-EEECC--HHHHHHHHHCCCCEEEECHH-HHHHHHHHHHHH
T ss_conf 99------------92--88--99999999997489849-99586--58799999879969994479-867899999999
Q ss_pred HHCCCCC
Q ss_conf 8719988
Q gi|254781167|r 232 YFSNPLT 238 (322)
Q Consensus 232 ~l~~~~~ 238 (322)
.+..+..
T Consensus 222 ~~~~gd~ 228 (294)
T PRK04147 222 AAKAGDI 228 (294)
T ss_pred HHHCCCH
T ss_conf 9987899
No 256
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=92.93 E-value=0.85 Score=25.70 Aligned_cols=42 Identities=2% Similarity=-0.191 Sum_probs=25.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECC-CCCHHHHHHHHH
Q ss_conf 998269989999988753104537774425-641367766688
Q gi|254781167|r 52 LQIGGADISKLVEAAKIVEDFGYNEINLNV-GCPSARVHEGSF 93 (322)
Q Consensus 52 ~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~-GCP~~~v~~~g~ 93 (322)
.+..=.+|+...+.-+--.+.|.|.|--|- ++-..+..+.|.
T Consensus 38 ~~~ll~~Pd~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~ 80 (308)
T PRK09485 38 AKVLLENPELIYQVHLDYFRAGADIAITASYQATFQGFAARGL 80 (308)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCC
T ss_conf 6666119299999999999808787872455037898987499
No 257
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.91 E-value=0.55 Score=27.05 Aligned_cols=189 Identities=12% Similarity=0.111 Sum_probs=93.4
Q ss_pred HHHHHHHHH---CCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCE
Q ss_conf 899999982---89829981----70332477608978983----02745784699982699899999887531045377
Q gi|254781167|r 8 HYRFFARLL---TNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNE 76 (322)
Q Consensus 8 ~fR~l~r~~---~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~ 76 (322)
.+|++++.+ |.++++.. |+.+ |....+++++ +.....-|+++...+++..+..+-++..++.|+|.
T Consensus 30 ~l~~lv~~li~~Gv~gl~~~GttGE~~~---Ls~~Er~~v~~~~~e~~~gr~pvi~G~~~~~t~~ai~~a~~a~~~Gad~ 106 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECAT---LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADG 106 (309)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHH---CCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999769998997923500434---8799999999999998389850996057505999999999998469899
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEE---EECCCCCCCCCCCHHHHHHHHCCCCCCHH-
Q ss_conf 744256413677666889999855899999999985027-9069998---61134566532201455432000122012-
Q gi|254781167|r 77 INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVK---CRIGVDDQIPAVALRNLVKSIKKSGVNGI- 151 (322)
Q Consensus 77 idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK---~RlG~~~~~~~~~~~~~~~~~~~~g~~~i- 151 (322)
+=+ -+|.- .--+++-+.+-.+++.+++ ++||-+= -|.|.+- +. +.+..+.+ +..|
T Consensus 107 ~lv--~~P~y----------~~~~~~~l~~~~~~ia~a~~~lPiilYn~P~~tg~~l--~~----~~~~~La~--~pniv 166 (309)
T cd00952 107 TML--GRPMW----------LPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDF--PR----AAWAELAQ--IPQVV 166 (309)
T ss_pred EEE--CCCCC----------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--CH----HHHHHHHC--CCCEE
T ss_conf 998--88858----------8999999999999999867899889996864001578--99----99999955--99989
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 10013566402577421227661046787666738875302577778998988874-20352344122000124399999
Q gi|254781167|r 152 WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 152 tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~I~ 230 (322)
.| |+ .+. +...+..+....+...+....| +.--+..+. .+++|+..+-+ .-.|....++-
T Consensus 167 gv------------K~---s~~-~~~~~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~g~~g~~s~~a-~~~P~~~~~l~ 227 (309)
T cd00952 167 AA------------KY---LGD-IGALLSDLAAVKGRMRLLPLED--DYYAAARLFPEEVTAFWSSGA-ACGPAPVTALR 227 (309)
T ss_pred EE------------EE---CCC-CHHHHHHHHHHCCCCEEEECCH--HHHHHHHHHCCCCEEEEEEEE-HHHHHHHHHHH
T ss_conf 99------------93---788-3679999998289944974552--678899987077849998415-04279999999
Q ss_pred HHHCCCCC
Q ss_conf 98719988
Q gi|254781167|r 231 EYFSNPLT 238 (322)
Q Consensus 231 ~~l~~~~~ 238 (322)
+.+..+..
T Consensus 228 ~a~~~Gd~ 235 (309)
T cd00952 228 DAVATGDW 235 (309)
T ss_pred HHHHCCCH
T ss_conf 99987899
No 258
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.89 E-value=0.3 Score=28.97 Aligned_cols=139 Identities=11% Similarity=0.156 Sum_probs=79.2
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 82699899999887531045377744256413677666889999855899999999985027906999861134566532
Q gi|254781167|r 54 IGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPA 133 (322)
Q Consensus 54 l~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~ 133 (322)
|-..|++.+.+-|+.-.+.|++.+|+|+|=|. ...++.+..++..+..++++|+++-. .+.
T Consensus 20 i~~~d~~~i~~~A~~Q~~~GA~~LDVN~g~~~------------~de~~~M~~~v~~vq~~~~~Pl~iDS-------~~~ 80 (252)
T cd00740 20 IKAEDYDEALDVARQQVEGGAQILDLNVDYGG------------LDGVSAMKWLLNLLATEPTVPLMLDS-------TNW 80 (252)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEECCCCCC------------CCHHHHHHHHHHHHHCCCCCCEEEEC-------CCH
T ss_conf 98579899999999999849988995289645------------36599999999998547899857617-------989
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC----CCCCCCCHHHHHH----
Q ss_conf 20145543200012201210013566402577421227661046787666738875302----5777789989888----
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIG----LNGGLEDMSQALK---- 205 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~----~NGdi~~~~~a~~---- 205 (322)
+. .++|.+ ...|| .+.+..|.+ .|+-+++.+..+.+...-..|. -+|=-.|.++-.+
T Consensus 81 ----~~----iEaaLk--~~~Gr-~iINSis~e----~g~er~~~i~pLakkyga~vI~L~~de~Gip~t~e~R~~ia~~ 145 (252)
T cd00740 81 ----EV----IEAGLK--CCQGK-CVVNSINLE----DGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAER 145 (252)
T ss_pred ----HH----HHHHHH--HCCCC-EEEECCCCC----CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf ----99----999999--76998-677416344----5488999999999870998999952899998999999999999
Q ss_pred HHHCCCC-EEE-ECCCCCHHHHH
Q ss_conf 7420352-344-12200012439
Q gi|254781167|r 206 ILPSVDG-VMI-GRAAYKNSAML 226 (322)
Q Consensus 206 ~l~~~dg-vMi-gRga~~~P~if 226 (322)
.++.+.. .-| -.-++-+|-+|
T Consensus 146 i~~~~~~~~Gi~~edI~~DpLv~ 168 (252)
T cd00740 146 AYEALTEFVGFPPEDIIFDPLIL 168 (252)
T ss_pred HHHHHHHHCCCCHHHEEEECCHH
T ss_conf 99999985699889978866357
No 259
>PRK06857 consensus
Probab=92.88 E-value=0.26 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=32.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCH
Q ss_conf 5784699982699899999887531045377744256413
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPS 85 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~ 85 (322)
.+.+++.=+-+.+++...+.++-+.+-|+..|++-+--|.
T Consensus 10 ~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~ 49 (209)
T PRK06857 10 RALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSAA 49 (209)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9799799997599999999999999879988999589932
No 260
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390 This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP) is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=92.85 E-value=0.48 Score=27.49 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC---CC--EEEEEEEECCCCCC
Q ss_conf 9989999988753104537774425641367766688-999985589999999998502---79--06999861134566
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSF-GACLMLNPDIVGDCIAAMCKA---LS--IPVTVKCRIGVDDQ 130 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~-GaaLl~~p~~~~~iv~~~~~~---~~--~pvsvK~RlG~~~~ 130 (322)
.+++...+.|+..-+.|.++|||== ..++-|+ .-.==...++|..+|+++++. .+ +||||=|+=
T Consensus 20 ~~~~~A~~~a~~m~~~GA~IiDiGG-----eSTRPG~~~vs~~eE~~Rv~Pv~~~~~~~~~~~dQC~~iSvDT~~----- 89 (268)
T TIGR01496 20 LSVDKALEHAERMLEEGADIIDIGG-----ESTRPGADRVSPEEELNRVVPVIKALREQYLFSDQCVPISVDTYR----- 89 (268)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-----
T ss_conf 6778999999999973998896577-----057976987897999998899999999744899984147761882-----
Q ss_pred CCCCCHHHHHHHHCCC-CCCHH
Q ss_conf 5322014554320001-22012
Q gi|254781167|r 131 IPAVALRNLVKSIKKS-GVNGI 151 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~-g~~~i 151 (322)
.+.++.+.++ |++.|
T Consensus 90 ------a~Va~~Al~~~Ga~ii 105 (268)
T TIGR01496 90 ------AEVARAALEAFGADII 105 (268)
T ss_pred ------HHHHHHHHHHCCCCEE
T ss_conf ------8999999986798678
No 261
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=92.84 E-value=0.47 Score=27.59 Aligned_cols=70 Identities=30% Similarity=0.368 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEE
Q ss_conf 1455432000122012100135664025774212276610467876667388753025777789989888742-035234
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVM 214 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvM 214 (322)
-.+=+..|.++|+|.|.|- | -+|.| .. -.+.|+++|+..|++.|| -|+|-|.+.|..+.+ +||||=
T Consensus 240 D~~R~~~L~~AGvDv~viD--s--shGhs------~~--vl~~ik~~k~~Yp~~~ii-aGNVaT~~~a~~LI~AgADg~r 306 (476)
T TIGR01302 240 DLERAEALVEAGVDVIVID--S--SHGHS------IY--VLDSIKKIKKTYPDLDII-AGNVATAEQAKALIDAGADGLR 306 (476)
T ss_pred CHHHHHHHHHCCCCEEEEE--C--CCCCC------HH--HHHHHHHHHHHCCEEEEE-ECCCCCHHHHHHHHHCCCCEEE
T ss_conf 1899999996596589981--6--65453------78--999999998638805799-4344117889889852888789
Q ss_pred EECC
Q ss_conf 4122
Q gi|254781167|r 215 IGRA 218 (322)
Q Consensus 215 igRg 218 (322)
||=|
T Consensus 307 VGiG 310 (476)
T TIGR01302 307 VGIG 310 (476)
T ss_pred ECCC
T ss_conf 8368
No 262
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=92.80 E-value=0.61 Score=26.76 Aligned_cols=144 Identities=17% Similarity=0.292 Sum_probs=98.3
Q ss_pred CCEEEEEECCCH-------HHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCC
Q ss_conf 846999826998-------99999887531045377--7442564136776668899998558999999--999850279
Q gi|254781167|r 48 KPLALQIGGADI-------SKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDC--IAAMCKALS 116 (322)
Q Consensus 48 ~p~~~Ql~g~~p-------~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~i--v~~~~~~~~ 116 (322)
--+++-|.+|.. ..+...++-.-..|+|. |=+|.|-- .+++.+.++ |.+..+..+
T Consensus 71 ~GlIvHLsAST~L~P~p~~K~~~~tVE~Ai~~GADAVS~HvNvGs~--------------~e~d~~~~lg~vA~~ad~~G 136 (259)
T TIGR01949 71 AGLIVHLSASTSLSPDPNDKRIVTTVEDAIRLGADAVSIHVNVGSD--------------TEADQIEDLGDVAEIADDWG 136 (259)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEECHHHHHHCCCCEEEEEEECCCC--------------CCHHHHHHHHHHHHHHHHCC
T ss_conf 6999860454325888878757851489973289867998864898--------------73899999989999886548
Q ss_pred EEEEEEE--E-CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 0699986--1-134566532201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 117 IPVTVKC--R-IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 117 ~pvsvK~--R-lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
+|+=.=+ | -+.+++.+.+..---+|.-.|-|+|.|=+ -|+|. .+.+.++.+.-+.|+|++
T Consensus 137 vPlLAMmYaRG~~i~~e~d~~~v~HAaRlg~ElGADvvK~---------------~Y~Gd--~~SF~~VV~~c~~PVvvA 199 (259)
T TIGR01949 137 VPLLAMMYARGPRIDDEVDPEVVAHAARLGEELGADVVKV---------------PYTGD--IDSFEEVVKACAVPVVVA 199 (259)
T ss_pred CCHHECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---------------CCCCC--HHHHHHHHCCCCCCEEEE
T ss_conf 8420112788688766447678888876535345776651---------------43177--467999962178777873
Q ss_pred CCCC-CCHHHHHHHH-----HCCCCEEEECCCCCH
Q ss_conf 7777-8998988874-----203523441220001
Q gi|254781167|r 194 NGGL-EDMSQALKIL-----PSVDGVMIGRAAYKN 222 (322)
Q Consensus 194 NGdi-~~~~~a~~~l-----~~~dgvMigRga~~~ 222 (322)
=|+= .|-++.+.+. .|+.||-+||-++..
T Consensus 200 GG~k~~s~~efLq~v~DA~~aGAAGvs~GRnvFqh 234 (259)
T TIGR01949 200 GGPKLASDREFLQMVKDAMEAGAAGVSVGRNVFQH 234 (259)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCC
T ss_conf 77798874677788999998187823105630146
No 263
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=92.78 E-value=0.88 Score=25.56 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHCCCEEEECCCCCCH----HHHCCCHHHHHHCCCCCCCEEEEEECC-CHHHHHHHHHHHHCCCCCEE
Q ss_conf 7860789999998289829981703324----776089789830274578469998269-98999998875310453777
Q gi|254781167|r 3 DWTDRHYRFFARLLTNNALLYTEMIVAD----AILRGDKKNILGFSTQEKPLALQIGGA-DISKLVEAAKIVEDFGYNEI 77 (322)
Q Consensus 3 g~Td~~fR~l~r~~~~~~~~~TEmi~a~----~l~~~~~~~~~~~~~~e~p~~~Ql~g~-~p~~~~~aa~~~~~~g~~~i 77 (322)
|.|+.-==..|..+|++- + -||... -+.....+.+.+..+.. +..+=+|-+ +++++. +++...++|.|
T Consensus 5 Git~~~d~~~~~~~g~d~-i--Gfif~~~SpR~i~~~~a~~l~~~~~~~-~~~V~Vfvn~~~~~i~---~~~~~~~~d~v 77 (203)
T cd00405 5 GITTLEDALAAAEAGADA-I--GFIFAPKSPRYVSPEQAREIVAALPPF-VKRVGVFVNEDLEEIL---EIAEELGLDVV 77 (203)
T ss_pred CCCCHHHHHHHHHCCCCE-E--EEECCCCCCCEECHHHHHHHHHHCCCC-CEEEEEEECCCHHHHH---HHHHHCCCCEE
T ss_conf 889599999998579998-9--885569989711899999999736998-5399999168399999---99987699889
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 44256413677666889999855899999999985027906999861134566532201455432000122012100135
Q gi|254781167|r 78 NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK 157 (322)
Q Consensus 78 dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt 157 (322)
-|.-.- +++. +..+++..++|+.--++++-+. . .+.++.. ...++.+-+-...
T Consensus 78 QlHG~e----------------~~~~----~~~lk~~~~~~iikai~v~~~~-----~-~~~~~~~-~~~~d~~L~Ds~~ 130 (203)
T cd00405 78 QLHGDE----------------SPEY----CAQLRARLGLPVIKAIRVKDEE-----D-LEKAAAY-AGEVDAILLDSKS 130 (203)
T ss_pred EECCCC----------------CHHH----HHHHHHHCCCEEEEEECCCCHH-----H-HHHHHHH-CCCCCEEEEECCC
T ss_conf 987899----------------9799----9998750596499996149777-----7-9999874-3777589996888
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHH
Q ss_conf 66402577421227661046787666738875302577778998988874--20352344122000124
Q gi|254781167|r 158 AILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~ 224 (322)
.-+.|-+++ ..||+.+..+. ...|++.-|||. ++...+.+ .+..||=+..|.-.+|-
T Consensus 131 ~~~~GGtG~------~fdw~~l~~~~---~~~p~~LAGGl~-~~NV~~ai~~~~p~gvDvsSgvE~~pG 189 (203)
T cd00405 131 GGGGGGTGK------TFDWSLLRGLA---SRKPVILAGGLT-PDNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred CCCCCCCCC------EECHHHHHHCC---CCCCEEEECCCC-HHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 876887765------33889986212---479879977889-889999998509989997670157899
No 264
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=92.77 E-value=0.094 Score=32.73 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHCCCCCCHHHHH------HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---------CCCCCCCCCCCC
Q ss_conf 2201455432000122012100------1356640257742122766104678766673---------887530257777
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIH------ARKAILKGLSPKDNRKIPNLDYDIVYEIKKE---------NPDLFIGLNGGL 197 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH------~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~---------~~~~~i~~NGdi 197 (322)
+..+.+-++.+.++|+|.|-|= |-||+.-|.+ -.....|.++.+. ...+|||+-|+|
T Consensus 193 NVaT~e~a~~Li~aGADaVKVGIGpGSICTTRvVaGvG--------vPQltAI~~~a~a~~~y~~~~~g~~VpvIADGGI 264 (368)
T PRK08649 193 GCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG--------VPMATAIADCAAARRDYLDETGGRYVHVIADGGI 264 (368)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEECCC--------CHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 44699999999977998999456688775663401257--------2169999999999886556526854648956885
Q ss_pred CCHHHHHHHH-HCCCCEEEECC
Q ss_conf 8998988874-20352344122
Q gi|254781167|r 198 EDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 198 ~~~~~a~~~l-~~~dgvMigRg 218 (322)
+..=|+.+.+ -|+|.||+|.-
T Consensus 265 r~sGDi~KAlaaGA~~VMlGsl 286 (368)
T PRK08649 265 VTSGDICKAIACGADAVMLGSP 286 (368)
T ss_pred CCCCHHHHHHHCCCCEEEECCC
T ss_conf 8641899998728998987731
No 265
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=92.73 E-value=0.89 Score=25.52 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=45.0
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
...++++.+.++|+|.+.|+.-...-. +........ + +.+.++.+ +++|+ -|+|-|.+-|..+.+ |+|+|
T Consensus 141 ~~~~~~~~Lv~aGvDvlvId~~vvd~a----H~~~~~~~l--~-~~~~~~~~-~v~vI-aGNVaT~e~a~~Li~aGADaV 211 (368)
T PRK08649 141 NAQKLGPTVVEAGADLFVIQGTVVSAE----HVSEGGEPL--N-LKEFIYEL-DVPVV-VGGCVTYTTALHLMRTGAAGV 211 (368)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEEH----HHCCCCHHH--H-HHHHHCCC-CCCEE-EECCCCHHHHHHHHHCCCCEE
T ss_conf 389999999974998899841475402----220320356--5-66431237-98789-734469999999997799899
Q ss_pred EEECC
Q ss_conf 44122
Q gi|254781167|r 214 MIGRA 218 (322)
Q Consensus 214 MigRg 218 (322)
-+|-|
T Consensus 212 KVGIG 216 (368)
T PRK08649 212 LVGIG 216 (368)
T ss_pred EECCC
T ss_conf 94566
No 266
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.62 E-value=0.44 Score=27.80 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=9.6
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 20145543200012201210013
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~itiH~R 156 (322)
+.+...++.+.+.|...|.+--|
T Consensus 136 ~~~~~a~eki~~~Gn~~i~l~ER 158 (250)
T PRK13397 136 EEYLGALSYLQDTGKSNIILCER 158 (250)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999999999659982899828
No 267
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.55 E-value=0.32 Score=28.80 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCH
Q ss_conf 5784699982699899999887531045377744256413
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPS 85 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~ 85 (322)
.+.|++.=+-+.|++...+.++.+.+-|+..|++-+--|.
T Consensus 13 ~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~ 52 (212)
T PRK06015 13 KGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPA 52 (212)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 8799799997799999999999999879988999689951
No 268
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=92.43 E-value=0.51 Score=27.34 Aligned_cols=88 Identities=25% Similarity=0.328 Sum_probs=53.6
Q ss_pred CHHHHHHHHCCCCCCHHHHHHH---HHHHHCCCCC----CCCCCCCCH------HHHHHHHHHHCC-CCCCCC--C----
Q ss_conf 0145543200012201210013---5664025774----212276610------467876667388-753025--7----
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHAR---KAILKGLSPK----DNRKIPNLD------YDIVYEIKKENP-DLFIGL--N---- 194 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~R---t~~~~g~s~~----~~~~~~~~~------~~~i~~l~~~~~-~~~i~~--N---- 194 (322)
.+.+-++++.++|.|.|-||+= --..|.+||. .+.|-|... -+.+.++++.++ +.||+. |
T Consensus 151 ~f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~~ 230 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999999998499989962453035899854873589886458987885618999999999970988738999656334
Q ss_pred ------CC---------CCCHHHHHH---HH--HCCCCEEEECCCCCH
Q ss_conf ------77---------789989888---74--203523441220001
Q gi|254781167|r 195 ------GG---------LEDMSQALK---IL--PSVDGVMIGRAAYKN 222 (322)
Q Consensus 195 ------Gd---------i~~~~~a~~---~l--~~~dgvMigRga~~~ 222 (322)
|. ..+.++... .+ .|+|.+-+..|.+..
T Consensus 231 ~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~ 278 (382)
T cd02931 231 IKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDA 278 (382)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 566545788577788876359999999999998398889647774211
No 269
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=92.42 E-value=0.89 Score=25.54 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCC
Q ss_conf 9989999988753104537774425641367766688999985589999999998502790699986113456--65322
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDD--QIPAV 134 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~--~~~~~ 134 (322)
.......++++.+.+.|.+.|++=+.+ ++.-.+...|...-+..+.+.++++..++ .+++|. .|..+ ..+.+
T Consensus 64 ~~~~~~~~~~e~~~~~g~~~i~i~~~~-se~~~~~n~~~s~~~~l~~~~~~i~~a~~-~g~~v~----f~~~~~~~~~~~ 137 (237)
T pfam00682 64 PVEHDIDAAVEAAKGAGADRVHVFIAT-SDLHRKYKLNKDREEVADRAVAAVEAARS-AGIDVE----LGCEDAGRTDLA 137 (237)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEEC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH-CCCEEE----EEECCCCCCCHH
T ss_conf 341049999999996799999996105-78789988578999999999999999998-699058----840512324788
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 01455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
.+.++++.+.+.|++.|++===+ +...| .-=++.+..+++.+|++++..
T Consensus 138 ~~~~~~~~~~~~G~~~i~l~DT~---G~~~P-------~~v~~lv~~l~~~~~~~~i~~ 186 (237)
T pfam00682 138 FLIEVVEVAQEAGATRINIADTV---GVLTP-------NEAADLISALKDRVPPVIIEV 186 (237)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC---CCCCH-------HHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999999986198579736864---55798-------999999999997089871588
No 270
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.39 E-value=0.2 Score=30.29 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=86.3
Q ss_pred CCCCCCEEEEE---ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEE
Q ss_conf 74578469998---2699899999887531045377744256413677666889999855899999999985027-9069
Q gi|254781167|r 44 STQEKPLALQI---GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPV 119 (322)
Q Consensus 44 ~~~e~p~~~Ql---~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pv 119 (322)
.-.+-|+.+-+ ||+ |...++.++.+++.|..+|.|-=-- .||-+..-.|-.| -+++...+-+++.+++. +.++
T Consensus 75 ~a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~-~pk~cgh~~gk~l-~~~~e~v~rIkAa~~a~~~~~f 151 (289)
T COG2513 75 DAVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQV-GPKRCGHLPGKEL-VSIDEMVDRIKAAVEARRDPDF 151 (289)
T ss_pred HHCCCCEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEECC-CCHHCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCE
T ss_conf 65278768865678873-8899999999997586266453225-5021278889876-7899999999999971558885
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-----
Q ss_conf 998611345665322014554320001220121001356640257742122766104678766673887530257-----
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN----- 194 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N----- 194 (322)
.+-=|.----...-+..++-++..+++|+|.|..++.+ +-+-+.++.++++ .|+..|
T Consensus 152 vi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------------~~e~i~~f~~av~-~pl~~N~t~~g 213 (289)
T COG2513 152 VIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------------DLEEIRAFAEAVP-VPLPANITEFG 213 (289)
T ss_pred EEEEEHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCC-----------------CHHHHHHHHHHCC-CCCEEEEECCC
T ss_conf 99961487775247999999999997597687136679-----------------9999999998468-77026863248
Q ss_pred -CCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf -77789989888742035234412
Q gi|254781167|r 195 -GGLEDMSQALKILPSVDGVMIGR 217 (322)
Q Consensus 195 -Gdi~~~~~a~~~l~~~dgvMigR 217 (322)
....+.++-.+ -|+.-|..|=
T Consensus 214 ~tp~~~~~~L~~--~Gv~~V~~~~ 235 (289)
T COG2513 214 KTPLLTVAELAE--LGVKRVSYGL 235 (289)
T ss_pred CCCCCCHHHHHH--CCCEEEEECC
T ss_conf 988768999996--6964999784
No 271
>pfam01188 MR_MLE Mandelate racemase / muconate lactonizing enzyme, C-terminal domain. C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain.
Probab=92.34 E-value=0.6 Score=26.81 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCCCCCCCCCH
Q ss_conf 8999998875310453777442564136776668899998558999999999850279--06999861134566532201
Q gi|254781167|r 59 ISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS--IPVTVKCRIGVDDQIPAVAL 136 (322)
Q Consensus 59 p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~~~~~~~~ 136 (322)
|+.+++.|+...+.||..+-+-+|.+. ++.-.+.+++++++++ +.+.+=.--|| +....
T Consensus 1 Pe~~~~~a~~~~~~Gf~~~Kik~g~~~---------------~~~d~~~i~~ir~~~g~~~~l~vD~n~~~----~~~~A 61 (98)
T pfam01188 1 PEELAAEAEEAVEAGFRAFKLKIGRGD---------------LADDLARVAAVREAVGDDVRLRVDANQAW----DVATA 61 (98)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCC---------------HHHHHHHHHHHHHHCCCCCEEEECCCCCC----CHHHH
T ss_conf 989999999999879987997448999---------------99999999999997599987987586543----79999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 455432000122012100135664025774212276610467876667388
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP 187 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~ 187 (322)
..+++.+++.|+.++= ...++-|++..++|++..+
T Consensus 62 ~~~~~~l~~~~~~~~E----------------eP~~~~d~~~~~~l~~~~~ 96 (98)
T pfam01188 62 IRLARALEELGLTWIE----------------EPLPADDIEGLARLRRALD 96 (98)
T ss_pred HHHHHHHCCCCCEEEE----------------CCCCCCCHHHHHHHHHHCC
T ss_conf 9999873257956997----------------9899999999999998578
No 272
>KOG2550 consensus
Probab=92.33 E-value=0.16 Score=30.96 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=49.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEE
Q ss_conf 5543200012201210013566402577421227661046787666738875302577778998988874-203523441
Q gi|254781167|r 138 NLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIG 216 (322)
Q Consensus 138 ~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMig 216 (322)
+-+..+..+|++.|.+. .-||.|- -..+.|+-+|+.+|++.|+ -|++.+.+.|.... .|+||+=||
T Consensus 254 ~rl~ll~~aGvdvviLD----SSqGnS~--------~qiemik~iK~~yP~l~Vi-aGNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550 254 ERLDLLVQAGVDVVILD----SSQGNSI--------YQLEMIKYIKETYPDLQII-AGNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHHHHHHCCCCEEEEE----CCCCCCH--------HHHHHHHHHHHHCCCCEEE-CCCEEEHHHHHHHHHCCCCEEEEC
T ss_conf 77888663488689996----6888504--------5799999998668886343-165533888999987367605752
Q ss_pred CC
Q ss_conf 22
Q gi|254781167|r 217 RA 218 (322)
Q Consensus 217 Rg 218 (322)
=|
T Consensus 321 MG 322 (503)
T KOG2550 321 MG 322 (503)
T ss_pred CC
T ss_conf 55
No 273
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=92.29 E-value=0.65 Score=26.53 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 455432000122012100135664025774212276610467876667388753025777789989888742-0352344
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
+-+++.++++||..|-=-|-- +=.| .|-.+...++.+.+.. ++|++.--||-++.||...++ |||||++
T Consensus 209 pv~akrLed~Gc~avMPlgsP-IGSg--------~Gi~n~~~i~~i~e~~-~vpvivDAGiG~pS~A~~aMElG~daVL~ 278 (327)
T PRK11840 209 PIAAKRLEDAGAVAVMPLGAP-IGSG--------LGIQNPYTIRLIVEGA-KVPVLVDAGVGTASDAAVAMELGCDGVLM 278 (327)
T ss_pred HHHHHHHHHCCCEEEEECCCC-CCCC--------CCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEH
T ss_conf 689999987598388622452-3478--------8868999999999736-99789957989878999998636666663
Q ss_pred ECCC
Q ss_conf 1220
Q gi|254781167|r 216 GRAA 219 (322)
Q Consensus 216 gRga 219 (322)
-.++
T Consensus 279 NTAi 282 (327)
T PRK11840 279 NTAI 282 (327)
T ss_pred HHHH
T ss_conf 3676
No 274
>PRK07695 transcriptional regulator TenI; Provisional
Probab=92.11 E-value=0.31 Score=28.96 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=57.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEEC
Q ss_conf 543200012201210013566402577421227661046787666738875302577778998988874-2035234412
Q gi|254781167|r 139 LVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGR 217 (322)
Q Consensus 139 ~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigR 217 (322)
-+..++..|+|.+.+=+= +.-.| |.. .++.-|+.+.++.+.. .+|+++-|||+. +++...+ .|+|||-+-+
T Consensus 107 e~~~a~~~gaDYi~~Gpi---f~T~t-K~~--~~~~G~~~l~~~~~~~-~iPvvAIGGI~~-~ni~~v~~~Ga~giAvis 178 (202)
T PRK07695 107 EAIQAEKNGADYVVYGHV---FPTDC-KKG--VPARGLEELSEIARAL-SIPVIAIGGITP-ENTRDVLAAGVSGIAVMS 178 (202)
T ss_pred HHHHHHHCCCCEEEECCC---CCCCC-CCC--CCCCCHHHHHHHHHHC-CCCEEEECCCCH-HHHHHHHHCCCCEEEEHH
T ss_conf 999997769996997254---12688-889--8878999999999867-999899869899-999999982999999718
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2000124399999
Q gi|254781167|r 218 AAYKNSAMLTTVD 230 (322)
Q Consensus 218 ga~~~P~if~~I~ 230 (322)
+++..+-....++
T Consensus 179 ~I~~a~dp~~~~~ 191 (202)
T PRK07695 179 GIFSSSNPYSKAK 191 (202)
T ss_pred HHHCCCCHHHHHH
T ss_conf 9776999999999
No 275
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=91.97 E-value=1.1 Score=24.87 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 89999999998502790699986113
Q gi|254781167|r 101 PDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 101 p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
|+.+...++.+.+..++||||.=-.|
T Consensus 255 p~~m~~~v~~l~~~~~~pisv~PNAG 280 (1229)
T PRK09490 255 ADELRPYVEELSRIADTYVSAHPNAG 280 (1229)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 89999999999842897779726898
No 276
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.94 E-value=1 Score=25.03 Aligned_cols=191 Identities=21% Similarity=0.228 Sum_probs=107.5
Q ss_pred HHHHHHHHHH---CCCEEEECCCCC-CHHHHCCCHHHHHH----CCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7899999982---898299817033-24776089789830----274578469998269989999988753104537774
Q gi|254781167|r 7 RHYRFFARLL---TNNALLYTEMIV-ADAILRGDKKNILG----FSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 7 ~~fR~l~r~~---~~~~~~~TEmi~-a~~l~~~~~~~~~~----~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
-.+|++++.+ |.++++..-..- ...|....++++++ ....--|++++..+++.++..+-++.+++.|+|.|=
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999849988997986657221699999999999999968977789862877799999999999970999999
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCCCCCCCCHHHHHHHHCCCCCCH-HHHH
Q ss_conf 425641367766688999985589999999998502790699986---113456653220145543200012201-2100
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC---RIGVDDQIPAVALRNLVKSIKKSGVNG-IWIH 154 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~---RlG~~~~~~~~~~~~~~~~~~~~g~~~-itiH 154 (322)
+= .| .-.+ .+++-+.+-.+++.+++++|+-+== |.|.+- ..+.+..+.+ ... +-|
T Consensus 105 ~v--~P--yY~k--------~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l------~~e~i~~la~--~~nivgi- 163 (299)
T COG0329 105 VV--PP--YYNK--------PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDL------SPETIARLAE--HPNIVGV- 163 (299)
T ss_pred EE--CC--CCCC--------CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------CHHHHHHHHC--CCCEEEE-
T ss_conf 84--89--7889--------8979999999999985189989997875248999------9999999827--8988999-
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 1356640257742122766104678766673887-53025777789989888-742035234412200012439999998
Q gi|254781167|r 155 ARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALK-ILPSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 155 ~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~-~l~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
|+ ..+ |.+.+.++....++ -.++.+|+= +.+.. +.-|++|+..+-+ --.|..+.++-+.
T Consensus 164 -----------Kd--~~g--d~~~~~~~~~~~~~~~f~v~~G~d---~~~~~~~~~G~~G~is~~~-N~~p~~~~~l~~~ 224 (299)
T COG0329 164 -----------KD--SSG--DLDRLEEIIAALGDRDFIVLSGDD---ELALPALLLGADGVISVTA-NVAPELAVELYRA 224 (299)
T ss_pred -----------EE--CCC--CHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHHCCCCEEEECCC-HHCHHHHHHHHHH
T ss_conf -----------84--788--999999999864876628982665---8888998677985884100-1279999999999
Q ss_pred HCCCC
Q ss_conf 71998
Q gi|254781167|r 233 FSNPL 237 (322)
Q Consensus 233 l~~~~ 237 (322)
+..+.
T Consensus 225 ~~~g~ 229 (299)
T COG0329 225 AKAGD 229 (299)
T ss_pred HHCCC
T ss_conf 98789
No 277
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=91.91 E-value=0.24 Score=29.73 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=85.0
Q ss_pred EECCCHHHHHHHHHHHH-C-CCCC-EEEECCCCCHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 82699899999887531-0-4537-774425641367766688999--98----55899999999985027906999861
Q gi|254781167|r 54 IGGADISKLVEAAKIVE-D-FGYN-EINLNVGCPSARVHEGSFGAC--LM----LNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 54 l~g~~p~~~~~aa~~~~-~-~g~~-~idlN~GCP~~~v~~~g~Gaa--Ll----~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
-|+++.+.+.++-+.+. + +.-| +|| |-.--..+-.||. || -+++.+.++++...+ .+..+-|-+.
T Consensus 95 ~F~Gsl~dL~~vr~~v~lPvLRKDFIvD-----~yQI~EAr~~GADaILLIva~L~~~~L~~l~~~a~~-LGm~~LVEVH 168 (695)
T PRK13802 95 KFLGSLDDFDKVRAAVHIPVLRKDFIVT-----DYQIFEARAHGADLVLLIVAALDDAQLKHLLDLAHE-LNMTVLVETH 168 (695)
T ss_pred CCCCCHHHHHHHHHHCCCCEEECCEECC-----HHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHH-CCCEEEEEEC
T ss_conf 6798999999999858998570233063-----999999998287889999986699999999999998-6991799978
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHH
Q ss_conf 1345665322014554320001220121001356640257742122766104678766673887-530257777899898
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQA 203 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a 203 (322)
+. .|+ +++.++|++.|-|-.|. ..+...|.+...++...+|. ...+.-.+|.+++|+
T Consensus 169 -------~~---~El-~rAl~~ga~iIGINnRn-----------L~Tf~vD~~~~~~Lap~iP~~~v~VAESGI~~~~Dv 226 (695)
T PRK13802 169 -------TR---EEI-ERARKAGAKVIGINARN-----------LKNLKVDVNKYNELAADLPDDVIKVAESGVFGAVEV 226 (695)
T ss_pred -------CH---HHH-HHHHHCCCCEEEEECCC-----------CCCCEECHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf -------99---999-99984799989987898-----------864228779999998468998579956899998999
Q ss_pred HHHH-HCCCCEEEECCCCCHHH
Q ss_conf 8874-20352344122000124
Q gi|254781167|r 204 LKIL-PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 204 ~~~l-~~~dgvMigRga~~~P~ 224 (322)
.++. .|+|+|+||-+..-.|-
T Consensus 227 ~~~a~aGadAvLVGEalvta~d 248 (695)
T PRK13802 227 EDYARAGADAVLVGEGVATADN 248 (695)
T ss_pred HHHHHCCCCEEEECCHHHCCCC
T ss_conf 9999779999997803415898
No 278
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=91.90 E-value=0.54 Score=27.11 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 99899999887531045377744256413677666889-9998558999999999850279069998611
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFG-ACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G-aaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+++...+.++.+.+.|+|.|||- ||. ++.|+. -.--...+++..+++++++..++||||-++-
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIG-geS----TrPga~~vs~eeE~~Rl~pvi~~i~~~~~v~iSIDT~~ 99 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVG-GES----TRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSK 99 (282)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC-CCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 899999999999998899699979-825----89989868989999999999999997359729997998
No 279
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=91.84 E-value=0.6 Score=26.80 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=50.4
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHH--HHHCCCC----CCCCCCCCCH------HHHHHHHHHHCC-CCCCCC--CC----
Q ss_conf 014554320001220121001356--6402577----4212276610------467876667388-753025--77----
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKA--ILKGLSP----KDNRKIPNLD------YDIVYEIKKENP-DLFIGL--NG---- 195 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~--~~~g~s~----~~~~~~~~~~------~~~i~~l~~~~~-~~~i~~--NG---- 195 (322)
.+.+-++++.++|.|.|-||+=.. ..|.+|| |.+.|-|... .+.+.+++++++ +.+|+. |+
T Consensus 155 ~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999999998399999863137479998369411677786799789998899999999999839988706896452357
Q ss_pred -CCCCHHHHHHH---HH--CCCCEEEECCC
Q ss_conf -77899898887---42--03523441220
Q gi|254781167|r 196 -GLEDMSQALKI---LP--SVDGVMIGRAA 219 (322)
Q Consensus 196 -di~~~~~a~~~---l~--~~dgvMigRga 219 (322)
+-.+.+|+... ++ |+|-+=+..|.
T Consensus 235 ~~g~~~~e~~~~a~~l~~~gvd~i~vs~G~ 264 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGG 264 (336)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 899899999999999997599789955898
No 280
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=91.83 E-value=0.94 Score=25.37 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99899999887531045377744256413677666889-99985589999999998502790699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFG-ACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G-aaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
.+++.+.+.|+...+.|+|.|||+.--- +.|++ -.--.+.+++..+++++++ .++||||-++-
T Consensus 16 ~~~~~a~~~a~~~i~~GAdiIDIG~eST-----rPga~~v~~~eE~~Rl~pvl~~l~~-~~~~iSIDT~~---------- 79 (208)
T pfam00809 16 LSPDKALEQAREMVEEGADIIDIGGEST-----RPGAGMVSGEEELERLVPVLEALRD-QDVPISIDTFN---------- 79 (208)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEEECCC----------
T ss_conf 8999999999999987998998689768-----9998646889999999999998635-79828997984----------
Q ss_pred HHHHHHHHCCCCCCHHH
Q ss_conf 14554320001220121
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIW 152 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~it 152 (322)
.+.++.+.++|++.|-
T Consensus 80 -~~v~~~al~~G~~iIN 95 (208)
T pfam00809 80 -AEVAEAALKAGADIIN 95 (208)
T ss_pred -HHHHHHHHHCCCCEEE
T ss_conf -9999999981993898
No 281
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=91.82 E-value=0.43 Score=27.89 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHH
Q ss_conf 12201210013566402577421227661046787666738875302577778998988874-20352344122000124
Q gi|254781167|r 146 SGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 146 ~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~ 224 (322)
.|-..+++-.+. +.. ..++ -+.+ +.++...+++++.-|||+|.++|.+++ .|+|-|-+|-.+..+|-
T Consensus 152 ~g~~~iYLEaGS-------Ga~-~~vp---~~vi-~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~d 219 (231)
T pfam01884 152 LGMRIFYLEAGS-------GAP-GPVP---EEVI-AVKKVLDDARLIVGGGIKSGEKAKEMARAGADVIVTGNVIEEKGD 219 (231)
T ss_pred CCCCEEEEECCC-------CCC-CCCC---HHHH-HHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEEECCC
T ss_conf 098189997589-------999-9989---9999-999646897689969979999999999779999997971441776
Q ss_pred HHHHH
Q ss_conf 39999
Q gi|254781167|r 225 MLTTV 229 (322)
Q Consensus 225 if~~I 229 (322)
.-.-+
T Consensus 220 ~~~~~ 224 (231)
T pfam01884 220 REMAI 224 (231)
T ss_pred HHHHH
T ss_conf 99999
No 282
>PRK07534 methionine synthase I; Validated
Probab=91.80 E-value=1.1 Score=24.73 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-------
Q ss_conf 6998999998875310453777442-56413677666889999855899999999985027906999861134-------
Q gi|254781167|r 56 GADISKLVEAAKIVEDFGYNEINLN-VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV------- 127 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~g~~~idlN-~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~------- 127 (322)
-.+|+...+.-+---+.|.|.|--| +++-..+....+...-.-.=-....++.+..++..+.+|.|===+|-
T Consensus 41 ~~~Pd~V~~iH~dyi~AGAdVI~TNTy~a~~~~L~~~~~e~~~~eln~~Av~lAr~Aa~~~~~~v~VAGSigP~g~~~~p 120 (335)
T PRK07534 41 EDHPDKIRALYQGAVDAGSDIFLTNSFGGTAARLKLHEAQDRVHELNRRAAEIGREVADKAGRKVIVAGSVGPTGEIMEP 120 (335)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 79859999999999996599998077614699997657389999999999999999987329967999436776664577
Q ss_pred ----CCCCCCCCHHHHHHHHCCCCCCHHHH
Q ss_conf ----56653220145543200012201210
Q gi|254781167|r 128 ----DDQIPAVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~g~~~iti 153 (322)
+..+..+.+.+.++.+.++|||.+.+
T Consensus 121 ~~~~~~~e~~~~f~eq~~~L~~~gvDlil~ 150 (335)
T PRK07534 121 MGALTHAEAVEMFHEQAEGLKAGGADVLWV 150 (335)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 789999999999999999987369989955
No 283
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.71 E-value=0.81 Score=25.84 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 9999999998502790699986113456653220145543200012201210--01356640257742122766104678
Q gi|254781167|r 102 DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILKGLSPKDNRKIPNLDYDIV 179 (322)
Q Consensus 102 ~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~g~s~~~~~~~~~~~~~~i 179 (322)
+...+.++..++..++||-+=+ -| .+.+.+.++++.++++|+++|.+ |+=.. ..+.. .........+.+
T Consensus 87 e~~l~~i~~~k~~~~~pvIaSi-~g----~s~ee~~~~a~~~e~~gadaiElNis~~~~-~~~~~---~~~~~~~~~~iv 157 (333)
T PRK07565 87 EEYLELIRRAKEAVDIPVIASL-NG----SSAGGWVDYARQIEEAGADALELNIYYLPT-DPDIS---GAEVEQRYLDIL 157 (333)
T ss_pred HHHHHHHHHHHHCCCCCEEEEC-CC----CCHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCC---CCCHHHHHHHHH
T ss_conf 9999999987750598459874-77----998999999999976499889997667798-86544---465078899999
Q ss_pred HHHHHHCCCCCCCC--CCCCCCHHHHHHHH--HCCCCEEEEC-----------------CCCCHHHHHH----HHHHHHC
Q ss_conf 76667388753025--77778998988874--2035234412-----------------2000124399----9999871
Q gi|254781167|r 180 YEIKKENPDLFIGL--NGGLEDMSQALKIL--PSVDGVMIGR-----------------AAYKNSAMLT----TVDEYFS 234 (322)
Q Consensus 180 ~~l~~~~~~~~i~~--NGdi~~~~~a~~~l--~~~dgvMigR-----------------ga~~~P~if~----~I~~~l~ 234 (322)
..+++.. ++||+. .-++.+..+..+.+ .|+|||-+-- ..++.|++.. .+. .++
T Consensus 158 ~~V~~~~-~~Pv~vKLsPn~tdi~~iA~aa~~~Gadgv~~iNT~~~~~Id~e~~~~~~~~~lSgp~~~~~alr~v~-~v~ 235 (333)
T PRK07565 158 RAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA-ILS 235 (333)
T ss_pred HHHHHHC-CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHH-HHH
T ss_conf 9998646-88568735998210999999999749988998436665633155443736866677431207889999-996
Q ss_pred CCCCCCCCCHH----HHHHHHHHHHHHH--HHHHHHHHHHCCC-CHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99888899988----9999999999999--9999999852287-6799899899987--389998999999986217811
Q gi|254781167|r 235 NPLTGSSPIKT----RVDKDFWRKISAS--MTDYAARHLHSGG-KLQQITRHMIGLF--HGFPNSRRCRHILTVEAGAST 305 (322)
Q Consensus 235 ~~~~~~~p~~~----~~~~~~~~~i~~~--~~~y~~~~~~~~~-~i~~irKhl~~y~--kGlpgak~~R~~Ls~~~~~~~ 305 (322)
... ..|... ...++..+.+... ..+.+..-...+. -+..|.+-|..|. ||+..-.++|-+|+.......
T Consensus 236 ~~~--~ipIiG~GGI~sg~DaiE~ilAGAsaVQv~Ta~~~~G~~v~~~i~~eL~~~m~~~G~~si~e~~G~l~~~~~~~~ 313 (333)
T PRK07565 236 GRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILAGLEDWMERHGYESLSQFRGSMSQKNVPDP 313 (333)
T ss_pred CCC--CCCEEEECCCCCHHHHHHHHHCCCCHHEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCH
T ss_conf 046--989888889598999999998098863362236653727999999999999998399989996172365679983
Q ss_pred HHH
Q ss_conf 069
Q gi|254781167|r 306 ATH 308 (322)
Q Consensus 306 ~~~ 308 (322)
+..
T Consensus 314 ~~~ 316 (333)
T PRK07565 314 AAF 316 (333)
T ss_pred HHH
T ss_conf 888
No 284
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.52 E-value=0.5 Score=27.40 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=84.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE
Q ss_conf 5784699982699899999887531045377744256413677666889999855899999999985027-906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~R 124 (322)
.++|++.=+-+.+++.....++-+.+-|+..|++-+--|.. .+.++.+++.. ++-| =
T Consensus 11 ~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t~~a------------------~~~I~~l~~~~p~~~i----G 68 (210)
T PRK07455 11 QQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP------------------AELISQLREKLPECII----G 68 (210)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCH------------------HHHHHHHHHHCCCCEE----E
T ss_conf 97997999975999999999999998799889996899889------------------9999999987899689----8
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHH-------H--HHH-----------------HHHHHCCCCCCCCCCCCCH---
Q ss_conf 1345665322014554320001220121-------0--013-----------------5664025774212276610---
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIW-------I--HAR-----------------KAILKGLSPKDNRKIPNLD--- 175 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~it-------i--H~R-----------------t~~~~g~s~~~~~~~~~~~--- 175 (322)
.|. ....+-++.+.++|++.+. | .++ ++...|. +--...|++
T Consensus 69 aGT------V~~~e~~~~a~~aGA~FiVSP~~~~~vi~~a~~~~i~~iPGv~TpsEi~~A~~~G~---~~vKlFPA~~~G 139 (210)
T PRK07455 69 TGT------LLTLEDLEEAIAAGAQFCFTPHVDLELIQAAVAADIPIIPGALTPTEIVTAWQAGA---SCVKVFPVQAVG 139 (210)
T ss_pred EEE------CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCC---CEEEECCCHHCC
T ss_conf 881------87899999999869999986888899999999829976588699999999998699---847750513206
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHH
Q ss_conf -467876667388753025777789989888742-03523441220001243
Q gi|254781167|r 176 -YDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 176 -~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~i 225 (322)
-++++.++.-+|+++++..|||+ .+.+.+.+. |+.+|=+|.....+.++
T Consensus 140 G~~ylkal~~p~p~i~~~ptGGV~-~~n~~~yl~ag~~~vg~Gs~l~~~~~i 190 (210)
T PRK07455 140 GADYIKSLQGPLGHIPLIPTGGVT-LENAQAFIQAGAIAVGLSSQLFPKTLL 190 (210)
T ss_pred CHHHHHHHHCCCCCCCEEECCCCC-HHHHHHHHHCCCEEEEECHHHCCHHHH
T ss_conf 799999986548999388789989-888999996899799988461898888
No 285
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.50 E-value=1.1 Score=24.90 Aligned_cols=156 Identities=20% Similarity=0.298 Sum_probs=81.5
Q ss_pred HHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHC
Q ss_conf 88753104537774425641367766688999985589999999998502790699986113456653220145543200
Q gi|254781167|r 65 AAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIK 144 (322)
Q Consensus 65 aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~ 144 (322)
.|+++++.||+.|=+--.. ... ..|.--.=+-..+.+.+.++.+.+++++||+|-+--||.+. .+..+.++.++
T Consensus 21 SAr~~~~~Gf~ai~~ss~~-~a~--s~G~pD~~~~~~~e~~~~~~~I~~a~~lPv~aD~d~GyG~~---~~v~~tv~~~~ 94 (243)
T cd00377 21 SARLAERAGFKAIYTSGAG-VAA--SLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVRELE 94 (243)
T ss_pred HHHHHHHCCCCEEEECHHH-HHH--HCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCH---HHHHHHHHHHH
T ss_conf 9999998599999824899-999--75999878798789999999999616998899876677867---99999999999
Q ss_pred CCCCCHHHHHHHHHH--HHCCCCCCCCCCCCCHHHHHHHHH---H---HCCCCCCCCCCCC-----CCHHHHHHH----H
Q ss_conf 012201210013566--402577421227661046787666---7---3887530257777-----899898887----4
Q gi|254781167|r 145 KSGVNGIWIHARKAI--LKGLSPKDNRKIPNLDYDIVYEIK---K---ENPDLFIGLNGGL-----EDMSQALKI----L 207 (322)
Q Consensus 145 ~~g~~~itiH~Rt~~--~~g~s~~~~~~~~~~~~~~i~~l~---~---~~~~~~i~~NGdi-----~~~~~a~~~----l 207 (322)
++|+..+.|-=.+.- ..+.+++. -++.- +.+.+++ + ..+++.|++=-|. ...+++++. .
T Consensus 95 ~aG~agi~IED~~~~k~~~~~~~~~--l~~~~--e~~~ki~aa~~a~~~~~d~~I~ARTDa~~~~~~~~~eai~R~~aY~ 170 (243)
T cd00377 95 EAGAAGIHIEDQVGPKKCGHHGGKV--LVPIE--EFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCC--CCCHH--HHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 7499679865878876566657632--30699--9999999999988636881687542345405788999999999999
Q ss_pred H-CCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 2-035234412200012439999998
Q gi|254781167|r 208 P-SVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 208 ~-~~dgvMigRga~~~P~if~~I~~~ 232 (322)
+ |+|+|++=-. .+|--..++.+.
T Consensus 171 ~AGAD~ifi~~~--~~~~ei~~~~~~ 194 (243)
T cd00377 171 EAGADGIFVEGL--KDPEEIRAFAEA 194 (243)
T ss_pred HCCCCEEEECCC--CCHHHHHHHHHH
T ss_conf 829989994589--999999999973
No 286
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.32 E-value=0.48 Score=27.52 Aligned_cols=162 Identities=22% Similarity=0.260 Sum_probs=88.3
Q ss_pred HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEE-------EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 027457846999826998999998875310453777-------4425641367766688999985589999999998502
Q gi|254781167|r 42 GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEI-------NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA 114 (322)
Q Consensus 42 ~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~i-------dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~ 114 (322)
.+.|.-+|...|=.|-+--.....| ..++|--.+ |+..-+-.--| =--||..|+|.+++. ++-+
T Consensus 80 afKPRTSPYsFQGlge~gL~~l~~a--~~~~Gl~vvtEvm~~~~~e~~~~y~Di--lqvGARNMQNF~LLk----e~G~- 150 (286)
T COG2876 80 AFKPRTSPYSFQGLGEEGLKLLKRA--ADETGLPVVTEVMDVRDVEAAAEYADI--LQVGARNMQNFALLK----EVGR- 150 (286)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH--HHHCCCEEEEEECCHHHHHHHHHHHHH--HHHCCCCHHHHHHHH----HHCC-
T ss_conf 6788899533366577889999998--887299058895489899999866169--886332005169999----8235-
Q ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 79069998611345665322014554320001220121001356640257742122766104678766673887530257
Q gi|254781167|r 115 LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 115 ~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
.++||-.|=-++ .+.++|+.-++-+...|...+.+--| .+..+. +.-|| .+|...|..+|+. +++||+.+
T Consensus 151 ~~kPvLLKRg~~----aTieEwL~AAEYI~s~GN~~vILCER-GIRtfe--~~TRn--tLDi~aV~~~kq~-THLPVivD 220 (286)
T COG2876 151 QNKPVLLKRGLS----ATIEEWLNAAEYILSHGNGNVILCER-GIRTFE--KATRN--TLDISAVPILKQE-THLPVIVD 220 (286)
T ss_pred CCCCEEEECCCC----CCHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCC--CCCCC--EECHHHHHHHHHH-CCCCEEEC
T ss_conf 599769724741----24999999999999679995799714-433455--56664--2236888888761-57877987
Q ss_pred CCC----CCHHH--HHHH-HHCCCCEEEECCCCCHHH
Q ss_conf 777----89989--8887-420352344122000124
Q gi|254781167|r 195 GGL----EDMSQ--ALKI-LPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 195 Gdi----~~~~~--a~~~-l~~~dgvMigRga~~~P~ 224 (322)
=.= ++.-. |... .-|+||+||- ..-||-
T Consensus 221 pSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~ 255 (286)
T COG2876 221 PSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPE 255 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEE--ECCCCC
T ss_conf 87765531357888999986167736999--647954
No 287
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.15 E-value=0.84 Score=25.70 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 58999999999850279069998611345665322014554320001220121001356640257742122766104678
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIV 179 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i 179 (322)
+|+.+.+.++.+++.++.|+-|-+=+ +. +...+.+.++.+.+.+++.++.|+-. | .+++
T Consensus 37 ~~~~l~~~i~~~~~~~~~pfgvnl~~-~~---~~~~~~~~~~~~~~~~v~~v~~~~g~---------------p--~~~v 95 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLV-PS---SNPDFEALLEVALEEGVPVVSFSFGP---------------P--AEVV 95 (236)
T ss_pred CHHHHHHHHHHHHHHCCCCEEECCCC-CC---CCCCHHHHHHHHHHCCCCEEEECCCC---------------C--HHHH
T ss_conf 99999999999997469972443324-67---76368999999997699999987989---------------7--8999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 76667388753025777789989888742-0352344
Q gi|254781167|r 180 YEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 180 ~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
..+++.. +.++ ..+.|.++|.+..+ |+|++.+
T Consensus 96 ~~l~~~g--~~v~--~~v~s~~~A~~a~~~GaD~iv~ 128 (236)
T cd04730 96 ERLKAAG--IKVI--PTVTSVEEARKAEAAGADALVA 128 (236)
T ss_pred HHHHHCC--CEEE--EECCCHHHHHHHHHCCCCEEEE
T ss_conf 9999829--9899--9589899999999818998999
No 288
>pfam01680 SOR_SNZ SOR/SNZ family. Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019.
Probab=91.02 E-value=0.081 Score=33.20 Aligned_cols=112 Identities=25% Similarity=0.298 Sum_probs=66.0
Q ss_pred HHHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 8875310453777-442564136776668899998558999999999850279069998611345665322014554320
Q gi|254781167|r 65 AAKIVEDFGYNEI-NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSI 143 (322)
Q Consensus 65 aa~~~~~~g~~~i-dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~ 143 (322)
-|++.++.|.-.+ -|- - +|-=.++.+|-+=|.||..+.+|.. ++++||..|+|+|- + -=++.+
T Consensus 27 QA~IAE~AGA~aVMaLE-r--vPadIR~~GGVaRMsdp~~I~eI~~----aVsIPVMAK~RIGH--------f-vEAqiL 90 (209)
T pfam01680 27 QARIAEEAGAVAVMALE-R--VPADIRAAGGVARMSDPKMIKEIMN----AVSIPVMAKVRIGH--------F-VEAQIL 90 (209)
T ss_pred HHHHHHHCCCEEEEEEC-C--CCHHHHHCCCEEECCCHHHHHHHHH----HEECHHEEECCCCH--------H-HHHHHH
T ss_conf 99999973773787542-4--7976862589233489899999998----60101112013431--------8-999999
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCC
Q ss_conf 0012201210013566402577421227661046787666738875302577778998988874-203
Q gi|254781167|r 144 KKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSV 210 (322)
Q Consensus 144 ~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~ 210 (322)
+.-|+|.|-=- - -++| +|..+-- -|..| .+||+ + |.++.-+|++.. +|+
T Consensus 91 EalgVD~IDES---E---VLTp--------AD~~~HI-~K~~F-~vPFV-C-GarnLGEAlRRI~EGA 140 (209)
T pfam01680 91 EAIGVDYIDES---E---VLTP--------ADEFFHI-DKKKF-TVPFV-C-GARNLGEALRRIWEGA 140 (209)
T ss_pred HHHCCCCCCCC---C---CCCC--------CCHHCCC-CCCCC-CCCEE-E-CCCCHHHHHHHHHCCH
T ss_conf 99588822522---2---5777--------7542055-41016-77643-0-6887389999887014
No 289
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=90.97 E-value=0.61 Score=26.76 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 76610467876667388753025777789989888742-0352344122000124399999987
Q gi|254781167|r 171 IPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 171 ~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~if~~I~~~l 233 (322)
-.|..-+.|+++++. .+++.-|||+|.|.|.++.. ++|-+-.|--+..+|--+.++-..+
T Consensus 177 ~~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~~~ 237 (240)
T COG1646 177 GDPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAI 237 (240)
T ss_pred CCCCCHHHHHHHHCC---CEEEECCCCCCHHHHHHHHHCCCCEEEECCEEECCHHHHHHHHHHH
T ss_conf 998688999986145---5089858849899999999717998997700200878899999986
No 290
>PRK02227 hypothetical protein; Provisional
Probab=90.90 E-value=0.69 Score=26.34 Aligned_cols=73 Identities=23% Similarity=0.275 Sum_probs=42.1
Q ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 75310453777442564136776668899998558999999999850279069998611345665322014554320001
Q gi|254781167|r 67 KIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKS 146 (322)
Q Consensus 67 ~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~ 146 (322)
+.+.+.|+|+||+- =| ..+--| ...|..+.+|+..+.. ..|||+. +| |-..+......-+..+..+
T Consensus 14 ~~a~~~gaDIIDvK--nP----~~GaLG---a~~p~~I~~I~~~v~~--~~~vSat--iG-D~p~~~~~i~~a~~~~a~~ 79 (239)
T PRK02227 14 LEALEGGADIIDVK--NP----KEGSLG---ANFPWVIREIVAAVPG--RKPVSAT--IG-DVPYKPGTAALAALGAAAT 79 (239)
T ss_pred HHHHHCCCCEEEEC--CC----CCCCCC---CCCHHHHHHHHHHHCC--CCCEEEE--EC-CCCCCCHHHHHHHHHHHHC
T ss_conf 99985799989827--98----888788---9999999999998579--9717988--36-9789937999999876613
Q ss_pred CCCHHHH
Q ss_conf 2201210
Q gi|254781167|r 147 GVNGIWI 153 (322)
Q Consensus 147 g~~~iti 153 (322)
|++.|-|
T Consensus 80 GvdyVKv 86 (239)
T PRK02227 80 GVDYVKV 86 (239)
T ss_pred CCCEEEE
T ss_conf 9998999
No 291
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.87 E-value=0.57 Score=26.93 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=83.1
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH----HHHHH------HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5784699982699899999887531045377744256413677----66688------9999855899999999985027
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARV----HEGSF------GACLMLNPDIVGDCIAAMCKAL 115 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v----~~~g~------GaaLl~~p~~~~~iv~~~~~~~ 115 (322)
...|++.=|=+.+++...+.++.+.+.|+..|++-+--|...- .++.+ |++=..+++.+.+.+.+=.+
T Consensus 8 ~~~plvaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl~tp~a~~~I~~l~~~~~~~~~iGAGTVlt~e~~~~ai~aGA~-- 85 (206)
T PRK09140 8 TKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDDALIGAGTVLSPEQVDRLADAGGR-- 85 (206)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCC--
T ss_conf 859979999589999999999999986998899917997699999999996798659986204679999999985999--
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH--HHH---HHHHHHCCCCCCCCCCCCCH---HHHHHHHHHHCC
Q ss_conf 9069998611345665322014554320001220121--001---35664025774212276610---467876667388
Q gi|254781167|r 116 SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW--IHA---RKAILKGLSPKDNRKIPNLD---YDIVYEIKKENP 187 (322)
Q Consensus 116 ~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it--iH~---Rt~~~~g~s~~~~~~~~~~~---~~~i~~l~~~~~ 187 (322)
.=||- ....++++.+.+.|+-.+- .-+ -++...|.+ -....|++ -.+++.++.-+|
T Consensus 86 -FiVSP------------~~~~~vi~~a~~~~i~~iPG~~TPsEi~~A~~~Ga~---~vKlFPA~~~Gp~~ikal~~p~P 149 (206)
T PRK09140 86 -LIVTP------------NIDPEVIRRAVAYGMTVMPGVATPTEAFAALRAGAD---ALKLFPASQLGPAGIKALRAVLP 149 (206)
T ss_pred -EEECC------------CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC---EEEECCHHCCCHHHHHHHHCCCC
T ss_conf -99999------------998999999998299652785999999999985987---15657511059999999864389
Q ss_pred -CCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCC
Q ss_conf -753025777789989888742-0352344122000
Q gi|254781167|r 188 -DLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYK 221 (322)
Q Consensus 188 -~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~ 221 (322)
++++...|||. .+++.+.+. |+.+|=+|...+.
T Consensus 150 ~~~~~~ptGGV~-~~N~~~~l~aGa~avG~Gs~L~~ 184 (206)
T PRK09140 150 PDVPVFAVGGVT-PENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CCCEEEECCCCC-HHHHHHHHHCCCCEEEECHHCCC
T ss_conf 999899537988-88899999869919996065159
No 292
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=90.79 E-value=0.83 Score=25.75 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=55.8
Q ss_pred HHHHHHCCCCEEE--EEEEECCCCCCCCC-CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999850279069--99861134566532-20145543200012201210013566402577421227661046787666
Q gi|254781167|r 107 CIAAMCKALSIPV--TVKCRIGVDDQIPA-VALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIK 183 (322)
Q Consensus 107 iv~~~~~~~~~pv--svK~RlG~~~~~~~-~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~ 183 (322)
=++++++.+++|| -+| -++++.+-+ --+.+=++.+.++|++.|.+.+-.+ .|. ..--+++.+++
T Consensus 23 dI~aik~~v~vPIIGi~K--~~~~~~~VyITPt~~ev~~l~~aGadiIA~DaT~R---------~RP--~~~~~lv~~i~ 89 (192)
T pfam04131 23 NIKAIRAIVDLPIIGIVK--RDLPDSPVRITPTMKDIDELANAGADIIALDGTDR---------PRP--VDIESFIKRIK 89 (192)
T ss_pred HHHHHHHHCCCCEEEEEE--CCCCCCCCEECCCHHHHHHHHHCCCCEEEEECCCC---------CCC--CCHHHHHHHHH
T ss_conf 999999858998799985--67899981655889999999985999999846789---------897--58999999999
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 7388753025777789989888742-035
Q gi|254781167|r 184 KENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 184 ~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
+.. . ..--||.|.+++....+ |+|
T Consensus 90 ~~~--~--l~MAD~st~eea~~A~~~G~D 114 (192)
T pfam04131 90 EKG--Q--LAMADCSTFEEGLNAHKLGVD 114 (192)
T ss_pred HHC--C--EEEEECCCHHHHHHHHHCCCC
T ss_conf 819--9--889974999999999985999
No 293
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=90.76 E-value=0.54 Score=27.16 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=63.3
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 86113456653220145543200012201210013566402577421227661046787666738875302577778998
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS 201 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~ 201 (322)
+.++|+.-+ + .+-+..+++.|+|.|.+=+= +.- +.|++. ++.-|+.+..+.+.. .+|+++-|||+ .+
T Consensus 104 ~~iIG~S~h-~----~eea~~A~~~g~DYv~~Gpi---fpT-~tK~~~--~~~G~~~l~~~~~~~-~iP~vAIGGi~-~~ 170 (211)
T COG0352 104 GLIIGLSTH-D----LEEALEAEELGADYVGLGPI---FPT-STKPDA--PPLGLEGLREIRELV-NIPVVAIGGIN-LE 170 (211)
T ss_pred CCEEEEECC-C----HHHHHHHHHCCCCEEEECCC---CCC-CCCCCC--CCCCHHHHHHHHHHC-CCCEEEECCCC-HH
T ss_conf 978983049-9----99999987639999998886---788-999887--746789999999827-99989984889-99
Q ss_pred HHHHHH-HCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 988874-203523441220001243999999
Q gi|254781167|r 202 QALKIL-PSVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 202 ~a~~~l-~~~dgvMigRga~~~P~if~~I~~ 231 (322)
.+...+ +|+|||-+-|+++.++-.-..+++
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~ 201 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITSAADPAAAAKA 201 (211)
T ss_pred HHHHHHHHCCCEEEEHHHHHCCCCHHHHHHH
T ss_conf 9999998298769726686607988999999
No 294
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=90.65 E-value=1.5 Score=23.95 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=101.8
Q ss_pred HHHHHHHHH---HCCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 789999998---289829981----70332477608978983----0274578469998269989999988753104537
Q gi|254781167|r 7 RHYRFFARL---LTNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYN 75 (322)
Q Consensus 7 ~~fR~l~r~---~~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~ 75 (322)
-.+|.+++. .|.++++.. |+.+ |....+++++ +.....-|+++.. |++..+..+-++..++.|+|
T Consensus 22 ~~l~~~v~~li~~Gv~gi~v~GstGE~~~---Ls~eEr~~v~~~~v~~~~grvpvi~gv-g~~t~~ai~la~~A~~~Gad 97 (296)
T PRK03620 22 AAYREHLEWLAPYGAAALFAAGGTGEFFS---LTPDEYSQVVRAAVEACAGRVPVIAGA-GGGTAQAIEYAQAAERAGAD 97 (296)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHH---CCHHHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999779998996842313434---899999999999999838973598257-75379999999999982999
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 77442564136776668899998558999999999850279069998611345665322014554320001220121001
Q gi|254781167|r 76 EINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA 155 (322)
Q Consensus 76 ~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~ 155 (322)
.|-+ -.|- ..+ .+.+-+.+-.+++.+++++||-+==|-|.. ...+++..+.+. |+
T Consensus 98 ai~v--~pPy--y~~--------~~~~~l~~~~~~ia~a~~lPi~lYn~~~~~------~~~~~l~~L~~~-------~p 152 (296)
T PRK03620 98 GILL--LPPY--LTE--------APQEGLAAHVEAVCKSTDLGVIVYNRDNAV------LTADTLARLAER-------CP 152 (296)
T ss_pred EEEE--CCCC--CCC--------CCHHHHHHHHHHHHHHCCCCEEEECCCCCC------CCHHHHHHHHHH-------CC
T ss_conf 8996--6986--789--------999999999999998318997751788877------699999999972-------89
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3566402577421227661046787666738875302577778998-988874-20352344122000124399999987
Q gi|254781167|r 156 RKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS-QALKIL-PSVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 156 Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~-~a~~~l-~~~dgvMigRga~~~P~if~~I~~~l 233 (322)
.- .|. |+ .. -|.+.+.++.+..++-..+.+| ..+.+ .+..++ -|++|.+.|-+.+ -|-++.++-+.+
T Consensus 153 ni---vgi--Kd--ss--~d~~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~~~~G~~g~~s~~~n~-~P~~~~~l~~a~ 221 (296)
T PRK03620 153 NL---IGF--KD--GV--GDIELMVRITRALGDRLLYLGG-LPTAEVFAAAYLALGVPTYSSAVFNF-IPEIALAFYAAL 221 (296)
T ss_pred CE---EEE--EE--CC--CCHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHHHHH
T ss_conf 88---999--95--86--8899999999976997599828-96447888899628885784030212-689999999999
Q ss_pred CCCC
Q ss_conf 1998
Q gi|254781167|r 234 SNPL 237 (322)
Q Consensus 234 ~~~~ 237 (322)
..+.
T Consensus 222 ~~gd 225 (296)
T PRK03620 222 RAGD 225 (296)
T ss_pred HCCC
T ss_conf 8787
No 295
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.63 E-value=0.73 Score=26.15 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999855899999999985027906999861134566532201455432000122012100135664025774212276
Q gi|254781167|r 93 FGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIP 172 (322)
Q Consensus 93 ~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~ 172 (322)
-||.++++.+++.++ .+ ++.||-+|= |. .-+.+.++..++.+.+.|...|.+--|=.... .+. -
T Consensus 112 IpAr~~rqtdLL~a~----~~-t~kpV~lKk--Gq--~~s~~e~~~aaeki~s~Gn~~vilcERGt~fg-----y~~--l 175 (281)
T PRK12457 112 VPAFLARQTDLVVAI----AK-TGKPVNIKK--PQ--FMSPTQMKHVVSKCREAGNDRVILCERGSSFG-----YDN--L 175 (281)
T ss_pred ECHHHCCCCHHHHHH----HH-CCCEEEECC--CC--CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-----CCC--C
T ss_conf 443750281899999----97-399279558--77--69999999999999975998499983889878-----888--7
Q ss_pred CCHHHHHHHHHHHCCCCCCC-----------CCCCC----CCHHHHH--H-HHHCCCCEEEECCCCCHH
Q ss_conf 61046787666738875302-----------57777----8998988--8-742035234412200012
Q gi|254781167|r 173 NLDYDIVYEIKKENPDLFIG-----------LNGGL----EDMSQAL--K-ILPSVDGVMIGRAAYKNS 223 (322)
Q Consensus 173 ~~~~~~i~~l~~~~~~~~i~-----------~NGdi----~~~~~a~--~-~l~~~dgvMigRga~~~P 223 (322)
..|...+..+++...++||+ ++|+. ++.-..+ . +..|+||+||=- .-||
T Consensus 176 vvD~~~i~~mk~~~~~~PVi~D~THs~q~~~~~g~~sgG~r~~v~~la~Aava~GadGlfiEv--Hp~P 242 (281)
T PRK12457 176 VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVVDLARAGMAVGLAGLFLEA--HPDP 242 (281)
T ss_pred CCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE--CCCC
T ss_conf 655000999998656998687567675134888788888289999999999980888899983--7982
No 296
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=90.54 E-value=0.42 Score=27.95 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-----
Q ss_conf 22014554320001220121001356640257742---1227661046787666738875302577778998988-----
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKD---NRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQAL----- 204 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~---~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~----- 204 (322)
.=.-.++|+...+.|+|.|+=-==|+. ++ +|. ...++|.++.+.+ .+|+..=|||++.+|+.
T Consensus 41 aGDPVeLA~~Y~~eGADELVFLDITAS------~ecPl~R~---~m~~Vv~r~Ae~V-fiPlTVGGGI~~~eD~~GtkiP 110 (312)
T TIGR00735 41 AGDPVELAQRYDEEGADELVFLDITAS------SECPLGRE---TMIDVVERTAEKV-FIPLTVGGGIKSIEDVKGTKIP 110 (312)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCC------CCCCCCCC---CHHHHHHHHHHHC-CCCEEECCCCCCHHHCCCCCCC
T ss_conf 178237899987628958985141136------66788880---1167888875214-5222216888843204564442
Q ss_pred ------HHHH-CCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf ------8742-035234412200012439999998
Q gi|254781167|r 205 ------KILP-SVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 205 ------~~l~-~~dgvMigRga~~~P~if~~I~~~ 232 (322)
.+|. |+|=|-|...|+.||-+..+....
T Consensus 111 alevas~~L~aGADKvSiNTaAv~~P~li~e~a~~ 145 (312)
T TIGR00735 111 ALEVASKLLRAGADKVSINTAAVKNPELISEAADR 145 (312)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHC
T ss_conf 78999999854898463284675084478998732
No 297
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=90.43 E-value=1.5 Score=23.82 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 5589999999998502790699986
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
-+|..++++|+++++.+++||.+-+
T Consensus 182 ltP~~ayelVk~iK~~~~~pv~lHt 206 (472)
T COG5016 182 LTPYEAYELVKAIKKELPVPVELHT 206 (472)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9868899999999974597069850
No 298
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=90.42 E-value=0.47 Score=27.57 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=87.6
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCEE--
Q ss_conf 457846999826998999998875310453777442564136776668----89999855899999999985027906--
Q gi|254781167|r 45 TQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGS----FGACLMLNPDIVGDCIAAMCKALSIP-- 118 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g----~GaaLl~~p~~~~~iv~~~~~~~~~p-- 118 (322)
.-.-|+++-+.-||+.... .++..-|.+.|-.|.=|-+ .++..| .-+-+++...++. ..+.
T Consensus 83 ~v~iPvGvNVLrNd~vaA~---~IA~a~gA~FIRVN~~tg~-~~tdqGiieg~A~e~~r~r~~L~---------~~v~vl 149 (263)
T COG0434 83 EVSIPVGVNVLRNDAVAAL---AIAYAVGADFIRVNVLTGA-YATDQGIIEGNAAELARYRARLG---------SRVKVL 149 (263)
T ss_pred HCCCCCEEEEECCCCHHHH---HHHHHCCCCEEEEEEEECE-EECCCCCCCCHHHHHHHHHHHCC---------CCCEEE
T ss_conf 5076610321026628889---9998607977998734342-76356501444889999898616---------773797
Q ss_pred --EEEEEECCCCCCCCCCCHHHHHH-HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf --99986113456653220145543-200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 119 --VTVKCRIGVDDQIPAVALRNLVK-SIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 119 --vsvK~RlG~~~~~~~~~~~~~~~-~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
|-||--.-+.+ ..+.+.++ .++..++|++.+-|.+. -.+.|.+.+...++..+-++++++|
T Consensus 150 ADv~VKHa~~l~~----~~~~~~v~dtver~~aDaVI~tG~~T------------G~~~d~~el~~a~~~~~~pvlvGSG 213 (263)
T COG0434 150 ADVHVKHAVHLGN----RSLEEAVKDTVERGLADAVIVTGSRT------------GSPPDLEELKLAKEAVDTPVLVGSG 213 (263)
T ss_pred EECHHHCCCCCCC----CCHHHHHHHHHHCCCCCEEEEECCCC------------CCCCCHHHHHHHHHCCCCCEEEECC
T ss_conf 6111321532378----68899999999704887799956667------------8999989999998626987897368
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7789989888742035234412200
Q gi|254781167|r 196 GLEDMSQALKILPSVDGVMIGRAAY 220 (322)
Q Consensus 196 di~~~~~a~~~l~~~dgvMigRga~ 220 (322)
.+.+.+...+.-+||+.+|...-
T Consensus 214 --v~~eN~~~~l~~adG~IvgT~lK 236 (263)
T COG0434 214 --VNPENIEELLKIADGVIVGTSLK 236 (263)
T ss_pred --CCHHHHHHHHHHCCCEEEEEEEC
T ss_conf --88889999998728669978660
No 299
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=90.24 E-value=1.5 Score=23.76 Aligned_cols=135 Identities=24% Similarity=0.382 Sum_probs=86.4
Q ss_pred CCCCEEEEEEC-----CCHHHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 57846999826-----99899999887531045377744--2564136776668899998558999999999850279--
Q gi|254781167|r 46 QEKPLALQIGG-----ADISKLVEAAKIVEDFGYNEINL--NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-- 116 (322)
Q Consensus 46 ~e~p~~~Ql~g-----~~p~~~~~aa~~~~~~g~~~idl--N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-- 116 (322)
.|+-+.+-... +|-+.+-++-+..++.|+|.|++ -.|| -.|..+.++++.+++.++
T Consensus 124 KEHGLiVEfSAEDATRtd~dfLIk~~k~A~eAGADRi~~~DTVGV---------------~~P~km~~l~k~~k~~~kKd 188 (371)
T TIGR02090 124 KEHGLIVEFSAEDATRTDIDFLIKVFKKAEEAGADRINVADTVGV---------------LTPQKMEELIKKIKENVKKD 188 (371)
T ss_pred HHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC---------------CCHHHHHHHHHHHHHHHCCC
T ss_conf 525735531778876586789999987133216777550785563---------------68267999999999863588
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-H-------------
Q ss_conf 0699986113456653220145543200--01220121001356640257742122766104678-7-------------
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIK--KSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIV-Y------------- 180 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~--~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i-~------------- 180 (322)
.||||=|- +++=+..+..+. .+||..+ |+ | -+|++-| .|.|..|-| -
T Consensus 189 ~~~sVHCH--------NDFGlAtANsi~gv~aGA~~v--H~-T--vNGiGER----AGNAaLEEVV~AL~~LYG~~~~IK 251 (371)
T TIGR02090 189 LPVSVHCH--------NDFGLATANSIAGVLAGAEQV--HV-T--VNGIGER----AGNAALEEVVMALKVLYGVDTKIK 251 (371)
T ss_pred CCEEEEEE--------CCCCHHHHHHHHHHHCCCEEE--EE-E--ECCCCCC----HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 70588620--------860188999999972283577--35-5--5576101----345889999999898714102445
Q ss_pred --------HHHHHCCCCCCCCCCCCCCHHHHHHHHHC--CCCE
Q ss_conf --------66673887530257777899898887420--3523
Q gi|254781167|r 181 --------EIKKENPDLFIGLNGGLEDMSQALKILPS--VDGV 213 (322)
Q Consensus 181 --------~l~~~~~~~~i~~NGdi~~~~~a~~~l~~--~dgv 213 (322)
++.+.++.+++..|==|.- |.|-.|.+| +|||
T Consensus 252 ~ekLYE~SrlVs~l~~~~VPpNKaIVG-eNAFaHEsGIHv~gv 293 (371)
T TIGR02090 252 TEKLYETSRLVSKLSGVKVPPNKAIVG-ENAFAHESGIHVDGV 293 (371)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCHHHHHHH
T ss_conf 300201777899871788889677325-650001103558887
No 300
>KOG4175 consensus
Probab=90.15 E-value=1.6 Score=23.66 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=64.2
Q ss_pred HHHHHCCCCCC-CEEEEEECCCHHH--HHHHHHHHHCCCCCEEEECCCCCH-----HHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 89830274578-4699982699899--999887531045377744256413-----67766688999985--58999999
Q gi|254781167|r 38 KNILGFSTQEK-PLALQIGGADISK--LVEAAKIVEDFGYNEINLNVGCPS-----ARVHEGSFGACLML--NPDIVGDC 107 (322)
Q Consensus 38 ~~~~~~~~~e~-p~~~Ql~g~~p~~--~~~aa~~~~~~g~~~idlN~GCP~-----~~v~~~g~GaaLl~--~p~~~~~i 107 (322)
+++.+...+.+ .++.-+-.++|+. -+.+-+.+++.|.|+|+|-+--.. |.++ .+.--+|++ +.+.+.++
T Consensus 7 ~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq-~~n~~aL~ng~tl~~i~em 85 (268)
T KOG4175 7 ETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQ-AANRRALLNGTTLNSIIEM 85 (268)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHH-HHHHHHHHCCCCHHHHHHH
T ss_conf 999987752870589987248996788999998875279674886685676456773455-6678998728968999999
Q ss_pred HHHHHCC-CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH
Q ss_conf 9998502-790699986113456653220145543200012201210
Q gi|254781167|r 108 IAAMCKA-LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 108 v~~~~~~-~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti 153 (322)
++..+.. +.+|+-. .|+-+..-..-...++..+.++|+..+.|
T Consensus 86 vk~ar~~gvt~PIiL---mgYYNPIl~yG~e~~iq~ak~aGanGfii 129 (268)
T KOG4175 86 VKEARPQGVTCPIIL---MGYYNPILRYGVENYIQVAKNAGANGFII 129 (268)
T ss_pred HHHHCCCCCCCCEEE---EECCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 998504686302662---20144887640789999999658774585
No 301
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=89.86 E-value=1.1 Score=24.98 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99899999887531045377744256413677666889-99985589999999998502790699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFG-ACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G-aaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
.+++...+-++.+.+.|+|.||+-. +. ++.|+- -.--...+++..+++++++..+++|||-+|-
T Consensus 21 ~~~~~a~~~a~~~i~~GAdiIDIGa-eS----TrPg~~~is~~eE~~Rl~pvi~~l~~~~~~~iSIDT~~---------- 85 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGG-ES----TRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFR---------- 85 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-CC----CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC----------
T ss_conf 8999999999999987998999798-75----89999869988889889999999986079828997997----------
Q ss_pred HHHHHHHHCCCCCCHHH
Q ss_conf 14554320001220121
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIW 152 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~it 152 (322)
.+.++.+.++|++.|-
T Consensus 86 -~~Va~~al~~Ga~iIN 101 (257)
T cd00739 86 -AEVARAALEAGADIIN 101 (257)
T ss_pred -HHHHHHHHHCCCCEEE
T ss_conf -5999999984998997
No 302
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.85 E-value=1.6 Score=23.60 Aligned_cols=54 Identities=31% Similarity=0.595 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9989999988753104537774425641367766688999985589999999998502790699986
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.+|+.+.+.++.+.+.|++.|.|-= ++ | .-.|..+.++++.+++.+++|+++-+
T Consensus 142 ~~~~~l~~~~~~a~~~Gad~I~l~D-----T~-----G---~~~P~~v~~~v~~l~~~~~~~i~~H~ 195 (378)
T PRK11858 142 TDLDFLIEAAKAAEEAGADRVRFCD-----TV-----G---ILDPFTMYELVKELVEAVDIPIEVHC 195 (378)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-----CC-----C---CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999999999999974998999636-----55-----6---66999999999999972698559997
No 303
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=89.79 E-value=0.35 Score=28.49 Aligned_cols=107 Identities=18% Similarity=0.311 Sum_probs=72.2
Q ss_pred HHHHHHHH--H---HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99985589--9---999999985027906999861134566532201455432000122012100135664025774212
Q gi|254781167|r 95 ACLMLNPD--I---VGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR 169 (322)
Q Consensus 95 aaLl~~p~--~---~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~ 169 (322)
+.|+||=. . +.+-|+++|+ .+|++.||=. -.+++.|. ..+.++|+|.|-+ +|+
T Consensus 158 avmiKDNHi~~~Gs~~~Av~~aR~--~~~~~~kiEV------EVenlE~a-~eA~~AGADiImL-------------DNm 215 (276)
T TIGR00078 158 AVMIKDNHIAAAGSIEKAVKRARA--ALPFAKKIEV------EVENLEEA-EEAAEAGADIIML-------------DNM 215 (276)
T ss_pred EEEEEECEEECCCCHHHHHHHHHH--HCCCCCEEEE------EECCHHHH-HHHHHCCCCEEEC-------------CCC
T ss_conf 389750206606898999999998--4899807998------62898999-9999709959980-------------698
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH
Q ss_conf 27661046787666738875302577778998988874-203523441220001243
Q gi|254781167|r 170 KIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 170 ~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~i 225 (322)
..... -+.|..++...|...+=++|+|+ .++...+. +|+|=+-+|.=...-||+
T Consensus 216 ~p~~~-~~av~~~~~~~p~~~~EaSGGit-l~n~~~ya~~gVD~IS~G~lThs~~~L 270 (276)
T TIGR00078 216 KPEEI-KEAVELLKGRNPNVLVEASGGIT-LDNIEEYAETGVDVISSGALTHSVPAL 270 (276)
T ss_pred CHHHH-HHHHHHHHHCCCEEEEEEECCCC-HHHHHHHHHCCCCEEECCCHHHEEEEE
T ss_conf 94799-99999997029908999836998-789999840897588327411200678
No 304
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=89.46 E-value=0.92 Score=25.42 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCHHH
Q ss_conf 999998875310453777442564136776668899998558999999999850279-0699986113456653220145
Q gi|254781167|r 60 SKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVALRN 138 (322)
Q Consensus 60 ~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~~~~ 138 (322)
+.+.+-|+.+.+.|+|- -..|--+| |-.|..++++|+++++.++ +||-+-+-. .+--.-..
T Consensus 150 ~~yl~la~~L~~~G~DS----------I~IKDMaG---lLTP~~AYELV~alK~~~~n~pvhLH~H~-----TtGmA~~A 211 (616)
T TIGR01108 150 EKYLELAKELLEMGVDS----------ICIKDMAG---LLTPKVAYELVSALKKEFGNLPVHLHSHA-----TTGMAEMA 211 (616)
T ss_pred HHHHHHHHHHHHHCCCE----------EEEECCCC---CCCHHHHHHHHHHHHHHCCCEEEEEECCC-----CHHHHHHH
T ss_conf 88999999999818860----------55202004---64415899999999742397468863247-----23379999
Q ss_pred HHHHHCCCCCCHH
Q ss_conf 5432000122012
Q gi|254781167|r 139 LVKSIKKSGVNGI 151 (322)
Q Consensus 139 ~~~~~~~~g~~~i 151 (322)
+ -...+|||+.|
T Consensus 212 l-lkA~EAG~d~i 223 (616)
T TIGR01108 212 L-LKAIEAGADMI 223 (616)
T ss_pred H-HHHHHCCCCCC
T ss_conf 9-98887078800
No 305
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.42 E-value=1.3 Score=24.29 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=119.0
Q ss_pred HHHHHHHHHH---CCCEEEECCCCCC-HHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7899999982---8982998170332-477608978983----0274578469998269989999988753104537774
Q gi|254781167|r 7 RHYRFFARLL---TNNALLYTEMIVA-DAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 7 ~~fR~l~r~~---~~~~~~~TEmi~a-~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
..+|++++.+ |.++++..-...- ..|....+++++ +.....-|+++++.+.+.++..+-|+.+++.|+|.|=
T Consensus 21 ~~l~~~v~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~t~~~i~~a~~A~~~Gadai~ 100 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAAL 100 (284)
T ss_pred HHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999769998996843512424899999999999999718975077507877899999999999983999899
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 42564136776668899998558999999999850279069998---611345665322014554320001220121001
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVK---CRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA 155 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK---~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~ 155 (322)
+- -|. -.+ .+.+-+.+-.+++.+++++||.+= -+.|.+ -+ .+.+..+.+ |+
T Consensus 101 v~--pP~--y~~--------~s~~~l~~~~~~ia~a~~lPi~lYn~P~~tg~~--l~----~~~l~~L~~--------~p 154 (284)
T cd00950 101 VV--TPY--YNK--------PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVN--IE----PETVLRLAE--------HP 154 (284)
T ss_pred EC--CCC--CCC--------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CC----HHHHHHHHC--------CC
T ss_conf 62--665--789--------799999999999975559977987376411678--88----899999847--------99
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35664025774212276610467876667388-75302577778998988874-20352344122000124399999987
Q gi|254781167|r 156 RKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 156 Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~I~~~l 233 (322)
+-. |. |+ .. .|+..+.++.+..+ ++.+ .+|. -+-....+ -|++|.+.|-+.+ -|..+.++-+.+
T Consensus 155 nv~---gi--K~--ss--~d~~~~~~~~~~~~~~~~v-~~G~---d~~~~~~l~~Ga~G~i~~~~n~-~P~~~~~l~~a~ 220 (284)
T cd00950 155 NIV---GI--KE--AT--GDLDRVSELIALCPDDFAV-LSGD---DALTLPFLALGGVGVISVAANV-APKLMAEMVRAA 220 (284)
T ss_pred CEE---EE--EC--CC--CCHHHHHHHHHHCCCCCEE-ECCC---HHHHHHHHHHCCCEEEEEEHHC-CHHHHHHHHHHH
T ss_conf 989---99--85--88--9899999999866987546-4486---8999999995499699853102-789999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1998888999889999999999999999999985228767998998999873899989999999
Q gi|254781167|r 234 SNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHIL 297 (322)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~L 297 (322)
..+.... ...+...+..+........ .... .|..+.+ .|++.. ..|.=+
T Consensus 221 ~~gd~~~-----------A~~l~~~~~~l~~~~~~~~-~~~~-~K~~l~~-~G~~~g-~~R~Pl 269 (284)
T cd00950 221 LAGDLEK-----------ARELHRKLLPLIKALFAEP-NPIP-VKAALAL-LGLISG-ELRLPL 269 (284)
T ss_pred HCCCHHH-----------HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHH-CCCCCC-CCCCCC
T ss_conf 8789999-----------9999999999999996587-8899-9999997-699999-979899
No 306
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.22 E-value=0.99 Score=25.19 Aligned_cols=77 Identities=22% Similarity=0.409 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCH
Q ss_conf 99899999887531045377744256413677666889999855899999999985027906999861134566532201
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVAL 136 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~ 136 (322)
.+.+.+.+-|+-+++.|+|.|-| |.-+| +-.|..+.++|+++++.+++||.+-+-- .+-...
T Consensus 152 ht~~yy~~~a~~l~~~G~d~i~i----------KDmaG---ll~P~~a~~LV~alk~~~~lpI~~HtH~-----t~G~~~ 213 (580)
T PRK09282 152 HTLETWVDLAKQLEEMGCDSICI----------KDMAG---LLTPYAAYELVSALKKEVDLPVHLHCHA-----TTGLAT 213 (580)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE----------ECCCC---CCCHHHHHHHHHHHHHHCCCCEEEEECC-----CCCHHH
T ss_conf 63899999999999749988997----------26655---7898999999999998619816998247-----764799
Q ss_pred HHHHHHHCCCCCCHHH
Q ss_conf 4554320001220121
Q gi|254781167|r 137 RNLVKSIKKSGVNGIW 152 (322)
Q Consensus 137 ~~~~~~~~~~g~~~it 152 (322)
..++ .+.++|++.|-
T Consensus 214 a~~l-~A~eAGvdivD 228 (580)
T PRK09282 214 MTYL-KAVEAGVDILD 228 (580)
T ss_pred HHHH-HHHHHCCCEEE
T ss_conf 9999-99984888670
No 307
>PRK08104 consensus
Probab=89.19 E-value=0.72 Score=26.23 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=70.5
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEE
Q ss_conf 578469998269989999988753104537774425641367766688999985589999999998502-7906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA-LSIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~-~~~pvsvK~R 124 (322)
...|++.=+-..+++.....++-+.+-|+..|++-+--|.. .+.++.+++. -++-|-+=+
T Consensus 13 ~~~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlrt~~a------------------~~~I~~l~~~~p~~~vGaGT- 73 (212)
T PRK08104 13 TRGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTPCA------------------LEAIRAIAKEVPEAIVGAGT- 73 (212)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHH------------------HHHHHHHHHHCCCCEEEEEE-
T ss_conf 74986899977999999999999998799889996888149------------------99999999868985685420-
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH---------HHH-----------------HHHHHCCCCCCCCCCCCCH---
Q ss_conf 13456653220145543200012201210---------013-----------------5664025774212276610---
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI---------HAR-----------------KAILKGLSPKDNRKIPNLD--- 175 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti---------H~R-----------------t~~~~g~s~~~~~~~~~~~--- 175 (322)
....+-++.+.++|++.+.- +++ ++...|.+ --...|++
T Consensus 74 ---------V~~~e~~~~ai~aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~---~vKlFPA~~~g 141 (212)
T PRK08104 74 ---------VLNPQQLAEVTEAGAQFAISPGLTEELLKAATEGTIPLIPGISTVSELMLGMDYGLT---EFKFFPAEANG 141 (212)
T ss_pred ---------CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCC---EEEECCCCCCC
T ss_conf ---------267999999998599999848999999999998299765676999999999987999---79978762137
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -467876667388753025777789989888742
Q gi|254781167|r 176 -YDIVYEIKKENPDLFIGLNGGLEDMSQALKILP 208 (322)
Q Consensus 176 -~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~ 208 (322)
-++++.++.-+|+++++..|||. .+.+.+.+.
T Consensus 142 G~~~lkal~~p~p~~~f~ptGGV~-~~N~~~yl~ 174 (212)
T PRK08104 142 GVKALQAISGPFSQIRFCPTGGIT-PANYRDYLA 174 (212)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHH
T ss_conf 499999985558998189648989-889999980
No 308
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=89.19 E-value=0.21 Score=30.11 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66889999855899999999985027906999861134566532201455432000122012100135664025774212
Q gi|254781167|r 90 EGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR 169 (322)
Q Consensus 90 ~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~ 169 (322)
-...|--+.++.+.+.++++.+++. ++.||.=+ +++. +-++.+.+.|++.|-+| |.-|--.-.+.+.
T Consensus 98 TTegGld~~~~~~~L~~~i~~lk~~-~IrvSLFI------DPd~----~qi~~a~~~Gad~VElh--TG~Ya~a~~~~~~ 164 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDA-GIRVSLFI------DPDP----EQIEAAKEVGADRVELH--TGPYANAYDKAER 164 (234)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEE------CCCH----HHHHHHHHHCCCEEEEE--CHHHHHHCCCHHH
T ss_conf 1788926654788999999999865-98279972------7987----89999998493999982--4787863481039
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--HHCCCCEEEECCCCCHHH
Q ss_conf 2766104678766673887530257777899898887--420352344122000124
Q gi|254781167|r 170 KIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI--LPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 170 ~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~--l~~~dgvMigRga~~~P~ 224 (322)
..--.++...+...... .+-+-+ |-=-+.+..... ++..+-|-||.+.+.+--
T Consensus 165 ~~el~~i~~aa~~A~~l-GL~VnA-GHgLn~~Nl~~i~~ip~i~EvnIGHaiI~esl 219 (234)
T cd00003 165 EAELERIAKAAKLAREL-GLGVNA-GHGLNYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEC-CCCCCHHHHHHHHCCCCCEEEECCHHHHHHHH
T ss_conf 99999999999999985-987854-78988767999855899728855799999999
No 309
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=89.13 E-value=0.52 Score=27.24 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=84.8
Q ss_pred ECCCHHHHHHHHHHHHC-CCCCEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
Q ss_conf 26998999998875310-453777442-5641367766688999985589999999998502790699986113456653
Q gi|254781167|r 55 GGADISKLVEAAKIVED-FGYNEINLN-VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIP 132 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~-~g~~~idlN-~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~ 132 (322)
+..+.++....|++..+ .+-++|-|- .|++. .|+.||--..+-.+.+++- +.-|-.-| .++
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY~-----~dD- 140 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPYT-----TDD- 140 (262)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC----------CCCCCHHHHHHHHHHHHHC-CCEEEECC-----CCC-
T ss_conf 558899999999999997069848999936876----------5488757899999999867-98885036-----887-
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
.-++++++++||.++-=-+-- +=.|+ |..+-..+.-+.+.. ++|++.--||-++.||...++ |||
T Consensus 141 ----~v~arrLee~GcaavMPl~aP-IGSg~--------G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~D 206 (262)
T COG2022 141 ----PVLARRLEEAGCAAVMPLGAP-IGSGL--------GLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGAD 206 (262)
T ss_pred ----HHHHHHHHHCCCEEECCCCCC-CCCCC--------CCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf ----899999986496686335665-66786--------757889999999738-9988986798976688999860554
Q ss_pred CEEEECCC
Q ss_conf 23441220
Q gi|254781167|r 212 GVMIGRAA 219 (322)
Q Consensus 212 gvMigRga 219 (322)
+|++-.++
T Consensus 207 aVL~NTAi 214 (262)
T COG2022 207 AVLLNTAI 214 (262)
T ss_pred EEEHHHHH
T ss_conf 32325676
No 310
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=89.11 E-value=1.9 Score=23.11 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 69989999988753104537774425641367766688999985589999999998502790699986113456653220
Q gi|254781167|r 56 GADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
+.+++.+.+.++-..+.||+.+-+..|=+ .+-.|.+++..+-+++-. ++.+.|-.--+| +...
T Consensus 158 ~~~~~~l~~~~~~~~~~G~~~~KikiG~~-----------~~~~D~~rv~avr~avG~--~~~l~vDan~~~----~~~~ 220 (385)
T cd03326 158 GDDLGRLRDEMRRYLDRGYTVVKIKIGGA-----------PLDEDLRRIEAALDVLGD--GARLAVDANGRF----DLET 220 (385)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------CHHHHHHHHHHHHHHHCC--CCEEEEECCCCC----CHHH
T ss_conf 88999999999999967999899948999-----------889999999999997389--873886447678----9999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1455432000122012100135664025774212276610467876667388753025777789989888742
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP 208 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~ 208 (322)
.+.+++.+++.++.++-= ...+-|++..++|.+.. .+||...=.+++..++.+.++
T Consensus 221 Ai~~~~~le~~~l~w~Ee----------------P~~~~d~~~~a~l~~~~-~~PIa~gE~~~s~~~~~~li~ 276 (385)
T cd03326 221 AIAYAKALAPYGLRWYEE----------------PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLR 276 (385)
T ss_pred HHHHHHHHHHCCCCEEEC----------------CCCCCCHHHHHHHHHHC-CCCEECCCCCCCHHHHHHHHH
T ss_conf 999999855329918978----------------89955899999999638-999981888659999999998
No 311
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=89.10 E-value=0.53 Score=27.17 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHH--CCCCCCCC----CCCCCC--HHHHHHHHHCCCCEEEECCCCC
Q ss_conf 104678766673--88753025----777789--9898887420352344122000
Q gi|254781167|r 174 LDYDIVYEIKKE--NPDLFIGL----NGGLED--MSQALKILPSVDGVMIGRAAYK 221 (322)
Q Consensus 174 ~~~~~i~~l~~~--~~~~~i~~----NGdi~~--~~~a~~~l~~~dgvMigRga~~ 221 (322)
.|-+.++++-++ .++++||. +=+|.+ .+++.+. .||||||||=||
T Consensus 221 ~DV~~~R~~L~~~G~~~~~IIaKIE~~~gv~N~a~deI~~a---SDGiMVARGDLG 273 (513)
T TIGR01064 221 EDVEEVREVLEEKGGKDVKIIAKIENQEGVDNDAIDEIAEA---SDGIMVARGDLG 273 (513)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH---HCCEEEEECCCC
T ss_conf 56999999999708898648876368433570679999987---295289765670
No 312
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=89.02 E-value=0.19 Score=30.50 Aligned_cols=181 Identities=14% Similarity=0.152 Sum_probs=79.6
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHCCCHH--------HHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9999828982998170332477608978--------98302745784699982699899999887531045377744256
Q gi|254781167|r 11 FFARLLTNNALLYTEMIVADAILRGDKK--------NILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVG 82 (322)
Q Consensus 11 ~l~r~~~~~~~~~TEmi~a~~l~~~~~~--------~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~G 82 (322)
.+|...|+++.+.-. +.+++ .+.+.... | +-|=|+--++|.+-|.-+.+. .+=|
T Consensus 29 ~~~~~~GadgITvHl--------ReDrRHI~d~Dv~~l~~~~~~--~--lNlE~~~~~emi~ia~~~kP~---qvtL--- 90 (239)
T pfam03740 29 LIAERAGADGITVHL--------REDRRHIQDRDVEVLKELIRT--R--FNIEMAPTEEMLELALKTKPH---QVTL--- 90 (239)
T ss_pred HHHHHCCCCEEEECC--------CCCCCCCCHHHHHHHHHHCCC--C--EEECCCCHHHHHHHHHHCCCC---EEEE---
T ss_conf 999983998689525--------887654523789999997287--4--677568749999999984998---5898---
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 413677-6668899998558999999999850279069998611345665322014554320001220121001356640
Q gi|254781167|r 83 CPSARV-HEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILK 161 (322)
Q Consensus 83 CP~~~v-~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~ 161 (322)
-|-++- .-...|--+-.+-+.+.++++.+++. ++.||+=+ +++. +-++.+.+.|++.|-+| |.-|-
T Consensus 91 VPE~r~elTTegGld~~~~~~~L~~~i~~lk~~-girvSlFI------Dpd~----~~i~~a~~~Gad~VElh--TG~YA 157 (239)
T pfam03740 91 VPEKREEITTEGGLDVVAQLEKLKPAIRRLKNA-GIRVSLFI------DPDP----EQIEAAKIVGADRIELH--TGPYA 157 (239)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEE------CCCH----HHHHHHHHCCCCEEEEE--CHHHH
T ss_conf 889998735688806334068999999998607-85389970------7998----99999998092999850--47788
Q ss_pred C-CC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--HHCCCCEEEECCCCCHHH
Q ss_conf 2-57-742122766104678766673887530257777899898887--420352344122000124
Q gi|254781167|r 162 G-LS-PKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI--LPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 162 g-~s-~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~--l~~~dgvMigRga~~~P~ 224 (322)
- .+ +++.+..--.++....+..... .+-+-+ |-=-+++..... +.+.+-|-||.+.+.+--
T Consensus 158 ~a~~~~~~~~~~~l~~i~~aa~~A~~l-GL~VnA-GHgLn~~Nl~~l~~i~~i~EvnIGHaiI~~al 222 (239)
T pfam03740 158 DAHNDAEQAREELLERLAAGAALAFDL-GLVVNA-GHGLTYHNVKPVAKIPPIAELNIGHSLVAEAL 222 (239)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHC-CCEEEC-CCCCCHHHHHHHHCCCCCEEEECCHHHHHHHH
T ss_conf 775131555799999999999999874-985746-78988766999852899748855699999999
No 313
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=88.96 E-value=0.95 Score=25.31 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=39.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCEEEEEEEEC
Q ss_conf 69998269989999988753104537774425641367766688999985589999----99999850279069998611
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVG----DCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~----~iv~~~~~~~~~pvsvK~Rl 125 (322)
-.-||..+|-.-..+|.+.++++ ....|-+++--. .+-.+..+=|...-+.. .--+.+.+ ..+-+=|
T Consensus 81 ~~~~i~~aN~~R~QEalRvLEE~-~kl~~~~~~~~~---~~iRY~lY~LE~~ll~~~~~~~~~~~l~~---~~Lylit-- 151 (345)
T PRK02615 81 TLEQVVSANCARVQEALRVLEEF-GKLYDPELAAIA---KQIRYELYTLESELLNASLGKKRRQRLKD---ARLYLIT-- 151 (345)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHH---CCEEEEE--
T ss_conf 99999998789999999999998-610688899999---99999999999999985220679999975---8889996--
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHH
Q ss_conf 3456653220145543200012201210
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~iti 153 (322)
.+.+.+.+.++.+.+.|++.|-.
T Consensus 152 -----~~~~~l~~~Ve~AL~gGv~ivQl 174 (345)
T PRK02615 152 -----SPSEDLLEVVEAALKAGVKLVQY 174 (345)
T ss_pred -----CCCCCHHHHHHHHHHCCCCEEEE
T ss_conf -----89634999999999759988983
No 314
>PRK08782 consensus
Probab=88.96 E-value=0.37 Score=28.30 Aligned_cols=139 Identities=13% Similarity=0.160 Sum_probs=75.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE
Q ss_conf 5784699982699899999887531045377744256413677666889999855899999999985027-906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~R 124 (322)
.+.+++.=+-..+++...+.++-+.+-|+..|++-+--|. ..++++.+++.. ++-|-+=+=
T Consensus 15 ~~~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt~~------------------a~~~i~~l~~~~p~~~vGaGTV 76 (219)
T PRK08782 15 RDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPV------------------AIEALAMLKRELPNIVIGAGTV 76 (219)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH------------------HHHHHHHHHHHCCCCEEEEEEE
T ss_conf 8789789997599999999999999879987999679933------------------9999999998689947999970
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH---------HHH-----------------HHHHHCCCCCCCCCCCCCH---
Q ss_conf 13456653220145543200012201210---------013-----------------5664025774212276610---
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI---------HAR-----------------KAILKGLSPKDNRKIPNLD--- 175 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti---------H~R-----------------t~~~~g~s~~~~~~~~~~~--- 175 (322)
...+-++.+.++|++.+.- .++ ++...|.+ --...|+.
T Consensus 77 ----------~~~e~~~~a~~aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpSEi~~A~~~G~~---~vKlFPA~~~G 143 (219)
T PRK08782 77 ----------LSERQLRQSVDAGADFLVTPGTPAPLARLLADAPIPAVPGAATPTELLTLMGLGFR---VCKLFPATAVG 143 (219)
T ss_pred ----------CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCC---EEEECCCHHCC
T ss_conf ----------58999999998499899878997999999998199764785999999999987999---89977732208
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf -46787666738875302577778998988874203523441
Q gi|254781167|r 176 -YDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIG 216 (322)
Q Consensus 176 -~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMig 216 (322)
-.+++.++.-+|+++++..|||. .+.+.+.+....-+.+|
T Consensus 144 g~~~lkal~~pfp~~~f~pTGGV~-~~N~~~yl~~~~v~~vg 184 (219)
T PRK08782 144 GLQMLKGLAGPLSELKLCPTGGIS-ETNAAEFLSQPNVLCIG 184 (219)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHHCCCEEEEE
T ss_conf 499999984769998187679989-87899998079939998
No 315
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=88.96 E-value=0.81 Score=25.82 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=30.1
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHC------------CCCEEEECCCCCH
Q ss_conf 3887530257777899898887420------------3523441220001
Q gi|254781167|r 185 ENPDLFIGLNGGLEDMSQALKILPS------------VDGVMIGRAAYKN 222 (322)
Q Consensus 185 ~~~~~~i~~NGdi~~~~~a~~~l~~------------~dgvMigRga~~~ 222 (322)
+.++++++.-|+|-+++++..+++| +||+++|..++.-
T Consensus 210 ~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 210 SRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CCCCEEEEECCCCCCHHHCCCCCCCCHHHHCCCCCCCCCEEEECHHHHHH
T ss_conf 57977999668768812112000541065429998874515752567764
No 316
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=88.94 E-value=1.9 Score=23.10 Aligned_cols=151 Identities=13% Similarity=0.208 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHH-------HHHHC-----CCCCCC-EEEEE-ECC---CHHHHHHH-
Q ss_conf 86078999999828982998170332477608978-------98302-----745784-69998-269---98999998-
Q gi|254781167|r 4 WTDRHYRFFARLLTNNALLYTEMIVADAILRGDKK-------NILGF-----STQEKP-LALQI-GGA---DISKLVEA- 65 (322)
Q Consensus 4 ~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~-------~~~~~-----~~~e~p-~~~Ql-~g~---~p~~~~~a- 65 (322)
.-|++|=+++.+.|.|.+++-.=+ --.+++.+. .++.+ ....++ ++.-+ ||+ ++++..+.
T Consensus 24 ayd~~~A~~~d~~giD~iLVGDSl--gmv~~G~~~T~~vtld~mi~H~~aV~rg~~~~~vv~DmPf~sy~~s~~~a~~nA 101 (266)
T PRK00311 24 AYDASFARLFDEAGVDVILVGDSL--GMVVLGYDSTLPVTLDDMIYHTKAVRRGAPRALVVADMPFGSYQASPEQALRNA 101 (266)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCH--HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 089999999997599889977538--764067756661678999999999984088853995798764689999999999
Q ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC---------CCC----CCCC
Q ss_conf 875310453777442564136776668899998558999999999850279069998611---------345----6653
Q gi|254781167|r 66 AKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI---------GVD----DQIP 132 (322)
Q Consensus 66 a~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl---------G~~----~~~~ 132 (322)
.+++.+.|+|.|-|--|-- ..+++++++++ ++||---+=| |+. +.+.
T Consensus 102 ~rl~ke~gadaVKlEgg~~-------------------~~~~i~~l~~~-GIPV~gHiGL~PQ~~~~~GG~r~qGkt~~e 161 (266)
T PRK00311 102 GRLMKEAGAHAVKLEGGEE-------------------LAETIRRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEA 161 (266)
T ss_pred HHHHHHCCCCEEEECCCCC-------------------HHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 9999856999899788833-------------------67999999987-997665415765001136886022599999
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
...+.+-++.++++|+..+-+-+=. -+..+++.+.+ .+|+|+-|
T Consensus 162 a~~l~~dA~~le~AGaf~ivlE~Vp------------------~~la~~It~~l-~IPtIGIG 205 (266)
T PRK00311 162 AEQLLEDAKALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG 205 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC------------------HHHHHHHHHCC-CCCEEEEC
T ss_conf 9999999999984795499995586------------------99999999648-99889705
No 317
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=88.93 E-value=1.4 Score=24.04 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=85.8
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE
Q ss_conf 784699982699899999887531045377744-256413677666889999855899999999985027-906999861
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINL-NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCR 124 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idl-N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~R 124 (322)
.-|+ =..+-+|+.|..|++ .|.|.|+| |+-|= -.+| -.-..+.+-++.+..++-. ++|+||.+-
T Consensus 61 ~lPi--CVSaVep~~f~~aV~----AGA~lvEIGNfDsF----Y~qG----r~f~a~eVL~Lt~~Tr~LLP~~~LsVTVP 126 (243)
T pfam04481 61 NIPI--CVSAVEPELLYEAVL----AGADLVEIGNFDSF----YKQG----RVLSVCEIIALVKETRKLLPHTPLCVTIP 126 (243)
T ss_pred CCCE--EEECCCHHHHHHHHH----HCCCEEEECCHHHH----HHCC----CEECHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 9985--860479788899998----27878986453647----6547----66449999999999997689984477457
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 13456653220145543200012201210013566402577421227661--0467876667388753025777789989
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNL--DYDIVYEIKKENPDLFIGLNGGLEDMSQ 202 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~--~~~~i~~l~~~~~~~~i~~NGdi~~~~~ 202 (322)
-- -+-+.-.+++..++++|+|.|---|-|.... .++.-+.-+-.+ -....+.+.+.+ ++||+.--|+.+..-
T Consensus 127 Hi----L~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p-~~~g~~glIekaapTLAaay~IS~~v-~vPVlcASGlS~vT~ 200 (243)
T pfam04481 127 HI----LKLKEQINLAKQLESLGIDLIQTEGKITSIS-KNHCVNDLIEKSASTLASTYEISKHV-QLPVICASGLSDVTV 200 (243)
T ss_pred CC----CCHHHHHHHHHHHHHHCCCEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCEEECCCCCHHHH
T ss_conf 63----5678999999999981887787289877788-88425777988758899999998617-876675467642147
Q ss_pred HHHHHHCCCCEEEECC
Q ss_conf 8887420352344122
Q gi|254781167|r 203 ALKILPSVDGVMIGRA 218 (322)
Q Consensus 203 a~~~l~~~dgvMigRg 218 (322)
-.....|+.||=||-.
T Consensus 201 PmAiaaGAsGVGVGSa 216 (243)
T pfam04481 201 PLAFSYGASGIGIGSA 216 (243)
T ss_pred HHHHHCCCCCCCHHHH
T ss_conf 8899748771006577
No 318
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.89 E-value=2 Score=23.01 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHCCCCCCHHHH
Q ss_conf 220145543200012201210
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~iti 153 (322)
.+.+.++++.++++|++.|+|
T Consensus 153 ~~yyv~~a~~l~~~Gad~I~i 173 (463)
T PRK12331 153 IDYFVKLAKEMQEIGADSICI 173 (463)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999649988998
No 319
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=88.69 E-value=0.24 Score=29.75 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 88999985589999999998502790699986113456653220145543200012201210013
Q gi|254781167|r 92 SFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 92 g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
..|--+.++.+.+.++++.+++ .++.||.=+ +++ .+-++.+.+.|++.|-+|.=
T Consensus 103 egGld~~~~~~~L~~~i~~lk~-~gIrvSLFi------DPd----~~~i~~a~~~Gad~VElhTG 156 (240)
T PRK05265 103 EGGLDVAGQFDKLKPAIARLKD-AGIRVSLFI------DPD----PEQIEAAAEVGADRIELHTG 156 (240)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEE------CCC----HHHHHHHHHHCCCEEEEECH
T ss_conf 8893776578999999999986-598179972------798----78999999849399998347
No 320
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=88.68 E-value=2 Score=22.91 Aligned_cols=147 Identities=17% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHHHCCCCCCCEEEEEE-CCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 98302745784699982-69989999988753104537774425641367766688999985589999999998502790
Q gi|254781167|r 39 NILGFSTQEKPLALQIG-GADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSI 117 (322)
Q Consensus 39 ~~~~~~~~e~p~~~Ql~-g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~ 117 (322)
+++.-...+-|+..-+. ..+++.+.+.++...+.||..+-+..|. + .| .+.+++++++++
T Consensus 117 ~LLGg~~~~i~~~~s~~~~~~~e~~~~~~~~~~~~Gf~~~Kikv~~----------~----~d----i~~v~~ir~~~~- 177 (354)
T cd03317 117 QYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIKP----------G----WD----VEPLKAVRERFP- 177 (354)
T ss_pred HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC----------H----HH----HHHHHHHHHHCC-
T ss_conf 9808987605766871689999999999999997798767640185----------1----25----999999998657-
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 69998611345665322014554320001220121001356640257742122766104678766673887530257777
Q gi|254781167|r 118 PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL 197 (322)
Q Consensus 118 pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi 197 (322)
-+++++--+...+..... .++.+++.++.++- ...++-||+-.+++++.. .+||.+.=.+
T Consensus 178 --d~~l~vDaN~~~~~~~a~-~~~~l~~~~l~~~E----------------eP~~~~d~~~~~~l~~~~-~~pIa~~E~~ 237 (354)
T cd03317 178 --DIPLMADANSAYTLADIP-LLKRLDEYGLLMIE----------------QPLAADDLIDHAELQKLL-KTPICLDESI 237 (354)
T ss_pred --CCEEEEECCCCCCHHHHH-HHHHHCCCCEEEEE----------------CCCCCCCHHHHHHHHCCC-CCCEECCCCC
T ss_conf --973996268888878999-99973306701344----------------468722777765564158-9988818886
Q ss_pred CCHHHHHHHHH--CCCCEEEECCCCCHHH
Q ss_conf 89989888742--0352344122000124
Q gi|254781167|r 198 EDMSQALKILP--SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 198 ~~~~~a~~~l~--~~dgvMigRga~~~P~ 224 (322)
.+..++.++++ .+|.|.+-=.-.|=..
T Consensus 238 ~~~~~~~~~i~~~a~div~~d~~~~GGit 266 (354)
T cd03317 238 QSAEDARKAIELGACKIINIKPGRVGGLT 266 (354)
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCHH
T ss_conf 88788999987699764654565367099
No 321
>PRK07094 biotin synthase; Provisional
Probab=88.64 E-value=1.6 Score=23.56 Aligned_cols=176 Identities=17% Similarity=0.222 Sum_probs=86.9
Q ss_pred HHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
Q ss_conf 99982898299817033247760897898302745784699982699899999887531045377744256413677666
Q gi|254781167|r 12 FARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEG 91 (322)
Q Consensus 12 l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~ 91 (322)
+-+++-|+.....-.|+....+..+ =.+..+..... .++-+.=+++++.++|+...+.|+..|-+-.|=-
T Consensus 28 iR~~~~G~~V~l~~iIn~Sn~C~ed-C~yC~~~~~n~--~~~rY~Ls~eeI~~~A~~a~~~G~~~~~lqsG~~------- 97 (323)
T PRK07094 28 VRKKYVGDEVHLRGLIEFSNYCRRN-CLYCGLRRSNK--NIKRYRLSPEEILECAKKAYELGYGTIVLQSGED------- 97 (323)
T ss_pred HHHHHCCCEEEEEEEEEECCCCCCC-CCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-------
T ss_conf 9999779968999879846899999-93478766789--9774379999999999999986998899964899-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH---HHHCCCCCCC
Q ss_conf 8899998558999999999850279069998611345665322014554320001220121001356---6402577421
Q gi|254781167|r 92 SFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKA---ILKGLSPKDN 168 (322)
Q Consensus 92 g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~---~~~g~s~~~~ 168 (322)
.-.+.+.+.++++++++.+++.|++ -+|. .+. +-++.+.++|++....--=|. .+.-+.|..
T Consensus 98 -----~~~~~e~~~~ii~~Ik~~~~l~i~l--SlG~---l~~----e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~- 162 (323)
T PRK07094 98 -----PYYTDEKIADIIKEIKKELDVAITL--SLGE---RSY----EEYKAWKEAGADRYLLRHETADRELYEKLHPGM- 162 (323)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCCEEEE--ECCC---CCH----HHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCC-
T ss_conf -----8866999999999986059945997--5787---999----999999985977441245656989867758999-
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCC-----CCHHHHHHHH---HCCCCEEEEC
Q ss_conf 22766104678766673887530257777-----8998988874---2035234412
Q gi|254781167|r 169 RKIPNLDYDIVYEIKKENPDLFIGLNGGL-----EDMSQALKIL---PSVDGVMIGR 217 (322)
Q Consensus 169 ~~~~~~~~~~i~~l~~~~~~~~i~~NGdi-----~~~~~a~~~l---~~~dgvMigR 217 (322)
-| .-+++.+..+++.. +.+ +.|.| .|.+|-.+++ ...+-=|||=
T Consensus 163 t~--~~Rl~~l~~~k~~G--~~v-~sG~iiGlpGET~edr~~~l~~LreL~~~~v~i 214 (323)
T PRK07094 163 SF--ENRIQCLKDLKELG--YEV-GSGFMVGLPGQTLEDLADDILFLKELDLDMIGI 214 (323)
T ss_pred CH--HHHHHHHHHHHHCC--CCC-CCEEEECCCCCCHHHHHHHHHHHHHCCCCEECC
T ss_conf 98--99999999999839--810-430277989999999999999998379988677
No 322
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.32 E-value=2.1 Score=22.75 Aligned_cols=188 Identities=19% Similarity=0.230 Sum_probs=103.8
Q ss_pred HHHHHHHH---HCCCEEEECCCCCCHHHH--CCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89999998---289829981703324776--08978983----0274578469998269989999988753104537774
Q gi|254781167|r 8 HYRFFARL---LTNNALLYTEMIVADAIL--RGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 8 ~fR~l~r~---~~~~~~~~TEmi~a~~l~--~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
.+|++++. .|.++++..-. +..... ...+++++ +.....-|+++++.+.+.++..+-++.+++.|+|.|=
T Consensus 19 ~~~~~i~~l~~~Gv~gi~v~G~-tGE~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~s~~~~~~~a~~a~~~Gad~i~ 97 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGT-TGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVL 97 (281)
T ss_pred HHHHHHHHHHHCCCCEEEECEE-CCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999769998996854-524313899999999999999808985099957878899999999999975999899
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCCCCCCCCHHHHHHHHCCCCCCHH-HHH
Q ss_conf 425641367766688999985589999999998502790699986---1134566532201455432000122012-100
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC---RIGVDDQIPAVALRNLVKSIKKSGVNGI-WIH 154 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~---RlG~~~~~~~~~~~~~~~~~~~~g~~~i-tiH 154 (322)
+- -|. -.+ .+.+-+.+-.+++.+++++||-+=- +.|. ....+++..+.+ ...| .|
T Consensus 98 v~--pP~--y~~--------~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~------~l~~~~l~~L~~--~~nv~gi- 156 (281)
T cd00408 98 VV--PPY--YNK--------PSQEGIVAHFKAVADASDLPVILYNIPGRTGV------DLSPETIARLAE--HPNIVGI- 156 (281)
T ss_pred EC--CCC--CCC--------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCHHHHHHHHC--CCCEEEE-
T ss_conf 87--997--778--------99999999999998555997799727753167------768999999848--9998999-
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 13566402577421227661046787666738-8753025777789989888-742035234412200012439999998
Q gi|254781167|r 155 ARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALK-ILPSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 155 ~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~-~l~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
|+ .. .|+..+.++.+.. +++.+ .+|+ + ..... +.-|++|.+.|=+.+ -|..+.++-+.
T Consensus 157 -----------K~--s~--~d~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~l~~G~~G~i~~~~n~-~P~~~~~l~~~ 216 (281)
T cd00408 157 -----------KD--SS--GDLDRLTRLIALLGPDFAV-LSGD--D-DLLLPALALGADGAISGAANV-APKLAVALYEA 216 (281)
T ss_pred -----------EC--CC--CCHHHHHHHHHHCCCCCEE-ECCC--H-HHHHHHHHCCCCCEEECHHHC-CHHHHHHHHHH
T ss_conf -----------84--88--9999999999975997056-2696--6-889999872898144024231-69999999999
Q ss_pred HCCCC
Q ss_conf 71998
Q gi|254781167|r 233 FSNPL 237 (322)
Q Consensus 233 l~~~~ 237 (322)
+..+.
T Consensus 217 ~~~gd 221 (281)
T cd00408 217 ARAGD 221 (281)
T ss_pred HHCCC
T ss_conf 98789
No 323
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.31 E-value=0.76 Score=26.03 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=76.6
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC--CEEEEEEEE-CCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 777442564136776668899998----55899999999985027--906999861-13456653220145543200012
Q gi|254781167|r 75 NEINLNVGCPSARVHEGSFGACLM----LNPDIVGDCIAAMCKAL--SIPVTVKCR-IGVDDQIPAVALRNLVKSIKKSG 147 (322)
Q Consensus 75 ~~idlN~GCP~~~v~~~g~GaaLl----~~p~~~~~iv~~~~~~~--~~pvsvK~R-lG~~~~~~~~~~~~~~~~~~~~g 147 (322)
-.+--+-.||...|.+...|-.+. .++++..++++...++- -+-|||-+- .|+.+.+ ..+-..+-.......
T Consensus 97 ~~lSt~ss~s~EeVa~~~~g~~wfQLY~~~r~~~~~li~RA~~aG~~alvlTvD~pv~G~Rerd-~rngf~~P~~~~~~~ 175 (361)
T cd04736 97 FVLSTASNMSIEDVARQADGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERD-LRNGFAIPFRYTPRV 175 (361)
T ss_pred EEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH-HHCCCCCCCCCCHHH
T ss_conf 8967999999999986259984799887287999999999998599868995078887888354-322567886556778
Q ss_pred CCHHHHHHHHHHHH---C------CCC------------CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 20121001356640---2------577------------42122766104678766673887530257777899898887
Q gi|254781167|r 148 VNGIWIHARKAILK---G------LSP------------KDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 148 ~~~itiH~Rt~~~~---g------~s~------------~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~ 206 (322)
+.....|+|-.... | ..+ -.....+..+|+.+..+++.. ..|++ -=||.+.+||...
T Consensus 176 ~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w-~~pli-lKGI~~~eDA~~A 253 (361)
T cd04736 176 LLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLW-PHKLL-VKGIVTAEDAKRC 253 (361)
T ss_pred HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCEE-EECCCCHHHHHHH
T ss_conf 877515938899765027731023467777770578899884368899999999999866-99745-5214899999999
Q ss_pred HH-CCCCEEE----ECCCCCHHHH
Q ss_conf 42-0352344----1220001243
Q gi|254781167|r 207 LP-SVDGVMI----GRAAYKNSAM 225 (322)
Q Consensus 207 l~-~~dgvMi----gRga~~~P~i 225 (322)
.+ |+|||+| ||..=+-|.-
T Consensus 254 ~~~G~dgIiVSNHGGRQLD~a~~~ 277 (361)
T cd04736 254 IELGADGVILSNHGGRQLDDAIAP 277 (361)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCH
T ss_conf 876999999758863335777414
No 324
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.23 E-value=1.6 Score=23.56 Aligned_cols=149 Identities=15% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCCCEEEEEECC---CHHHH----HHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 578469998269---98999----99887531045377--7442564136776668899998558999999999850279
Q gi|254781167|r 46 QEKPLALQIGGA---DISKL----VEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS 116 (322)
Q Consensus 46 ~e~p~~~Ql~g~---~p~~~----~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~ 116 (322)
.+.|++++|-++ .|... ....+-+..+|.|. +-+|.|-... -+..+.+.++.....+ .+
T Consensus 76 ~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----------~~~i~~~~~v~~~a~~-~G 143 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE-----------REMIENISQVVEDAHE-LG 143 (265)
T ss_pred CCCCEEEEECCCCCCCCCCCCCEEEEEHHHHHHCCCCEEEEEEECCCCCH-----------HHHHHHHHHHHHHHHH-CC
T ss_conf 77677999646665677864311234098897478747999996687625-----------8999999999999987-09
Q ss_pred EEE--EEEEECC-CCC--CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 069--9986113-456--65322014554320001220121001356640257742122766104678766673887530
Q gi|254781167|r 117 IPV--TVKCRIG-VDD--QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFI 191 (322)
Q Consensus 117 ~pv--svK~RlG-~~~--~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i 191 (322)
.|+ ++=-|-- +.+ ..+.+.+--.++...+.|+|.|-+ .|.+ +-+..+++.+.-+ .||
T Consensus 144 mp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~---------------~ytg--~~e~F~~vv~~~~-vpV 205 (265)
T COG1830 144 MPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT---------------KYTG--DPESFRRVVAACG-VPV 205 (265)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---------------CCCC--CHHHHHHHHHHCC-CCE
T ss_conf 964998813587765444336899999999999865776861---------------5999--8478999997189-987
Q ss_pred CCCCCCCC--HHHHHHHH-----HCCCCEEEECCCCCHHH
Q ss_conf 25777789--98988874-----20352344122000124
Q gi|254781167|r 192 GLNGGLED--MSQALKIL-----PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 192 ~~NGdi~~--~~~a~~~l-----~~~dgvMigRga~~~P~ 224 (322)
+..|+-.+ .++++++. .|.-|+-+||-++..|.
T Consensus 206 viaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 206 VIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 9847988897499999999999835730333103324688
No 325
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.19 E-value=2.2 Score=22.69 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=43.1
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 99826-99899999887531045377744256413677666889999855899999999985027906999861134566
Q gi|254781167|r 52 LQIGG-ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQ 130 (322)
Q Consensus 52 ~Ql~g-~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~ 130 (322)
+-||| .+++++..| .++|+|.|-+++=.++|+- -+|+.+.++.+.+...+ .+|.|=. +
T Consensus 3 IKICGit~~eda~~a----~~~gaD~iGfif~~~SpR~----------i~~~~a~~i~~~~~~~~-~~VgVfv------n 61 (207)
T PRK13958 3 LKFCGFTSIKDVTAA----SQLPIDAIGFIHYEKSKRH----------QTITQIKKLASAVPNHI-DKVCVMV------N 61 (207)
T ss_pred EEEECCCCHHHHHHH----HHCCCCEEEEECCCCCCCC----------CCHHHHHHHHHHCCCCC-CEEEEEE------C
T ss_conf 989189979999999----9689999999557899986----------59999999998655468-8699994------6
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 53220145543200012201210013
Q gi|254781167|r 131 IPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
++. .++.+.+...+.+.+-+||-
T Consensus 62 ~~~---~~i~~~~~~~~ld~vQlHG~ 84 (207)
T PRK13958 62 PDL---TTIEHVLSNTSINTIQLHGT 84 (207)
T ss_pred CCH---HHHHHHHHHCCCCEEEECCC
T ss_conf 979---99999998579977986489
No 326
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.00 E-value=2.2 Score=22.61 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-H---HHH--------HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5784699982699899999887531045377744256413677-6---668--------899998558999999999850
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARV-H---EGS--------FGACLMLNPDIVGDCIAAMCK 113 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v-~---~~g--------~GaaLl~~p~~~~~iv~~~~~ 113 (322)
.+.|++.=+-+.+++.....++.+.+-|+..|++-+--|...- . +.. -|++=..+++.+.+.+++=.
T Consensus 11 ~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~~~~p~~~iGaGTV~~~e~~~~a~~aGA- 89 (209)
T PRK06552 11 KANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERYKDDPEVLIGAGTVLDAVTARQAILAGA- 89 (209)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCC-
T ss_conf 9799799997289999999999999879988999678975999999999981779981898872748999999998599-
Q ss_pred CCCEEEEEEE---------ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2790699986---------1134566532201455432000122012100135664025774212276610467876667
Q gi|254781167|r 114 ALSIPVTVKC---------RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKK 184 (322)
Q Consensus 114 ~~~~pvsvK~---------RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~ 184 (322)
+.=||-=+ +.|..--+...+--|+.. +.+.|++.+-+-|= +. .| -++++.++.
T Consensus 90 --~FiVSP~~~~~v~~~a~~~~i~~iPG~~TpsEi~~-A~~~Ga~~vKlFPA----------~~--~G---~~yikal~~ 151 (209)
T PRK06552 90 --QFIVSPSFNRETAKICNRYQIPYLPGCMTVTEIVT-ALEAGVDIVKLFPG----------ST--VG---PSFISAIKG 151 (209)
T ss_pred --CEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHH-HHHCCCCEEEECCH----------HH--CC---HHHHHHHHC
T ss_conf --88976999899999999859964179799999999-99869995885833----------32--48---999999866
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCC
Q ss_conf 388753025777789989888742-03523441220
Q gi|254781167|r 185 ENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAA 219 (322)
Q Consensus 185 ~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga 219 (322)
-+|+++++.-|||+ .+.+.+.+. |+.+|=+|-..
T Consensus 152 p~p~~~~~ptGGV~-~~N~~~~l~aG~~~vgvGs~l 186 (209)
T PRK06552 152 PLPQVNIMVTGGVS-LDNVKDWFAAGADAVGIGGEL 186 (209)
T ss_pred CCCCCCEEECCCCC-HHHHHHHHHCCCCEEEECHHH
T ss_conf 48999288638999-888999998799889986577
No 327
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=87.95 E-value=0.76 Score=26.04 Aligned_cols=132 Identities=27% Similarity=0.380 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC---------------------------------
Q ss_conf 36776668899998558999999999850279069998611345665---------------------------------
Q gi|254781167|r 85 SARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQI--------------------------------- 131 (322)
Q Consensus 85 ~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~--------------------------------- 131 (322)
.|.=.+..++-+-|.||..+.++..+ +++||-.|+|+|.--+.
T Consensus 40 ~Pad~r~~G~v~rm~dP~~~~~~~~a----v~iPvmak~riGh~~ea~~le~~~vd~idesevl~~ad~~~h~~k~~f~v 115 (298)
T TIGR00343 40 VPADIRAAGGVARMSDPKLIKEIMDA----VSIPVMAKVRIGHFVEAQVLEALGVDYIDESEVLTPADERFHIDKKKFKV 115 (298)
T ss_pred CCHHHHHCCCEECCCCHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 22667741870002473899999853----13211211111046889899874356101024420222444201012002
Q ss_pred ----CCCCHHHHHHHHCCCCCCHHH--------------HHHHHHHH------H--------CCCCC-CCCCCCCCHHHH
Q ss_conf ----322014554320001220121--------------00135664------0--------25774-212276610467
Q gi|254781167|r 132 ----PAVALRNLVKSIKKSGVNGIW--------------IHARKAIL------K--------GLSPK-DNRKIPNLDYDI 178 (322)
Q Consensus 132 ----~~~~~~~~~~~~~~~g~~~it--------------iH~Rt~~~------~--------g~s~~-~~~~~~~~~~~~ 178 (322)
....+-+-++++. .|+.+|- -|-|.-.. + |+... .+...-..-++.
T Consensus 116 PfvCGa~~lGea~rri~-eGa~m~rtkGe~GtG~~~~av~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (298)
T TIGR00343 116 PFVCGARDLGEALRRIA-EGAAMIRTKGEAGTGDIVEAVRHMRLINEEIRELQKKLEEEEELGLAAEAKENEELEVPVEL 194 (298)
T ss_pred CEEECCHHHHHHHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21426446788999887-31365322688886559999999999999999999864456766788887666777899999
Q ss_pred HHHHHHHCCCCCC--CCCCCCCCHHHHHHHHH-CCCCEEEECCCCCH
Q ss_conf 8766673887530--25777789989888742-03523441220001
Q gi|254781167|r 179 VYEIKKENPDLFI--GLNGGLEDMSQALKILP-SVDGVMIGRAAYKN 222 (322)
Q Consensus 179 i~~l~~~~~~~~i--~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~ 222 (322)
+..+++.. .+|+ ++.|+|.++.||.-++. |+|||.+|.|++..
T Consensus 195 ~~~~~~~G-~lPvvnfaaGGvatPadaal~mqlG~~GvfvGsGifks 240 (298)
T TIGR00343 195 LKEVKKEG-KLPVVNFAAGGVATPADAALLMQLGADGVFVGSGIFKS 240 (298)
T ss_pred HHHHHHCC-CCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 99998638-97446413576465578999998477824753420005
No 328
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=87.84 E-value=2 Score=22.98 Aligned_cols=92 Identities=21% Similarity=0.411 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHCCCCCCHHHH-----HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHH
Q ss_conf 3220145543200012201210-----013566402577421227661046787666738875302577--778998988
Q gi|254781167|r 132 PAVALRNLVKSIKKSGVNGIWI-----HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG--GLEDMSQAL 204 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~iti-----H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG--di~~~~~a~ 204 (322)
+.....+|+ +.+|+|-|.| ||=. + .+|.+|++....+++.+ ++|++.=| ||-+ |+..
T Consensus 154 dP~~A~~Fv---e~TGvDSLAvAIGTAHGlY---~--------~aP~LDF~RL~~IR~~v-~vPLVLHGASdvpd-e~v~ 217 (282)
T TIGR01858 154 DPDEAKEFV---EATGVDSLAVAIGTAHGLY---K--------EAPKLDFDRLAKIREKV-DVPLVLHGASDVPD-EDVR 217 (282)
T ss_pred CHHHHHHHH---HHCCCHHHHHHHHHHHHHH---H--------CCCCCCHHHHHHHHHCC-CCCEEECCCCCCCH-HHHH
T ss_conf 968999998---7427547889886653232---1--------26753378998752203-77724217778876-7899
Q ss_pred HHHH-CCCCEEEECCCCCHHHHHHH-HHHHHCCCCCCCCC
Q ss_conf 8742-03523441220001243999-99987199888899
Q gi|254781167|r 205 KILP-SVDGVMIGRAAYKNSAMLTT-VDEYFSNPLTGSSP 242 (322)
Q Consensus 205 ~~l~-~~dgvMigRga~~~P~if~~-I~~~l~~~~~~~~p 242 (322)
++.+ |.-=|=||.- |++| |++ ++.||........|
T Consensus 218 ~~IeLGi~KvNVATe-LKiA--FS~AlK~Yf~enp~AnDP 254 (282)
T TIGR01858 218 RTIELGICKVNVATE-LKIA--FSGALKAYFLENPEANDP 254 (282)
T ss_pred HHHHHCCCEEECCHH-CCHH--HHHHHHHHHHHCCCCCCC
T ss_conf 998707413411111-0036--899999999748899983
No 329
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.84 E-value=2.3 Score=22.54 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=69.4
Q ss_pred CCCC-EEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEE
Q ss_conf 5784-699982699899999887531045377744256413677666889999855899999999985027-90699986
Q gi|254781167|r 46 QEKP-LALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKC 123 (322)
Q Consensus 46 ~e~p-~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~ 123 (322)
.-+| +.+-|.|.+++++.+.++.+...++|.|.+-+-+=.. ..+++.+.+++..+++.. ++|+=+-+
T Consensus 13 ~g~pkIcvpi~~~t~~e~~~~~~~~~~~~aDlvE~RlD~l~~-----------~~~~~~~~~~~~~i~~~~~~~PlI~T~ 81 (253)
T PRK02412 13 EGAPKIVVPIMAKTIEEVAQEAEAIKYADADIIEWRADFLEK-----------VSDVEEVLAAAPAIREKFPGKPLLFTF 81 (253)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-----------CCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999789999678999999999999844699989996031345-----------699999999999999846899789992
Q ss_pred ECCCCCC---CCCCCHHHHHHHHCCCC-CCHHHHH
Q ss_conf 1134566---53220145543200012-2012100
Q gi|254781167|r 124 RIGVDDQ---IPAVALRNLVKSIKKSG-VNGIWIH 154 (322)
Q Consensus 124 RlG~~~~---~~~~~~~~~~~~~~~~g-~~~itiH 154 (322)
|.-++.. -+.+...++.+.+.+.| +++|-|-
T Consensus 82 R~~~EGG~~~~~e~~~~~il~~~~~~~~~d~iDiE 116 (253)
T PRK02412 82 RTAKEGGEIELSDEEYLALYKAVIESGLPDYIDVE 116 (253)
T ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 47443898669999999999999975998579753
No 330
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=87.79 E-value=0.87 Score=25.61 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=48.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 43200012201210013566402577421227661046787666738875302577778998988874-20352344122
Q gi|254781167|r 140 VKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 140 ~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRg 218 (322)
+..+.+.|+|.+++=+- +...| |.+ .++..|+.+.++.+.. .+|+++-|||+. +++.... .|++||-+=++
T Consensus 108 ~~~a~~~gaDYi~~gpv---f~T~s-K~~--~~~~g~~~~~~~~~~~-~~Pv~AiGGI~~-~n~~~~~~~Ga~gvAvis~ 179 (180)
T pfam02581 108 ALEAEALGADYIGFGPV---FPTPT-KPD--APPLGLEGLRAIAEAV-NIPVVAIGGITP-ENVPEVLEAGADGVAVVSA 179 (180)
T ss_pred HHHHHHCCCCCEEECCC---CCCCC-CCC--CCCCCHHHHHHHHHHC-CCCEEEECCCCH-HHHHHHHHCCCCEEEEECC
T ss_conf 99998719980887476---77799-999--8878989999999858-999999909899-9999999859988999650
No 331
>PTZ00066 pyruvate kinase; Provisional
Probab=87.74 E-value=0.53 Score=27.21 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred HHCCCCEEEECCCCCHHHHH-------HHHH--------------HHHCCCCCCCCCCHHHH
Q ss_conf 42035234412200012439-------9999--------------98719988889998899
Q gi|254781167|r 207 LPSVDGVMIGRAAYKNSAML-------TTVD--------------EYFSNPLTGSSPIKTRV 247 (322)
Q Consensus 207 l~~~dgvMigRga~~~P~if-------~~I~--------------~~l~~~~~~~~p~~~~~ 247 (322)
++.+|||||+||=++-=-=+ ++|- +.+......+.|+..|.
T Consensus 271 i~~sDgIMVARGDLgvEip~e~vp~~QK~II~~c~~~gKPVIvATqmLeSMi~np~PTRAEv 332 (513)
T PTZ00066 271 LAESDGIMVARGDLGMEIPPEKVFLAQKLMISKCNLQGKPIITATQMLESMIKNPRPTRAES 332 (513)
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCHHHH
T ss_conf 98589899956854242698886899999999999759969997425777404999871667
No 332
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=87.73 E-value=0.8 Score=25.89 Aligned_cols=146 Identities=18% Similarity=0.290 Sum_probs=82.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---E---
Q ss_conf 57846999826998999998875310453777442--564136776668899998558999999999850279---0---
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLN--VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS---I--- 117 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN--~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~---~--- 117 (322)
---|+++-+.=|||-....-|.-+ ++|.|=+| .|--+ +-.| ++ .-.+.|+++= ++-++ +
T Consensus 81 v~~PlGiNvLrNDa~aa~~iA~~v---~A~FiRVn~L~G~~~---sD~G----~~--eg~a~E~~ry-~~~~~sG~v~~l 147 (261)
T TIGR00259 81 VSIPLGINVLRNDAVAALAIAKAV---GAKFIRVNVLTGVAA---SDQG----II--EGNAGELLRY-KKLLGSGEVKIL 147 (261)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHH---CCCEEEEEEEEEEEE---CCCC----CE--ECCHHHHHHH-HHCCCCCCEEEE
T ss_conf 204641012123477789886764---772689853321255---3674----00--0416543343-312676645630
Q ss_pred -EEEEEEECCCCCCCCCCCHHHH-HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -6999861134566532201455-43200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 118 -PVTVKCRIGVDDQIPAVALRNL-VKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 118 -pvsvK~RlG~~~~~~~~~~~~~-~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
-|.||-=.-+. ...+... ...+++.=+|+|+|=|.|+ -.+.|.+-.+..|+.+++.||+.|-
T Consensus 148 adv~vkhA~~lG----~~~l~~~~~~Tver~laDAvi~SG~~t------------G~~~~~e~Lk~ak~~~~~~pVl~gs 211 (261)
T TIGR00259 148 ADVVVKHAVHLG----NRDLESIVLDTVERGLADAVILSGKTT------------GTEVDLEELKLAKETVKDTPVLAGS 211 (261)
T ss_pred ECCCHHHCCCCC----CCCHHHHHHHHHHHCCCCEEEEECCCC------------CCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 315245210258----836688986445416988389815457------------8887888899998751796699847
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 77899898887420352344122000
Q gi|254781167|r 196 GLEDMSQALKILPSVDGVMIGRAAYK 221 (322)
Q Consensus 196 di~~~~~a~~~l~~~dgvMigRga~~ 221 (322)
| .+.|.+.+.++-|||+.+|.-.-.
T Consensus 212 G-~~~~N~~~ll~~AdG~ivat~~Kk 236 (261)
T TIGR00259 212 G-VNLENVEELLSIADGVIVATTIKK 236 (261)
T ss_pred C-CCHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 8-798899999987398798356533
No 333
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=87.65 E-value=0.99 Score=25.18 Aligned_cols=152 Identities=10% Similarity=0.111 Sum_probs=78.3
Q ss_pred EEEE--ECCCHHHHHHHHHHH----HCCCCCEEEECCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9998--269989999988753----104537774425641367766688-999985589999999998502790699986
Q gi|254781167|r 51 ALQI--GGADISKLVEAAKIV----EDFGYNEINLNVGCPSARVHEGSF-GACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 51 ~~Ql--~g~~p~~~~~aa~~~----~~~g~~~idlN~GCP~~~v~~~g~-GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.+|| -+.+...+.+.|+.+ .++|.-.| ||= =..-+.+-|+ |--|-++..-+.+..+.+.. +.
T Consensus 43 ~vqlR~k~~d~~~~~~~a~~L~~lc~~~gv~lI-IND--~~dlA~~~gADGVHlGq~d~~~~~aR~~lg~--~~------ 111 (221)
T PRK06512 43 SVILPDYGLDEATFQKQAEKYVPVIQEAGAAAL-IAG--DTRIAGRVKADGLHIEGNAAALAEAIEKHAP--KM------ 111 (221)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEE-ECC--CHHHHHHCCCCEEEECCCCCCHHHHHHHHCC--CC------
T ss_conf 999757999999999999999999998299199-889--7999997099866526875319999998478--86------
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 11345665322014554320001220121001356640257742122766104678766673887530257777899898
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQA 203 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a 203 (322)
=+|.....+ .+.+..+.++|+|.|..-+=+ .++|.. ..+...+.+...++.+ .+|+++-|||+ .+.+
T Consensus 112 IIG~~~~~s----~~~A~~A~e~GADYv~fG~~~-----~~~k~~--a~~~~l~~l~~~~~~~-~iP~VAIGGIt-~~n~ 178 (221)
T PRK06512 112 IVGFGNLRD----RHGAMEVGELQPDYLFFGKLG-----ADNKPE--AHPRNLSLAEWWAEMI-EIPCIVQAGSD-LASI 178 (221)
T ss_pred EEEEECCCC----HHHHHHHHHCCCCEEEECCCC-----CCCCCC--CCCCCHHHHHHHHHCC-CCCEEEECCCC-HHHH
T ss_conf 786405788----999999997399857657878-----888998--8754258999999747-99989982789-9999
Q ss_pred HHHH-HCCCCEEEECCCCCHHHHH
Q ss_conf 8874-2035234412200012439
Q gi|254781167|r 204 LKIL-PSVDGVMIGRAAYKNSAML 226 (322)
Q Consensus 204 ~~~l-~~~dgvMigRga~~~P~if 226 (322)
.+.+ .|+|+|.+.++++..|-.-
T Consensus 179 ~~v~~aGad~vAVisaI~~a~Dp~ 202 (221)
T PRK06512 179 VEVAETGAEFVALGRAVFDAHDPP 202 (221)
T ss_pred HHHHHHCCCEEEEHHHHHCCCCHH
T ss_conf 999981998998859960899999
No 334
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.56 E-value=1.5 Score=23.83 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=75.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE
Q ss_conf 5784699982699899999887531045377744256413677666889999855899999999985027-906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~R 124 (322)
.+.|++.=+-+.+++...+.++.+.+-|+..|++-+--|.. .+.++.+++.. ++-|-
T Consensus 13 ~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a------------------~~~I~~l~~~~p~~~vG---- 70 (212)
T PRK05718 13 RAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA------------------LEAIRAIRKEVPEALIG---- 70 (212)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHH------------------HHHHHHHHHHCCCCEEE----
T ss_conf 76987999974899999999999998799789995789619------------------99999999758981796----
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH---------HHH-----------------HHHHHCCCCCCCCCCCCCH---
Q ss_conf 13456653220145543200012201210---------013-----------------5664025774212276610---
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI---------HAR-----------------KAILKGLSPKDNRKIPNLD--- 175 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti---------H~R-----------------t~~~~g~s~~~~~~~~~~~--- 175 (322)
.|. ....+-++.+.++|++.+.- .++ ++...|.+ --...|++
T Consensus 71 aGT------V~~~e~~~~a~~aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~---~vK~FPA~~~g 141 (212)
T PRK05718 71 AGT------VLNPEQLAQAIEAGAQFIVSPGLTPPLLKACQDGPIPLIPGVNTPSELMLAMELGLR---TFKFFPAEASG 141 (212)
T ss_pred EEE------ECCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCC---EEEECCCCCCC
T ss_conf 533------134889999998499899848998999999998199765786999999999987999---89978761017
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf -46787666738875302577778998988874203523441
Q gi|254781167|r 176 -YDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIG 216 (322)
Q Consensus 176 -~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMig 216 (322)
-.+++.++.-+|+++++..|||. .+.+.+.+....-+-+|
T Consensus 142 G~~~lkal~~p~p~i~~~ptGGV~-~~N~~~yl~~~~v~avg 182 (212)
T PRK05718 142 GVKMLKALAGPFSDVRFCPTGGIS-PANYRDYLALPNVLCIG 182 (212)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHCCCCEEEEE
T ss_conf 999999985658998288659989-87899998178869998
No 335
>PRK04302 triosephosphate isomerase; Provisional
Probab=87.50 E-value=1.2 Score=24.50 Aligned_cols=48 Identities=23% Similarity=0.354 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHH
Q ss_conf 67876667388753025777789989888742-0352344122000124
Q gi|254781167|r 177 DIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 177 ~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~ 224 (322)
+.++.+++..++++|.+-|+|++.+++..+.. ++||+.||-+.+.-.-
T Consensus 162 ~~~~~~~~~~~~i~ILYGGsV~~~n~~~~~~~~~vDG~LVGgAsLkA~D 210 (223)
T PRK04302 162 GTVEAVRKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKD 210 (223)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEECCC
T ss_conf 9999999647997589978468788999974689985897625666879
No 336
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.33 E-value=1.2 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 78469998269989999988753104537774425641
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCP 84 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP 84 (322)
..|++.=+-+.++++....++.+.+.|+..|++-+--|
T Consensus 3 ~~~iiaVlr~~~~~~a~~~~~al~~~Gi~~iEitl~t~ 40 (190)
T cd00452 3 AQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTP 40 (190)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 69779999779999999999999986998899967880
No 337
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=87.31 E-value=1.7 Score=23.55 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=65.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--
Q ss_conf 998269989999988753104537774425641367766688999985589999999998502790699986113456--
Q gi|254781167|r 52 LQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDD-- 129 (322)
Q Consensus 52 ~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~-- 129 (322)
+.|.+.+.+++...++.+.+ |+|.|.+-+-+=.. .+++.+.+.++.+++..++|+=+-+|.-++.
T Consensus 2 v~i~~~~~~~~~~~~~~~~~-~aD~vE~R~D~l~~------------~~~~~i~~~l~~l~~~~~~PiI~T~R~~~eGG~ 68 (222)
T pfam01487 2 VPVTGPSLEEALAELEELKE-GADAVELRVDLLEN------------VDAEDVSEQLSALRESTGLPIIFTVRTKSEGGR 68 (222)
T ss_pred CCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCC------------CCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC
T ss_conf 56057999999999998610-89989998603568------------787899999999998389977999687788899
Q ss_pred -CCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -653220145543200012201210013
Q gi|254781167|r 130 -QIPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 130 -~~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
..+.+...++.+.+.+.|+++|.|--.
T Consensus 69 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~ 96 (222)
T pfam01487 69 FEGSEEEYLELLKEALRLGPDYIDIELS 96 (222)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8899999999999999758988999777
No 338
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=87.31 E-value=2.4 Score=22.33 Aligned_cols=165 Identities=16% Similarity=0.250 Sum_probs=87.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHHHH-HHH-------------------------
Q ss_conf 78469998269989999988753104-537774425641367766688999-985-------------------------
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDF-GYNEINLNVGCPSARVHEGSFGAC-LML------------------------- 99 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~-g~~~idlN~GCP~~~v~~~g~Gaa-Ll~------------------------- 99 (322)
..|=-+|+.=.-|+ +.+..+++.+. .-|+|=|-.|-|- +.+-|..+- -++
T Consensus 170 ~~ppylqva~d~~~-~~~~~~~~~~~p~~d~~IIEaGTPL--IK~~G~~aV~~iRe~fPd~~IvADlKTmDaG~lEa~mA 246 (392)
T PRK13307 170 WDPPYLQVALDLPD-LEEVERVLSELPQSDHIIIEAGTPL--IKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMA 246 (392)
T ss_pred CCCCEEEEEECCCC-HHHHHHHHHHCCCCCEEEEEECCHH--HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 58871478755888-8999999971886562899908588--89867899999998789988998542035426888888
Q ss_pred --------------HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf --------------589999999998502790699986113456653220145543200012201210013566402577
Q gi|254781167|r 100 --------------NPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSP 165 (322)
Q Consensus 100 --------------~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~ 165 (322)
+.+-+.+++++.++ .++-+-+-+ + +..+..+.++.+ +.|++.+.+|--.-
T Consensus 247 a~AGADivtVlG~A~~sTI~~aikeA~k-~G~~v~vDl-I------nV~dpv~ra~eL-klg~DiI~lH~giD------- 310 (392)
T PRK13307 247 ADATADAVVISGLAPISTIEKAIHEAQK-TGIYSILDM-L------NVEDPVKLLESL-KVKPDVVELHRGID------- 310 (392)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHH-CCCEEEEEE-C------CCCCHHHHHHHH-CCCCCEEEEEECCC-------
T ss_conf 8759988999567987899999999997-097999983-4------788889999984-44698899985412-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 421227661046787666738875302577778998988874-203523441220001243999999871
Q gi|254781167|r 166 KDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 166 ~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
+|+ .+ -.|..+.++++.....++-.-|||+ .+.+.... .|+|=|.+||++.+..-.-.-.++++.
T Consensus 311 -~Q~-~~-~~~~~l~~i~~~~~~~~VAVAGGI~-~et~~~~~~~gadIvIVG~aIT~S~Dp~~AAreil~ 376 (392)
T PRK13307 311 -EEG-TE-HAWGNIPEIKKAAGKILVAVAGGVR-VEKVEEALKAGADILVVGRAITKSKDVRRAAEQFLN 376 (392)
T ss_pred -HHH-CC-CCHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHH
T ss_conf -640-36-8745699999742680599977888-888999984699899989121378998999999998
No 339
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=87.16 E-value=1.2 Score=24.57 Aligned_cols=80 Identities=28% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EEEEE---------C
Q ss_conf 998999998875310453777-442564136776668899998558999999999850279069-99861---------1
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEI-NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV-TVKCR---------I 125 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~i-dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv-svK~R---------l 125 (322)
+|++.=.+-++.+..+|.|.| ||-.|=. +.++-+++.+.+++|| ||-+= -
T Consensus 75 ~d~~~E~eK~~~A~~~GADtiMDLStGGd-------------------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~ 135 (433)
T PRK13352 75 SDIEEELEKAKVAVKYGADTIMDLSTGGD-------------------LDEIRRAIIEASPVPVGTVPIYQAAIEAARKY 135 (433)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCC-------------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 98899999999999829985786577746-------------------69999999964998867801999999998805
Q ss_pred C-CCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 3-456653220145543200012201210013
Q gi|254781167|r 126 G-VDDQIPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 126 G-~~~~~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
| .. +-+.+.+++.++.=.+.|+|.+|||+=
T Consensus 136 ~~~~-~mt~d~~f~~ie~qa~~GVDfmTiH~G 166 (433)
T PRK13352 136 GSIV-DMTEDDLFDVIEKQAKDGVDFMTIHCG 166 (433)
T ss_pred CCHH-HCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 9955-599999999999999718987996202
No 340
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=87.11 E-value=2.3 Score=22.43 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99998558999999999850279069998611345665322014554320001220121001356640257742122766
Q gi|254781167|r 94 GACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPN 173 (322)
Q Consensus 94 GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~ 173 (322)
||.|+++.++ ++++.+ ++.||-+|=--. -+.+.+...++.+.++|...|.+--|= .+-. +..-.
T Consensus 107 gAfl~rqtdL----l~a~a~-t~kpV~lKkgqf----~sp~~~~~a~eki~~~Gn~~v~lcERG-----~~fg--Y~~lv 170 (264)
T PRK05198 107 PAFLCRQTDL----LVAAAK-TGKVVNIKKGQF----LAPWDMKNVVDKVRETGNDKIILCERG-----TSFG--YNNLV 170 (264)
T ss_pred CHHHHCCHHH----HHHHHH-CCCEEEECCCCC----CCHHHHHHHHHHHHHCCCCEEEEEECC-----CCCC--CCCCC
T ss_conf 2354034799----999986-499088425565----899999999999997499849998489-----9868--88763
Q ss_pred CHHHHHHHHHHHCCCCCCCC-----------CCC----CCCHHH--HHHH-HHCCCCEEEECCCCCHHH
Q ss_conf 10467876667388753025-----------777----789989--8887-420352344122000124
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGL-----------NGG----LEDMSQ--ALKI-LPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~-----------NGd----i~~~~~--a~~~-l~~~dgvMigRga~~~P~ 224 (322)
.|...|..+|+. ..||+. +|+ -++.-. +..- ..|+||+||= ..-||-
T Consensus 171 vD~~~i~~lk~~--~~PVi~DpSHs~q~p~~~~~~sgG~r~~v~~la~aaia~G~dGl~iE--~HpdP~ 235 (264)
T PRK05198 171 VDMRGLPIMRET--GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIE--THPDPD 235 (264)
T ss_pred HHHHHHHHHHHC--CCCCEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--ECCCCC
T ss_conf 126778999852--89826657320016788778765517779999999998299989998--368802
No 341
>PRK08904 consensus
Probab=86.84 E-value=1.1 Score=25.00 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEE
Q ss_conf 578469998269989999988753104537774425641367766688999985589999999998502-7906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKA-LSIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~-~~~pvsvK~R 124 (322)
.+.|++.=+-+.|+++....++.+.+-|+..|++-+--|. +.+.++.+++. .++-|-+=+
T Consensus 8 ~~~~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~------------------a~~~i~~l~~~~p~~~vGaGT- 68 (207)
T PRK08904 8 TAGAVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLRTPV------------------GLDAIRLIAKEVPNAIVGAGT- 68 (207)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH------------------HHHHHHHHHHHCCCCEEEEEE-
T ss_conf 8699799997699999999999999879988999579913------------------999999999868987685531-
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH---------HHH-----------------HHHHHCCCCCCCCCCCCCH---
Q ss_conf 13456653220145543200012201210---------013-----------------5664025774212276610---
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI---------HAR-----------------KAILKGLSPKDNRKIPNLD--- 175 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti---------H~R-----------------t~~~~g~s~~~~~~~~~~~--- 175 (322)
....+-++.+.++|++.+.- .++ ++...|.+ --...|++
T Consensus 69 ---------Vl~~e~~~~a~~aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~---~vK~FPA~~~G 136 (207)
T PRK08904 69 ---------VTNPEQLKAVEDAGAVFAISPGLHESLAKAGHNSGIPLIPGVATPGEIQLALEHGID---TLKLFPAEVVG 136 (207)
T ss_pred ---------CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCC---EEEECCCHHCC
T ss_conf ---------368999999998499999848998999999998399765786999999999987999---89977622208
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf -4678766673887530257777899898887420
Q gi|254781167|r 176 -YDIVYEIKKENPDLFIGLNGGLEDMSQALKILPS 209 (322)
Q Consensus 176 -~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~ 209 (322)
-.+++.++.-+|+++++..|||+ .+++.+.+..
T Consensus 137 G~~~lkal~~pfp~i~~~pTGGV~-~~N~~~yl~~ 170 (207)
T PRK08904 137 GKAMLKALYGPYADVRFCPTGGIS-LATAPEYLAL 170 (207)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHHC
T ss_conf 899999874659998088658989-8789999818
No 342
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=86.68 E-value=1.7 Score=23.50 Aligned_cols=165 Identities=22% Similarity=0.265 Sum_probs=94.6
Q ss_pred HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02745784699982699899999887531045377744256413677666-----8899998558999999999850279
Q gi|254781167|r 42 GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEG-----SFGACLMLNPDIVGDCIAAMCKALS 116 (322)
Q Consensus 42 ~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~-----g~GaaLl~~p~~~~~iv~~~~~~~~ 116 (322)
-|.|--+|+..|=+|-+-=.+.+.|+- ++|--.|-==|.--.-.++.. --||-=|+|-+|+ +++-+ .+
T Consensus 60 AfKPRTSPYsFQGlg~~gl~~l~~A~~--~~GL~~vTEvmd~~d~e~~~~y~D~lQiGARNmQNF~LL----~~vG~-~~ 132 (262)
T TIGR01361 60 AFKPRTSPYSFQGLGEEGLKLLRRAAD--ETGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELL----KEVGK-QG 132 (262)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHH----HHHHH-CC
T ss_conf 348888884124741899999999998--609948988636256777876511342225412256999----99722-37
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC--
Q ss_conf 0699986113456653220145543200012-2012100135664025774212276610467876667388753025--
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSG-VNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL-- 193 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g-~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~-- 193 (322)
.||-.|==+| -+.++|+.-|+=+...| ...|.+==| |.-+-+....-.+|...|.-+|+. +++||+.
T Consensus 133 KPVLLKRG~~----aTi~EwL~AAEYIl~~GsN~~ViLCER-----GIRTfE~~TR~TLD~saV~~~K~~-tHLPi~VDP 202 (262)
T TIGR01361 133 KPVLLKRGMG----ATIEEWLEAAEYILSEGSNGNVILCER-----GIRTFEKSTRNTLDLSAVPLLKKE-THLPIIVDP 202 (262)
T ss_pred CCEEEECCCC----HHHHHHHHHHHHHHHCCCCCCEEEEEC-----CCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEECC
T ss_conf 9755307721----589999999999984688995489975-----856763002453337899999860-589878718
Q ss_pred --CCCCCCHHHHHHH--H-HCCCCEEEECCCCCHHHH
Q ss_conf --7777899898887--4-203523441220001243
Q gi|254781167|r 194 --NGGLEDMSQALKI--L-PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 194 --NGdi~~~~~a~~~--l-~~~dgvMigRga~~~P~i 225 (322)
-.|-+|.=..+.. + -|+||+|| -..-||--
T Consensus 203 SH~~GrRdLV~plA~AA~A~GADgl~i--EVHp~Pe~ 237 (262)
T TIGR01361 203 SHAAGRRDLVLPLAKAAIAAGADGLMI--EVHPDPEK 237 (262)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEE--EECCCHHH
T ss_conf 798762457889999989757473689--86678333
No 343
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=86.56 E-value=1.1 Score=24.81 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEE
Q ss_conf 5784699982699899999887531045377744256413677666889999855899999999985027-906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~R 124 (322)
.+.|++.=+-+.++++..+.++.+.+-|+..|.+-+--|. ..+.++.+++.. ++-|-+
T Consensus 6 ~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t~~------------------a~~~I~~l~~~~p~~~iGa--- 64 (196)
T pfam01081 6 REAKIVPVIVIKDKEDALPLAEALAAGGIRVLEVTLRTPC------------------ALDAIRLLRKNRPDALVGA--- 64 (196)
T ss_pred HHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHH------------------HHHHHHHHHHHCCCCEEEE---
T ss_conf 6699799997799999999999999879988999479827------------------9999999996499967999---
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH---------HHH-----------------HHHHHCCCCCCCCCCCCCH---
Q ss_conf 13456653220145543200012201210---------013-----------------5664025774212276610---
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI---------HAR-----------------KAILKGLSPKDNRKIPNLD--- 175 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti---------H~R-----------------t~~~~g~s~~~~~~~~~~~--- 175 (322)
| .....+-++.+.++|++.+.= +++ ++...|.+- -...|+.
T Consensus 65 -G------TV~~~e~~~~a~~aGA~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~---vKlFPA~~~G 134 (196)
T pfam01081 65 -G------TVLNAQQLAEAAEAGAQFVVSPGLTADLLKHAVDVKIPLIPGVSTPSEIMLGLDLGLTR---FKFFPAEASG 134 (196)
T ss_pred -E------ECCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCE---EEECCCHHCC
T ss_conf -8------37689999999974999999787639999999973996637859999999999879998---9978731018
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHHHH
Q ss_conf -467876667388753025777789989888742-03523441220001243
Q gi|254781167|r 176 -YDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 176 -~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P~i 225 (322)
..+++.++.-+|+++++..|||.. +++.+.+. |+..+-+|.....+-++
T Consensus 135 g~~~lkal~~p~p~~~f~ptGGv~~-~N~~~yl~~g~v~~~~GS~l~~~~li 185 (196)
T pfam01081 135 GVPAIKALAGPFPQVRFCPTGGIHP-ANVRDYLALPNILCVGGSWLVPASLI 185 (196)
T ss_pred CHHHHHHHHCCCCCCEEEEECCCCH-HHHHHHHHCCCEEEEECHHHCCHHHH
T ss_conf 4999999857799986998079898-88999996898699989364898898
No 344
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=86.51 E-value=2.7 Score=22.03 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=99.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 6999826998999998875310453777442564136776668899998558-------999999999850279069998
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP-------DIVGDCIAAMCKALSIPVTVK 122 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p-------~~~~~iv~~~~~~~~~pvsvK 122 (322)
+++.--++||+.++++++.+.+. . ..-+=++|-.|.|.+.+...+==++| +-..+|.+...+ .++||.|+
T Consensus 72 iav~~~s~dp~~fa~~vk~V~~~-~-~~pliL~~~dp~vl~aale~~~~~rPLlyaAt~~N~~~m~~lA~~-~~~Pv~v~ 148 (384)
T pfam03599 72 IAIRLISTDPKEFAKAVEKVLQA-V-DVPLVIGGSDPEVLKAALEVAEDERPLLYAATLDNYKEIAELALE-YKHPVLLW 148 (384)
T ss_pred EEEEECCCCHHHHHHHHHHHHHH-C-CCCEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 99990789999999999999964-6-998899808999999999974658977854899899999999997-49828997
Q ss_pred EECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH--HHHHCC-CCCCCCCCCCCC
Q ss_conf 61134566532201455432000122012100135664025774212276610467876--667388-753025777789
Q gi|254781167|r 123 CRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYE--IKKENP-DLFIGLNGGLED 199 (322)
Q Consensus 123 ~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~--l~~~~~-~~~i~~NGdi~~ 199 (322)
--- +.+.+.++++.+.++|++-|.+.+-|.... .+-++.. .+.-.|++ +|..-+ .-|++ ++-..+
T Consensus 149 a~~------dl~~l~~L~~~l~~~GikdlVLDPgT~~~g-~~l~~t~----~n~~~IRRaAlkgdr~lgyPi~-~~~~~a 216 (384)
T pfam03599 149 SIN------DLNELKNLNRKLLKAGVKDIVLDPTTEALG-YGIKDTI----DNFVRIRRAAIKGDKDLGFPIS-SGTTNA 216 (384)
T ss_pred CCC------CHHHHHHHHHHHHHCCCCCEEECCCCCCCC-CCHHHHH----HHHHHHHHHHHCCCCCCCCCEE-ECCCCC
T ss_conf 488------899999999999976985489889886667-4689999----9999999998657977888555-145666
Q ss_pred H--HHH--HHHHHCCCCEEEECCCCCHHHH-H--HHHHHHHCCCCCC
Q ss_conf 9--898--8874203523441220001243-9--9999987199888
Q gi|254781167|r 200 M--SQA--LKILPSVDGVMIGRAAYKNSAM-L--TTVDEYFSNPLTG 239 (322)
Q Consensus 200 ~--~~a--~~~l~~~dgvMigRga~~~P~i-f--~~I~~~l~~~~~~ 239 (322)
+ +.+ .....+-.++||=... .||- + -..++.+++....
T Consensus 217 ~~~~~~~~~~~~~kYa~i~vl~~~--~~~~~lPll~lR~niYTDPqk 261 (384)
T pfam03599 217 WGARESWMVNLMNRYADILILRGD--DIWELMPVLTLRQNIYTDPRK 261 (384)
T ss_pred CHHHHHHHHHHHHHHCCEEEECCC--CHHHHHHHHHHHHHCCCCCCC
T ss_conf 403688999999875768997379--888860589998760489999
No 345
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=86.48 E-value=2.7 Score=22.02 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=52.6
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCCC
Q ss_conf 82699899999887531045377744--2564136776668899998558999999999850279--0699986113456
Q gi|254781167|r 54 IGGADISKLVEAAKIVEDFGYNEINL--NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS--IPVTVKCRIGVDD 129 (322)
Q Consensus 54 l~g~~p~~~~~aa~~~~~~g~~~idl--N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~ 129 (322)
.+..+|+.+.+.++.+.+.|++.|+| ..|| ..|..++++++.+++.+. .|+++-+-
T Consensus 140 ~~rt~~e~l~~~~~~~~~~ga~~i~l~DTvG~---------------~~P~~~~~~i~~l~~~v~~~~~i~~H~H----- 199 (409)
T COG0119 140 ATRTDPEFLAEVVKAAIEAGADRINLPDTVGV---------------ATPNEVADIIEALKANVPNKVILSVHCH----- 199 (409)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC---------------CCHHHHHHHHHHHHHHCCCCCEEEEEEC-----
T ss_conf 33679999999999999719949997787686---------------5879999999999983788873889836-----
Q ss_pred CCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 6532201455432000122012
Q gi|254781167|r 130 QIPAVALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~i 151 (322)
.+.-....-.-...++|++.+
T Consensus 200 -ND~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 200 -NDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred -CCCCHHHHHHHHHHHCCCCEE
T ss_conf -985659999999998488389
No 346
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=86.45 E-value=2.7 Score=22.00 Aligned_cols=190 Identities=17% Similarity=0.161 Sum_probs=103.0
Q ss_pred HHHHHHHHH---CCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCE
Q ss_conf 899999982---89829981----70332477608978983----02745784699982699899999887531045377
Q gi|254781167|r 8 HYRFFARLL---TNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNE 76 (322)
Q Consensus 8 ~fR~l~r~~---~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~ 76 (322)
.||.+++.+ |.++++.. |+.+ |....+++++ +..+..-|+++++. ++..+-.+-++..++.|+|.
T Consensus 27 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~---Ls~eEr~~l~~~~~~~~~g~~~vi~gvg-~~t~~ai~la~~a~~~Gad~ 102 (296)
T TIGR03249 27 AYRENIEWLLGYGLEALFAAGGTGEFFS---LTPAEYEQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHH---CCHHHHHHHHHHHHHHCCCCCEEECCCC-HHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999779998997830516665---8999999999999998389841512786-12999999999998759997
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 74425641367766688999985589999999998502790699986113456653220145543200012201210013
Q gi|254781167|r 77 INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 77 idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
|= +-+|. - ...+++-+.+-.+.+.+++++||-+==|-|.+ ...+++..+.+.--..+.|
T Consensus 103 v~--v~pPy--y--------~~~~~~~l~~~f~~ia~a~~~pi~lYn~~~~~------~~~~~l~~L~~~~p~i~gi--- 161 (296)
T TIGR03249 103 YL--LLPPY--L--------INGEQEGLYAHVEAVCESTDLGVIVYQRDNAV------LNADTLERLADRCPNLVGF--- 161 (296)
T ss_pred EE--ECCCC--C--------CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC------CCHHHHHHHHHCCCCEEEE---
T ss_conf 89--77998--8--------99999999999999997159977873077878------7999999998157987999---
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 5664025774212276610467876667388753025777789989-88874-203523441220001243999999871
Q gi|254781167|r 157 KAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ-ALKIL-PSVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 157 t~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~-a~~~l-~~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
|+ .. .|...+.++.+..++-..+.+| ..+.+. +...+ -|++|.+.|=+.+ -|-++.++-+.+.
T Consensus 162 ---------K~--s~--~d~~~~~~~~~~~~~~~~~~~g-~~~~d~~~~~~~~~G~~g~i~~~~n~-~P~~~~~l~~a~~ 226 (296)
T TIGR03249 162 ---------KD--GI--GDMEQMIEITQRLGDRLGYLGG-MPTAEVTAPAYLPLGVTSYSSAIFNF-IPHIARAFYEALR 226 (296)
T ss_pred ---------EE--CC--CCHHHHHHHHHHCCCCCEEEEC-CCCHHHHHHHHHHCCCCEEEEHHHHH-HHHHHHHHHHHHH
T ss_conf ---------97--76--6899999999973997279738-97128999999938998996246567-5999999999998
Q ss_pred CCC
Q ss_conf 998
Q gi|254781167|r 235 NPL 237 (322)
Q Consensus 235 ~~~ 237 (322)
.+.
T Consensus 227 ~gd 229 (296)
T TIGR03249 227 RGD 229 (296)
T ss_pred CCC
T ss_conf 777
No 347
>pfam00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
Probab=86.12 E-value=2.8 Score=21.89 Aligned_cols=172 Identities=14% Similarity=0.171 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHCCCEEEECCCCC----CHHHHCCCHHHHHHCCCCCCCEEEEEECC-CHHHHHHHHHHHHCCCCCEE
Q ss_conf 78607899999982898299817033----24776089789830274578469998269-98999998875310453777
Q gi|254781167|r 3 DWTDRHYRFFARLLTNNALLYTEMIV----ADAILRGDKKNILGFSTQEKPLALQIGGA-DISKLVEAAKIVEDFGYNEI 77 (322)
Q Consensus 3 g~Td~~fR~l~r~~~~~~~~~TEmi~----a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~-~p~~~~~aa~~~~~~g~~~i 77 (322)
|.|+.--=+.|..+|++.+ -||. -+-+.....+.+.+..+ |..+=+|-+ +++++ .+++...+.|.|
T Consensus 5 Git~~ed~~~~~~~gad~i---Gfif~~~SpR~i~~~~a~~i~~~~~---~~~VgVfv~~~~~~i---~~~~~~~~~d~v 75 (195)
T pfam00697 5 GLTRIEDVVAAVPAGADYL---GLIFAPSSKRQVFPEQAQELRSAVP---LLLVGVFVNQPIEEV---LRIAQVLGLDVV 75 (195)
T ss_pred CCCCHHHHHHHHHCCCCEE---EEECCCCCCCCCCHHHHHHHHHHCC---CCEEEEECCCCHHHH---HHHHHHCCCCEE
T ss_conf 8897999999995899999---8835799998879999999997589---865999847868999---999983799879
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 44256413677666889999855899999999985027906999861134566532201455432000122012100135
Q gi|254781167|r 78 NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK 157 (322)
Q Consensus 78 dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt 157 (322)
-|.=- .+++. ...++. ..|+...+++.- .. ...+..... ..++.+-+-.+.
T Consensus 76 QlHG~----------------e~~~~----~~~~~~--~~~~ikai~~~~--~~---~~~~~~~~~--~~~d~~L~Ds~~ 126 (195)
T pfam00697 76 QLHGD----------------EPQEY----ANLLPT--GVPVIKAFHVPA--SV---DDADLARRA--DHVDLPLLDSGQ 126 (195)
T ss_pred EECCC----------------CCHHH----HHHHHH--CCCCEEEEEECC--CC---CHHHHHHHC--CCCCEEEECCCC
T ss_conf 98899----------------99899----999984--688338999478--60---658898733--031255112678
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHH
Q ss_conf 66402577421227661046787666738875302577778998988874--203523441220001243
Q gi|254781167|r 158 AILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 158 ~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~i 225 (322)
|-+++ ..||+.+..+.+. ..|++.-|||+ ++...+.+ .+..||=+..|.-.+|-+
T Consensus 127 ----GGtG~------~fdw~~~~~~~~~--~~~~~LAGGL~-~~NV~~ai~~~~p~gVDvsSGVE~~pG~ 183 (195)
T pfam00697 127 ----GGTGK------LFDWSLISKLLLS--GLPVILAGGLT-PENVSEAIQTLGPAGVDVSSGVETNPGV 183 (195)
T ss_pred ----CCCCC------CCCHHHHHHHHHC--CCCEEEECCCC-HHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf ----98877------5489998655521--68789946889-8999999985299899940701688997
No 348
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=86.01 E-value=1.9 Score=23.18 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHH-CC-CCCCCEEEEEECCCHHHHHHHHHHH--HC-CCCCEEEE
Q ss_conf 60789999998289829981703324776089789830-27-4578469998269989999988753--10-45377744
Q gi|254781167|r 5 TDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILG-FS-TQEKPLALQIGGADISKLVEAAKIV--ED-FGYNEINL 79 (322)
Q Consensus 5 Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~-~~-~~e~p~~~Ql~g~~p~~~~~aa~~~--~~-~g~~~idl 79 (322)
+|.-.+.+|+ -|-|+.+..= +.+....+...+++ .. ..+-|++ ||-||++...+-+-.+ -. .+-+.++.
T Consensus 16 ~~eI~~a~~~-~GTDail~GG---s~gVt~~~~~~~~~~~~e~~~~P~i--lfPsn~~~~s~~~Da~f~~svlNS~~~~w 89 (242)
T TIGR01768 16 ADEIAKAAAE-SGTDAILVGG---SQGVTLDKLDQLIEALRERYGVPII--LFPSNLTNVSRKADALFFPSVLNSDDPYW 89 (242)
T ss_pred HHHHHHHHHH-CCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCCEE--EECCCCCCHHHCCCEEEEEEEEECCCCCE
T ss_conf 6899999983-5898898227---7870368899999999740598379--84188742111067687711431699764
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CE--EEEEEEECC-CCCCCCCCCHHHHHHHHCC-CCCCH
Q ss_conf 256413677666889999855899999999985027-----90--699986113-4566532201455432000-12201
Q gi|254781167|r 80 NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-----SI--PVTVKCRIG-VDDQIPAVALRNLVKSIKK-SGVNG 150 (322)
Q Consensus 80 N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-----~~--pvsvK~RlG-~~~~~~~~~~~~~~~~~~~-~g~~~ 150 (322)
=.|--+.+|.-+--|+...+..---.+++ -..+ +- -.=-|.|.= +| ...+..+..+.++ .|...
T Consensus 90 I~GkhaqWvr~q~~~~~~~~~~~~~~E~~---~~gY~iv~pgg~aa~v~~A~~~P~~----k~~~Aa~~~~a~~~~g~~~ 162 (242)
T TIGR01768 90 IIGKHAQWVRAQILAAPKFKKLGESLEII---PEGYIIVNPGGAAATVTKAKPIPYD----KEDLAAYAALAEEMLGMPI 162 (242)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHEEH---HEEEEEECCCCCEEEEECCCCCCCC----CHHHHHHHHHHHHHHCCCE
T ss_conf 53425999999998789887653134001---2112787589955885023578877----6879999999999809968
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCCHH
Q ss_conf 21001356640257742122766104678766673887------53025777789989888742-035234412200012
Q gi|254781167|r 151 IWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD------LFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYKNS 223 (322)
Q Consensus 151 itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~------~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~~P 223 (322)
+++=+= |+. --.+|| |.|..+|+-... .+++.=|||+|.|+|.++++ ++|=|-+|-=++.+|
T Consensus 163 ~YLEag-------sga-p~pvpP---E~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGnvie~~~ 231 (242)
T TIGR01768 163 IYLEAG-------SGA-PEPVPP---ELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGNVIEEDD 231 (242)
T ss_pred EEEECC-------CCC-CCCCCH---HHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEECCH
T ss_conf 999637-------875-479745---899999987410478863257840764788999999534598999846875163
Q ss_pred HHHHH
Q ss_conf 43999
Q gi|254781167|r 224 AMLTT 228 (322)
Q Consensus 224 ~if~~ 228 (322)
-+...
T Consensus 232 nv~~k 236 (242)
T TIGR01768 232 NVVDK 236 (242)
T ss_pred HHHHH
T ss_conf 78999
No 349
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.89 E-value=0.93 Score=25.40 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH
Q ss_conf 6787666738875302577778998988874-203523441220001243
Q gi|254781167|r 177 DIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 177 ~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~i 225 (322)
+.+..+++..|.+.+-+.|+|+ .+.+.++. +|+|.+.+|--..+.||+
T Consensus 229 ~~v~~l~~~~~~v~iEaSGgIn-~~ni~~yA~tGVD~Is~galt~~~~~~ 277 (285)
T PRK07428 229 QAVQLIRQQNPRVKIEASGNIT-LETIRAVAETGVDYISTSAPITRSPWL 277 (285)
T ss_pred HHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHHCCCCCC
T ss_conf 9999987308988999989999-999999997499999838310699752
No 350
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=85.82 E-value=1.2 Score=24.66 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECCCCCHHHHHHH
Q ss_conf 8753025777789989888742--03523441220001243999
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKILP--SVDGVMIGRAAYKNSAMLTT 228 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRga~~~P~if~~ 228 (322)
++++|.+=|.|.. +++.+.++ ++||++|||+.+. |--|.+
T Consensus 198 ~~v~iLYGGSV~~-~N~~~i~~~~~vdG~LvG~ASl~-~~~F~~ 239 (242)
T cd00311 198 EKVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK-AESFLD 239 (242)
T ss_pred CCCCEEECCCCCH-HHHHHHHCCCCCCEEEECHHHCC-HHHHHH
T ss_conf 6754896077898-89999956899997885357678-889999
No 351
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=85.78 E-value=2.9 Score=21.77 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=68.2
Q ss_pred CEEEEEECCC-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE---EEEEE
Q ss_conf 4699982699-8999998875310453777442564136776668899998558999999999850279069---99861
Q gi|254781167|r 49 PLALQIGGAD-ISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV---TVKCR 124 (322)
Q Consensus 49 p~~~Ql~g~~-p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv---svK~R 124 (322)
|+.+-+==.| |.....+++.+.+.|++.+-++.-++. +-+...+++..+. +..| +.=.-
T Consensus 55 ~If~DlK~~DIpnTv~~~~~~~~~~ga~~vTvh~~~g~----------------~~i~~a~~~~~~~-~~~v~~v~~ls~ 117 (215)
T PRK13813 55 PVIADLKVADIPNTNRLICEKVFEAGADGIIVHGFTGR----------------DSLKAVVEAAKRY-GKKVFVVVEMSH 117 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCH----------------HHHHHHHHHHHHC-CCCEEEEEEECC
T ss_conf 90799862446379999999999629999999256889----------------9999999987641-984599998468
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CH
Q ss_conf 13456653220145543200012201210013566402577421227661046787666738875302577778----99
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE----DM 200 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~----~~ 200 (322)
.|..+. ......++++...++|++.+... .+ ..+.+..+++.++.-..+...+|. ++
T Consensus 118 ~g~~~~-~~~~~~~~~~~a~~~g~~Gvv~~-~~-----------------~~~~~~~ir~~~~~~~~ivtPGI~~~~~~~ 178 (215)
T PRK13813 118 PGALEF-INPVADKLAKLANEAGAFGVVAP-AT-----------------RPERVRAIRRRLGDDLKIISPGIGAQGGKA 178 (215)
T ss_pred CCHHHH-HHHHHHHHHHHHHHCCCCEEEEC-CC-----------------CHHHHHHHHHHCCCCCEEECCCCCCCCCCH
T ss_conf 774656-99999999999998699989978-98-----------------879999999862887469857616799998
Q ss_pred HHHHHHHHCCCCEEEECCCCC--HHH
Q ss_conf 898887420352344122000--124
Q gi|254781167|r 201 SQALKILPSVDGVMIGRAAYK--NSA 224 (322)
Q Consensus 201 ~~a~~~l~~~dgvMigRga~~--~P~ 224 (322)
.+|.+ .|+|-+.|||+++. ||-
T Consensus 179 ~~ai~--~Gad~iVVGR~It~A~dP~ 202 (215)
T PRK13813 179 SDAIK--AGADYVIVGRSIYNAADPR 202 (215)
T ss_pred HHHHH--HCCCEEEECCCCCCCCCHH
T ss_conf 99998--1899999894335899999
No 352
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=85.70 E-value=2.9 Score=21.75 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=53.2
Q ss_pred HHHHCCCCCCHH-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 432000122012-----100135664025774212276610467876667388753025777789989888742035234
Q gi|254781167|r 140 VKSIKKSGVNGI-----WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVM 214 (322)
Q Consensus 140 ~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvM 214 (322)
.+-+++.|+|.| |+||-. ++.+ +.. ...++.+.+.++.+.+|++|++.-|+=..+++....+....|=+
T Consensus 179 ~~Fv~~TgvD~LAvaiGt~HG~Y---K~~~-~p~--~~~l~~~~L~~i~~~~~~~pLVLHGgS~vp~~~~~~~~~~GG~~ 252 (347)
T PRK13399 179 VDFVQRTGVDALAIAIGTSHGAY---KFTR-KPD--GDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGDM 252 (347)
T ss_pred HHHHHHHCCCEEEEEECCCCCCC---CCCC-CCC--CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 99999868985864405344787---7888-998--55237999999997378987687479788478889999707766
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 412200012439999998719988
Q gi|254781167|r 215 IGRAAYKNSAMLTTVDEYFSNPLT 238 (322)
Q Consensus 215 igRga~~~P~if~~I~~~l~~~~~ 238 (322)
+.++|-| ..||+..+..+-.
T Consensus 253 --~~~~G~~--~e~i~~AI~~GV~ 272 (347)
T PRK13399 253 --KETYGVP--VEEIQRGIKHGVR 272 (347)
T ss_pred --CCCCCCC--HHHHHHHHHCCCE
T ss_conf --6788999--9999999981977
No 353
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=85.56 E-value=2.4 Score=22.30 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=63.1
Q ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCCCCCCHHHHHHHHCC
Q ss_conf 753104537774425641367766688999985589999999998502790699986113-4566532201455432000
Q gi|254781167|r 67 KIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG-VDDQIPAVALRNLVKSIKK 145 (322)
Q Consensus 67 ~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG-~~~~~~~~~~~~~~~~~~~ 145 (322)
+.+.+-|+|+||+- =| ..+--| ...|..+.+|+..+.. ..|||+-+ | +.. +......-+.....
T Consensus 14 ~~a~~~GaDIIDvK--nP----~~GaLG---a~~p~vi~~i~~~v~~--~k~vSati--GD~p~--~p~~is~aa~~~a~ 78 (235)
T pfam04476 14 LEAIEGGADIIDVK--NP----AEGSLG---ANFPWVIREIRELTPK--DKLVSATV--GDVPY--KPGTVSLAALGAAV 78 (235)
T ss_pred HHHHHCCCCEEEEC--CC----CCCCCC---CCCHHHHHHHHHHHCC--CCEEEEEE--ECCCC--CCCHHHHHHHHHHC
T ss_conf 99986799989827--98----888888---9999999999998567--87168984--07889--95167899987550
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHH----HHHHHHHCCCCCCCCCC--CC-----CCHHHHHHH--HHCCCC
Q ss_conf 122012100135664025774212276610467----87666738875302577--77-----899898887--420352
Q gi|254781167|r 146 SGVNGIWIHARKAILKGLSPKDNRKIPNLDYDI----VYEIKKENPDLFIGLNG--GL-----EDMSQALKI--LPSVDG 212 (322)
Q Consensus 146 ~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~----i~~l~~~~~~~~i~~NG--di-----~~~~~a~~~--l~~~dg 212 (322)
+|++.|-| |+.+..+.. ..++. +..++...+...+++.+ |- -++.+..+. ..|++|
T Consensus 79 ~GvDyVKV--------Gl~~~~~~~---~~~e~~~~~~~av~~~~~~~~vVav~~AD~~~~~~~~p~~i~~~a~~~G~~g 147 (235)
T pfam04476 79 SGADYIKV--------GLYGVKNYD---EAVEVMKNVVRAVKDFDSSKIVVAAGYADAYRIGAVEPLDVPEIAADAGADI 147 (235)
T ss_pred CCCCEEEE--------ECCCCCCHH---HHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 38998999--------437888679---9999999999998722788669999601033313888356799999759978
Q ss_pred EEEECCCCCHHHHH
Q ss_conf 34412200012439
Q gi|254781167|r 213 VMIGRAAYKNSAML 226 (322)
Q Consensus 213 vMigRga~~~P~if 226 (322)
+||=...-..=.+|
T Consensus 148 vMiDT~~K~g~sl~ 161 (235)
T pfam04476 148 AMLDTAIKDGTTLF 161 (235)
T ss_pred EEEECCCCCCCCHH
T ss_conf 99874667897666
No 354
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=85.35 E-value=1 Score=25.06 Aligned_cols=77 Identities=26% Similarity=0.432 Sum_probs=48.0
Q ss_pred HHHHHCCCCCCC---EEEEEECCCH---HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898302745784---6999826998---9999988753104537774425641367766688999985589999999998
Q gi|254781167|r 38 KNILGFSTQEKP---LALQIGGADI---SKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAM 111 (322)
Q Consensus 38 ~~~~~~~~~e~p---~~~Ql~g~~p---~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~ 111 (322)
++|++.-..|+| .++|++|++| +++.+-.+++.+.|++.|-||-- |--|-++|+. ++++
T Consensus 97 ~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTn-----------GirlA~~~~~----~~~l 161 (475)
T COG1964 97 REMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTN-----------GIRLAFDPEY----VKKL 161 (475)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-----------CEEECCCHHH----HHHH
T ss_conf 999999985389998326722898664355899999776568618998257-----------5020137789----9889
Q ss_pred HCCCCEEEEEEEECCCCCC
Q ss_conf 5027906999861134566
Q gi|254781167|r 112 CKALSIPVTVKCRIGVDDQ 130 (322)
Q Consensus 112 ~~~~~~pvsvK~RlG~~~~ 130 (322)
+.+- .-.-.+-+=|.+..
T Consensus 162 ~~ag-~~tvYlsFDG~~e~ 179 (475)
T COG1964 162 REAG-VNTVYLSFDGVTPK 179 (475)
T ss_pred HHCC-CCEEEEECCCCCCC
T ss_conf 8658-85799942789986
No 355
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=85.34 E-value=3 Score=21.63 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=96.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCCEEEEE
Q ss_conf 6999826998999998875310-453777442564136776668899998558-------99999999985027906999
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVED-FGYNEINLNVGCPSARVHEGSFGACLMLNP-------DIVGDCIAAMCKALSIPVTV 121 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~-~g~~~idlN~GCP~~~v~~~g~GaaLl~~p-------~~~~~iv~~~~~~~~~pvsv 121 (322)
+++.=-++||+.|+++++.+.+ .+.- +=+.|=.|.|.+.+...+==++| +-..++.+-. +..++|+.|
T Consensus 131 vAvr~~s~d~~~fa~~vk~va~~~~~p---liL~s~dp~vl~aaL~~~~~~kPLlyaAt~~N~~~m~~LA-~~~~~Pl~V 206 (454)
T PRK04165 131 VALRNVSGDPEKFAKAVKKVAETTELP---LILCSFDPAVLKAALEVVADRRPLLYAATKDNWKEMAELA-KEYNCPLVV 206 (454)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH-HHCCCCEEE
T ss_conf 999917899899999999997216997---7998389999999999745379755227898899999999-874984799
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH--HHHHC-----CCCCCCC-
Q ss_conf 861134566532201455432000122012100135664025774212276610467876--66738-----8753025-
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYE--IKKEN-----PDLFIGL- 193 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~--l~~~~-----~~~~i~~- 193 (322)
+- .+.+.+.++++.++.+|++-|.+.+-|+.. ++ - -.+.-.|++ +++.+ |.+.+..
T Consensus 207 ~a-------~~L~~L~~l~~~~~~~GikdlVLDpg~~~~-----k~-t---l~~~~~IRRaAik~~~r~~gYP~i~~p~~ 270 (454)
T PRK04165 207 SA-------PNLEELKSLVKKLQAAGIKDIVLDPGTENL-----KE-T---LDNFTQIRRAAIKKGDRPLGYPIIAFPIT 270 (454)
T ss_pred EC-------CCHHHHHHHHHHHHHCCCCCEEECCCCCCH-----HH-H---HHHHHHHHHHHHHCCCCCCCCCEEECCHH
T ss_conf 77-------998999999999997698527888997448-----89-9---99999999999863787778756730233
Q ss_pred --CCCCCC--H-HHHHH--HHHCCCCEEEECCCCCHHHH-H--HHHHHHHCCCCCC
Q ss_conf --777789--9-89888--74203523441220001243-9--9999987199888
Q gi|254781167|r 194 --NGGLED--M-SQALK--ILPSVDGVMIGRAAYKNSAM-L--TTVDEYFSNPLTG 239 (322)
Q Consensus 194 --NGdi~~--~-~~a~~--~l~~~dgvMigRga~~~P~i-f--~~I~~~l~~~~~~ 239 (322)
++|-.+ . |.+.. +..+-.++||=... .||- + -..++.+++....
T Consensus 271 ~~~~d~~~~~~~E~~~As~~i~KYa~i~Vl~~~--~~~~llPll~lR~nIYTDPqk 324 (454)
T PRK04165 271 AWMAPPVSASMKEAVLASILIIKYADIMVLHSI--EPWALLPLLTLRQNIYTDPRK 324 (454)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCC--CHHHHHHHHHHHHHHCCCCCC
T ss_conf 205762001789999999999874658997168--878860589998760479999
No 356
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=85.20 E-value=3.1 Score=21.58 Aligned_cols=188 Identities=18% Similarity=0.228 Sum_probs=104.1
Q ss_pred HHHHHHHH---HCCCEEEEC----CCCCCHHHHCCCHHHHHH----CCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCE
Q ss_conf 89999998---289829981----703324776089789830----2745784699982699899999887531045377
Q gi|254781167|r 8 HYRFFARL---LTNNALLYT----EMIVADAILRGDKKNILG----FSTQEKPLALQIGGADISKLVEAAKIVEDFGYNE 76 (322)
Q Consensus 8 ~fR~l~r~---~~~~~~~~T----Emi~a~~l~~~~~~~~~~----~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~ 76 (322)
.++++++. .|.++++.. |+.+ |....++++++ .....-|+++++.+.+..+..+-|+..++.|+|.
T Consensus 23 ~l~~~v~~l~~~Gv~Gi~~~GstGE~~~---Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~A~~~Gada 99 (292)
T PRK03170 23 ALRKLVDYQIANGTDGLVVVGTTGESPT---LTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADG 99 (292)
T ss_pred HHHHHHHHHHHCCCCEEEECEECCCCCC---CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999779999996832414112---8999999999999987389712884378767999999999898759998
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EECCCCCCCCCCCHHHHHHHHCCCCCCHHHH
Q ss_conf 7442564136776668899998558999999999850279069998---6113456653220145543200012201210
Q gi|254781167|r 77 INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVK---CRIGVDDQIPAVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 77 idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK---~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti 153 (322)
|=+ -.|. -.+ .+.+-+.+-.+++.+++++||-+= -|.|.+ ...+.+..+.+ ...|.
T Consensus 100 v~v--~~P~--y~~--------~s~~~l~~~f~~ia~~~~~Pi~lYn~P~~tg~~------l~~~~l~~L~~--~~nv~- 158 (292)
T PRK03170 100 ALV--VTPY--YNK--------PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVD------ILPETVARLAE--HPNIV- 158 (292)
T ss_pred EEE--CCCC--CCC--------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC------CCHHHHHHHHC--CCCEE-
T ss_conf 996--1776--889--------999999999999986359976987378632767------69999999817--89989-
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 01356640257742122766104678766673887-53025777789989888-74203523441220001243999999
Q gi|254781167|r 154 HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALK-ILPSVDGVMIGRAAYKNSAMLTTVDE 231 (322)
Q Consensus 154 H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~-~l~~~dgvMigRga~~~P~if~~I~~ 231 (322)
|+ |+ .. .|++.+.++.+..++ +.+ .+|+ + .-... +.-|++|.+.|-+.+ -|..+.++-+
T Consensus 159 --------gi--Kd--ss--~d~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~l~~Ga~G~is~~~n~-~P~~~~~i~~ 219 (292)
T PRK03170 159 --------GI--KE--AT--GDLERVSELRELCPDDFAV-YSGD--D-ALALPFLALGGVGVISVTANV-APKEMAEMCD 219 (292)
T ss_pred --------EE--EE--CC--CCHHHHHHHHHHCCCCCEE-ECCC--H-HHHHHHHHHCCCEEEEEHHHH-HHHHHHHHHH
T ss_conf --------99--96--99--9999999999866987367-4584--8-999999994398699844764-4899999999
Q ss_pred HHCCCCC
Q ss_conf 8719988
Q gi|254781167|r 232 YFSNPLT 238 (322)
Q Consensus 232 ~l~~~~~ 238 (322)
.+..+..
T Consensus 220 ~~~~gd~ 226 (292)
T PRK03170 220 AALAGDF 226 (292)
T ss_pred HHHCCCH
T ss_conf 9987999
No 357
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=85.14 E-value=3.1 Score=21.56 Aligned_cols=181 Identities=17% Similarity=0.284 Sum_probs=92.4
Q ss_pred CCCCCEEEEEECCCH--------HHHHH-HHHHHHCCCCC---EEEECCCCC---HHHHHHHHHHHHHH--------HHH
Q ss_conf 457846999826998--------99999-88753104537---774425641---36776668899998--------558
Q gi|254781167|r 45 TQEKPLALQIGGADI--------SKLVE-AAKIVEDFGYN---EINLNVGCP---SARVHEGSFGACLM--------LNP 101 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p--------~~~~~-aa~~~~~~g~~---~idlN~GCP---~~~v~~~g~GaaLl--------~~p 101 (322)
....|+++|+..+.- ..++. ++...++.+.. .+.|.=|=- ..+....|+.|-++ .|-
T Consensus 46 e~~sPvIlq~s~g~~~~~~~~~l~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNI 125 (321)
T PRK07084 46 ETKSPVILQVSKGARSYANATLLRYMAQGAVEYAKELGSPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENV 125 (321)
T ss_pred HHCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHH
T ss_conf 97999899927487765883789999999999999858997789989999999999999980998799639979999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEECC----CCCCC-----CCCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHCCCCCC
Q ss_conf 9999999998502790699986113----45665-----32201455432000122012-----1001356640257742
Q gi|254781167|r 102 DIVGDCIAAMCKALSIPVTVKCRIG----VDDQI-----PAVALRNLVKSIKKSGVNGI-----WIHARKAILKGLSPKD 167 (322)
Q Consensus 102 ~~~~~iv~~~~~~~~~pvsvK~RlG----~~~~~-----~~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~ 167 (322)
.+..++++.... .++ ||-.-|| .++.. .+..-.+..+-+++.|+|.| |+||-.. + +.
T Consensus 126 ~~Tk~vv~~Ah~-~gv--~VEaElG~igG~ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk---~---~~ 196 (321)
T PRK07084 126 ALTKKVVEYAHQ-FDV--TVEGELGVLAGIEDEVSAEHHTYTQPEEVEDFVTKTGVDSLAISIGTSHGAFK---F---KP 196 (321)
T ss_pred HHHHHHHHHHHH-CCC--EEEEEEECCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCEEEEECCHHCCCCC---C---CC
T ss_conf 999999999726-399--69997503467566766640205999999999998699858642010036766---7---88
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 12276610467876667388753025777789989888742035234412200012439999998719988
Q gi|254781167|r 168 NRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLT 238 (322)
Q Consensus 168 ~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~~~ 238 (322)
....|.++++.+.++.+.++++|++.-|+-..+.+.........|-+- ++.|-|- .|++..+..+-.
T Consensus 197 ~~~~p~L~~d~L~~I~~~v~~vPLVLHGgS~~p~~~v~~~~~~Gg~~~--~~~G~~d--e~i~~Ai~~GI~ 263 (321)
T PRK07084 197 GECPPPLRFDILAEIEKRIPGFPIVLHGASSVPQELVETINQHGGKLK--DAIGIPE--EQLRKAAKSAVC 263 (321)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCCH--HHHHHHHHCCCE
T ss_conf 888744369999999985779986852899882788777875288555--6789999--999999986976
No 358
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=85.02 E-value=3 Score=21.65 Aligned_cols=233 Identities=18% Similarity=0.203 Sum_probs=110.7
Q ss_pred HHHHHHHHH----HCCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 789999998----289829981----70332477608978983----027457846999826998999998875310453
Q gi|254781167|r 7 RHYRFFARL----LTNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGY 74 (322)
Q Consensus 7 ~~fR~l~r~----~~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~ 74 (322)
-.+|++++. .|.++++.. |+.+ |....+.+++ +.....-|+++++.+.+..+..+-++.+++.|+
T Consensus 21 ~~~~~~i~~li~~~Gv~gi~v~GstGE~~~---Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~s~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 21 DVLRAIVDYLIEKQGVDGLYVNGSTGEGFL---LSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999998779989997935425213---89999999999999972898608735886459999999999986497
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEE---EECCCCCCCCCCCHHHHHHHHCCC-CCC
Q ss_conf 777442564136776668899998558999999999850-279069998---611345665322014554320001-220
Q gi|254781167|r 75 NEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCK-ALSIPVTVK---CRIGVDDQIPAVALRNLVKSIKKS-GVN 149 (322)
Q Consensus 75 ~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~-~~~~pvsvK---~RlG~~~~~~~~~~~~~~~~~~~~-g~~ 149 (322)
|.|=+ ..|.-. + ..+++. ..-.+++.+ +.++||-+= -+.|.+- + .+++..+.+. ++.
T Consensus 98 d~v~v--~~P~y~--~-------~~~~~~-~~~~~~i~~~~~~~piiiYn~P~~tg~~l--~----~~~l~~L~~~~~vv 159 (288)
T cd00954 98 DAISA--ITPFYY--K-------FSFEEI-KDYYREIIAAAASLPMIIYHIPALTGVNL--T----LEQFLELFEIPNVI 159 (288)
T ss_pred CEEEE--CCCCCC--C-------CCHHHH-HHHHHHHHHHCCCCCEEEECCCCCCCCCC--C----HHHHHHHHCCCCEE
T ss_conf 86773--799887--9-------997999-99999999857799654321765237689--9----99999996368978
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 1210013566402577421227661046787666738875302577778998988-874203523441220001243999
Q gi|254781167|r 150 GIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQAL-KILPSVDGVMIGRAAYKNSAMLTT 228 (322)
Q Consensus 150 ~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~-~~l~~~dgvMigRga~~~P~if~~ 228 (322)
.| |+ .. -|...+.++.+..+.-..+.+|.- +... .+.-|++|.+.|-+.+- |.++.+
T Consensus 160 --gi------------K~--s~--~d~~~~~~~~~~~~~~~~v~~G~d---~~~~~~~~~Ga~G~i~~~~n~~-p~~~~~ 217 (288)
T cd00954 160 --GV------------KF--TA--TDLYDLERIRAASPEDKLVLNGFD---EMLLSALALGADGAIGSTYNVN-GKRYRK 217 (288)
T ss_pred --EE------------EE--CC--CCHHHHHHHHHHCCCCCEEECCCH---HHHHHHHHCCCCEEEECHHHHH-HHHHHH
T ss_conf --99------------97--87--999999999997699824616957---9999999869989995767867-999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999871998888999889999999999999999999985228767998998999873899989999999
Q gi|254781167|r 229 VDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHIL 297 (322)
Q Consensus 229 I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~L 297 (322)
+-+.+..+... .-+. +...+..+..-.... +.....|..+.+ .|++.+. .|.=+
T Consensus 218 i~~~~~~gd~~-------~A~~----l~~~l~~~~~~~~~~--~~~~~~K~~l~~-~G~~~g~-~R~Pl 271 (288)
T cd00954 218 IFEAFNAGDID-------TARE----LQHVINDVITVLIKN--GLYPTLKAILRL-MGLDAGP-CRLPL 271 (288)
T ss_pred HHHHHHCCCHH-------HHHH----HHHHHHHHHHHHHCC--CCHHHHHHHHHH-CCCCCCC-CCCCC
T ss_conf 99999886999-------9999----999999999999816--989999999997-7999999-89899
No 359
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=84.79 E-value=3.2 Score=21.45 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-----CCCCH
Q ss_conf 9998875310453777442564136776668899998558999999999850279069998611345665-----32201
Q gi|254781167|r 62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQI-----PAVAL 136 (322)
Q Consensus 62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~-----~~~~~ 136 (322)
+-+..+.+.++||+.|.++-|.=. -..+.-.++++.+.+ .=+.|+.-+|+.+.. +...+
T Consensus 87 ~d~y~~~~~~lGf~~iEiSdg~i~-------------i~~~~~~~~I~~~~~---~G~~v~~EvG~K~~~~~~~~~~~~~ 150 (245)
T pfam02679 87 FDEYLRECKELGFDAIEISDGSIE-------------LPEEERLRLIRKAKK---AGFKVLSEVGKKDPEADSELTPDEL 150 (245)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC-------------CCHHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCCCHHHH
T ss_conf 999999999869988995688446-------------898999999999997---8997966415467543456799999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 455432000122012100135664025774212276610467876667388
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP 187 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~ 187 (322)
.+.++...++|+..|.|-+|-.--.|+ =+..+..+++.+.++.+.++
T Consensus 151 I~~~~~~LeaGA~~ViiEarEsg~~Gi----~~~~g~~r~~~i~~I~~~~~ 197 (245)
T pfam02679 151 IEQIERDLEAGADKVIIEARESGGVGL----YDSDGEVRTDLVEEILERLG 197 (245)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCC----CCCCCCCHHHHHHHHHHHCC
T ss_conf 999999997698289985101487565----08898871889999997388
No 360
>PRK12999 pyruvate carboxylase; Reviewed
Probab=84.56 E-value=3.3 Score=21.38 Aligned_cols=51 Identities=31% Similarity=0.406 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 32201455432000122012100135664025774212276610467876667388753025
Q gi|254781167|r 132 PAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
+.+.++++++.+++.|++.|+| +-+ .|+ -.|.+-++.|.+||+.+ ++||-.
T Consensus 690 ~l~yy~~~a~~l~~~G~~~l~I---KDM-AGL------l~P~aa~~LV~aLk~~~-~lPIhl 740 (1147)
T PRK12999 690 DLDYYVDLAKELEAAGAHILAI---KDM-AGL------LKPAAAYKLVSALKEEV-DLPIHL 740 (1147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE---CCC-CCC------CCHHHHHHHHHHHHHHC-CCCEEE
T ss_conf 6999999999999768988997---144-546------88799999999998616-984598
No 361
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=83.89 E-value=2.4 Score=22.36 Aligned_cols=81 Identities=30% Similarity=0.423 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EEEE-----EC-C-
Q ss_conf 6998999998875310453777-442564136776668899998558999999999850279069-9986-----11-3-
Q gi|254781167|r 56 GADISKLVEAAKIVEDFGYNEI-NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV-TVKC-----RI-G- 126 (322)
Q Consensus 56 g~~p~~~~~aa~~~~~~g~~~i-dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv-svK~-----Rl-G- 126 (322)
.+|++.=.+-++.+..+|.|.| ||-.|=. +.++-+++-+.+++|| ||-+ |. |
T Consensus 72 ~~d~~~E~~K~~~A~~~GADtvMDLStGgd-------------------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~~ 132 (421)
T pfam01964 72 ISDIDEEVEKAKVAIKYGADTVMDLSTGGD-------------------LDEIRRAILENSPVPVGTVPIYQAAERKGGS 132 (421)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCCC-------------------HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC
T ss_conf 798899999999999839985776577746-------------------6999999997399867761499999996599
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 456653220145543200012201210013
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHAR 156 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~R 156 (322)
.. +-+.+.+++.++.=.+.|+|.+|||+=
T Consensus 133 ~~-~mt~d~~~~~ie~qa~~GVDfmTiH~G 161 (421)
T pfam01964 133 VV-DMTEDDLFDVIEEQAKDGVDFMTIHAG 161 (421)
T ss_pred HH-HCCHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 45-499999999999999728877874000
No 362
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=83.20 E-value=3.4 Score=21.26 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=46.4
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 442564136776668899998558---99999999985027906999861134566532201455432000122012100
Q gi|254781167|r 78 NLNVGCPSARVHEGSFGACLMLNP---DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH 154 (322)
Q Consensus 78 dlN~GCP~~~v~~~g~GaaLl~~p---~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH 154 (322)
||+||.- |+..+.+-+++.... ..-.+.++.-...-...|.+|. ++.+.+.++...+.+.|+..-.|+
T Consensus 11 DLkMs~G--KiaAQ~~HAav~~~~~~~~~~~~~~~~W~~~G~~KIvlkv-------~~e~~L~~l~~~a~~~gl~~~~V~ 81 (116)
T PRK04322 11 DLKMGKG--KIAAQVAHAAVSAALKAMKSNREWFEEWLNEGQKKVVLKV-------NSEEELLELKKKAERLGLPTALIR 81 (116)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7898801--6999987999999999986598999999957994799985-------999999999999998799689997
Q ss_pred --HHHHHHH
Q ss_conf --1356640
Q gi|254781167|r 155 --ARKAILK 161 (322)
Q Consensus 155 --~Rt~~~~ 161 (322)
|||.+-.
T Consensus 82 DAG~Tei~p 90 (116)
T PRK04322 82 DAGLTQIPP 90 (116)
T ss_pred CCCCCCCCC
T ss_conf 688735389
No 363
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.14 E-value=3.7 Score=20.98 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=83.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-----HH---H-----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5784699982699899999887531045377744256413677-----66---6-----889999855899999999985
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARV-----HE---G-----SFGACLMLNPDIVGDCIAAMC 112 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v-----~~---~-----g~GaaLl~~p~~~~~iv~~~~ 112 (322)
.+.+++.=+-+.+++.....++-+.+-|...|++-+-.|...- .+ . --|++-..+++.+.+.+++=.
T Consensus 14 ~~~~iipVvr~~~~e~a~~~a~aL~~gGi~~iEiTlrt~~a~~~i~~l~~~~~~~~p~~~iGaGTVl~~~~~~~a~~aGA 93 (223)
T PRK07114 14 KSTGMVPVFYHSDIEVAKKVVKACYDGGVRAFEFTNRGDFAHEVFGELVKYAAKECPEMILGVGSIVDAATAALYIQLGA 93 (223)
T ss_pred HHCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf 87997999982899999999999998899889995889658999999999998668980896551889999999998599
Q ss_pred CCCCEEEEEEE---------ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02790699986---------113456653220145543200012201210013566402577421227661046787666
Q gi|254781167|r 113 KALSIPVTVKC---------RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIK 183 (322)
Q Consensus 113 ~~~~~pvsvK~---------RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~ 183 (322)
+ .=||-=+ +.|+.--+...+--|+.. +.+.|++.+-+-| .+ .-|+ ++++.++
T Consensus 94 ~---FiVSP~~~~~v~~~~~~~~~~~iPGv~TptEi~~-A~~~G~~~vK~FP----------a~--~~G~---~~lkal~ 154 (223)
T PRK07114 94 N---FVVGPLFNEDIAKVCNRRKIPYSPGCGSVSEIGF-AEELGCEIVKIFP----------GD--VYGP---EFVKAIK 154 (223)
T ss_pred C---EEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHCCCCEEEECC----------CC--CCCH---HHHHHHH
T ss_conf 8---9999999999999999839975373199999999-9987999798897----------32--3599---9999984
Q ss_pred HHCCCCCCCCCCCCC-CHHHHHHHHH-CCCCEEEECCCCCHHHH
Q ss_conf 738875302577778-9989888742-03523441220001243
Q gi|254781167|r 184 KENPDLFIGLNGGLE-DMSQALKILP-SVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 184 ~~~~~~~i~~NGdi~-~~~~a~~~l~-~~dgvMigRga~~~P~i 225 (322)
.-+|++++...|||. |.+.+.+.++ |+.+|=+|.....+.++
T Consensus 155 ~p~p~~~~~PtGGV~ps~~N~~~~l~ag~~~vG~GS~l~~~~~i 198 (223)
T PRK07114 155 GPMPWTSIMPTGGVEPTEENLKSWFKAGATCVGMGSKLFPKDKL 198 (223)
T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHCCCEEEEECHHHCCHHHH
T ss_conf 64999968879998873550999996899799988463899998
No 364
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=83.10 E-value=3.7 Score=20.96 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=79.0
Q ss_pred HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 30274578469998269989999988753104537774425641367766688999985589999999998502790699
Q gi|254781167|r 41 LGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 (322)
Q Consensus 41 ~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvs 120 (322)
.+....+.|+.+|.+|.+.++|.+-|+.+.+.+.+ +..=-|. +..| .+.++.+.+ -++++.
T Consensus 47 ~~~~~~~~~l~~qv~~~~~e~M~~~a~~l~~~~~n---vvVKIP~---t~~G------------l~ai~~L~~-~Gi~vn 107 (220)
T PRK12653 47 HEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIAD---IVVKVPV---TAEG------------LAAIKMLKA-EGIPTL 107 (220)
T ss_pred HHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCC---EEEEECC---CHHH------------HHHHHHHHH-CCCCEE
T ss_conf 99808998589998758899999999999873578---0899488---5789------------999999988-298778
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH----HCCCCCCCCCC
Q ss_conf 986113456653220145543200012201210-0135664025774212276610467876667----38875302577
Q gi|254781167|r 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSPKDNRKIPNLDYDIVYEIKK----ENPDLFIGLNG 195 (322)
Q Consensus 121 vK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~----~~~~~~i~~NG 195 (322)
+-.= + ...=+-.+..+|++.+.. =||-.. .|.+ | .+.+.++++ ...+..| .-.
T Consensus 108 ~Tav--y--------s~~Qa~~Aa~aGA~yvsPyvgR~~d-~g~D-------g---~~~i~~i~~~~~~~~~~tkI-LaA 165 (220)
T PRK12653 108 GTAV--Y--------GAAQGLLSALAGAEYVAPYVNRIDA-QGGS-------G---IQTVTDLHQLLKMHAPQAKV-LAA 165 (220)
T ss_pred EEEC--C--------CHHHHHHHHHCCCCEEEEEEEEHHH-CCCC-------H---HHHHHHHHHHHHHCCCCCEE-EEE
T ss_conf 5210--6--------7999999998599888444250643-3898-------2---66899999999976999889-998
Q ss_pred CCCCHHHHHHHH-HCCCCEEEEC
Q ss_conf 778998988874-2035234412
Q gi|254781167|r 196 GLEDMSQALKIL-PSVDGVMIGR 217 (322)
Q Consensus 196 di~~~~~a~~~l-~~~dgvMigR 217 (322)
.+++.++..+.. .|||.+-|.=
T Consensus 166 SiR~~~~v~~a~~~Gad~iTip~ 188 (220)
T PRK12653 166 SFKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred ECCCHHHHHHHHHCCCCEEECCH
T ss_conf 38999999999986999998399
No 365
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=83.04 E-value=3.7 Score=20.95 Aligned_cols=144 Identities=16% Similarity=0.200 Sum_probs=80.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEE
Q ss_conf 5784699982699899999887531045377744256413677666889999855899999999985027--90699986
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL--SIPVTVKC 123 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~--~~pvsvK~ 123 (322)
..-|+..=|.++.++... .++...+.||..+-+-.|=. +++.-.+.++++++++ ++.+.|--
T Consensus 71 ~~ip~~~~l~~~~~~~~~-~~~~~~~~G~~~~KiKvG~~---------------~~~~Di~~i~~ir~~~~~~~~l~vDa 134 (263)
T cd03320 71 NRIPVNALLPAGDAAALG-EAKAAYGGGYRTVKLKVGAT---------------SFEEDLARLRALREALPADAKLRLDA 134 (263)
T ss_pred CCCCEEEECCCCCHHHHH-HHHHHHHCCCCEEEEEECCC---------------CHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 667469984799899999-99999877998899998999---------------95999999999999669997799989
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 11345665322014554320001220121001356640257742122766104678766673887530257777899898
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQA 203 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a 203 (322)
--||+ .....++++.+++.|+.+|- | ..++-||+-..+ ....+||...-.+.+.+|+
T Consensus 135 N~~wt----~~~A~~~~~~l~~~~l~~iE---------------q-P~~~~d~~~~~~---~~~~ipi~~DEs~~~~~d~ 191 (263)
T cd03320 135 NGGWS----LEEALAFLEALAAGRIEYIE---------------Q-PLPPDDLAELRR---LAAGVPIALDESLRRLDDP 191 (263)
T ss_pred CCCCC----HHHHHHHHHHHCCCCEEEEE---------------C-CCCCCCHHHHHH---HCCCCCEECCCCCCCHHHH
T ss_conf 87748----99999999871516835886---------------6-789999999986---0379985435644787889
Q ss_pred HHHHH--CCCCEEEECCCCCHHHHHHH
Q ss_conf 88742--03523441220001243999
Q gi|254781167|r 204 LKILP--SVDGVMIGRAAYKNSAMLTT 228 (322)
Q Consensus 204 ~~~l~--~~dgvMigRga~~~P~if~~ 228 (322)
...+. .+|.+.|-=.-.|-..-..+
T Consensus 192 ~~~~~~~a~d~i~iK~~~~GGi~~~~~ 218 (263)
T cd03320 192 LALAAAGALGALVLKPALLGGPRALLE 218 (263)
T ss_pred HHHHHCCCCCEEEECCHHCCCHHHHHH
T ss_conf 999980999889967201089999999
No 366
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=82.44 E-value=3.9 Score=20.79 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCEEEEE-ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEE
Q ss_conf 78469998-26998999998875310453777442564136776668899998558999999999850279----06999
Q gi|254781167|r 47 EKPLALQI-GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS----IPVTV 121 (322)
Q Consensus 47 e~p~~~Ql-~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~----~pvsv 121 (322)
..++.+-+ +.-=|.++..+++.+.+.|+|.+.+..-+-. +.+....+++.+..+ +-||+
T Consensus 53 g~~iFlDlKl~DIpnTv~~~~~~i~~~g~d~vtvH~~~G~----------------~~l~a~~~~~~~~~~~~kll~Vt~ 116 (231)
T PRK00230 53 GFKVFLDLKLHDIPNTVAKAVRAAAKLGVDMVTVHASGGA----------------RMMAAAREGLEPGGSRPLLIAVTV 116 (231)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCH----------------HHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9968987202265458999999998579989998257859----------------999999998871489875999996
Q ss_pred EEE--------CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-------
Q ss_conf 861--------13456653220145543200012201210013566402577421227661046787666738-------
Q gi|254781167|r 122 KCR--------IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN------- 186 (322)
Q Consensus 122 K~R--------lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~------- 186 (322)
=+= +|++. .-.+....+++...++|++.+.--|- -+..+++..
T Consensus 117 LTS~~~~~l~~~~~~~-~~~~~v~~~a~~a~~~g~dGiVcs~~---------------------e~~~ir~~~~~~~~iv 174 (231)
T PRK00230 117 LTSMDEEDLAELGINL-SLEEQVLRLAKLAQEAGLDGVVCSAQ---------------------EAAALREATGPDFLLV 174 (231)
T ss_pred ECCCCHHHHHHCCCCC-CHHHHHHHHHHHHHHHCCCEEECCHH---------------------HHHHHHHHCCCCCEEE
T ss_conf 2368988998667578-99999999999999969984863888---------------------9999986459871898
Q ss_pred -CCCCCC-C-CCC---CCCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf -875302-5-777---78998988874203523441220001243
Q gi|254781167|r 187 -PDLFIG-L-NGG---LEDMSQALKILPSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 187 -~~~~i~-~-NGd---i~~~~~a~~~l~~~dgvMigRga~~~P~i 225 (322)
|.+-.. . +|| +.|+++|.+ .|+|-+-|||+++..+--
T Consensus 175 TPGIr~~~~~~~DQ~rv~TP~~Ai~--~GAD~iVVGR~I~~s~dP 217 (231)
T PRK00230 175 TPGIRPAGSDAGDQKRVMTPAQAIA--AGSDYIVVGRPITQAEDP 217 (231)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHH--CCCCEEEECCCCCCCCCH
T ss_conf 6772778887567465689999998--799999989845689999
No 367
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=82.12 E-value=1.9 Score=23.08 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHH-H
Q ss_conf 532201455432000122012100135664025774212276610467876667388-75302577778998988874-2
Q gi|254781167|r 131 IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQALKIL-P 208 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l-~ 208 (322)
++.+..+++++.+.+.|+..+=|==||. .--|.|+.+++..| ++.| |=|-|.|.++..+-. .
T Consensus 17 ~~~~~A~~lA~aL~egG~~~~EvTlRT~---------------~A~~aI~~l~~~~P~~~~i-GAGTVL~~~Q~~~A~~A 80 (205)
T TIGR01182 17 DDVEDALPLAKALIEGGLRVLEVTLRTP---------------VALEAIRALRKEVPKDALI-GAGTVLNPEQLRQAVAA 80 (205)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC---------------CHHHHHHHHHHHCCCCCEE-CCCCCCCHHHHHHHHHC
T ss_conf 6787778999999867980898851472---------------1689999999728233487-16764898999999970
Q ss_pred CCC
Q ss_conf 035
Q gi|254781167|r 209 SVD 211 (322)
Q Consensus 209 ~~d 211 (322)
|+|
T Consensus 81 GA~ 83 (205)
T TIGR01182 81 GAQ 83 (205)
T ss_pred CCC
T ss_conf 895
No 368
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=81.94 E-value=0.72 Score=26.21 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=51.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 9982699899999887531045377744256413677-666889999855899999999985027906999861134566
Q gi|254781167|r 52 LQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARV-HEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQ 130 (322)
Q Consensus 52 ~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v-~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~ 130 (322)
+-|=++--++|...|....+ +.+-|= |-+.- +-.-.|-.....-+++...++.+++ .+++||.=+-
T Consensus 66 ~NlE~a~teEml~ia~~~kP---~~vtLV---Pe~r~evTTegGlD~~~~~~~l~~~v~~L~~-~GirVSLFiD------ 132 (243)
T COG0854 66 FNLEMAPTEEMLAIALKTKP---HQVTLV---PEKREEVTTEGGLDVAGQLDKLRDAVRRLKN-AGIRVSLFID------ 132 (243)
T ss_pred EECCCCCHHHHHHHHHHCCC---CEEEEC---CCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEC------
T ss_conf 40043744899999985598---747857---8964641455563355002469999999985-7976999727------
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5322014554320001220121001356640
Q gi|254781167|r 131 IPAVALRNLVKSIKKSGVNGIWIHARKAILK 161 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~ 161 (322)
.+. +=++...+.|++.|-+| |..|.
T Consensus 133 ~d~----~qi~aa~~~gA~~IELh--TG~Ya 157 (243)
T COG0854 133 PDP----EQIEAAAEVGAPRIELH--TGPYA 157 (243)
T ss_pred CCH----HHHHHHHHHCCCEEEEE--CCCCC
T ss_conf 998----99999998499879984--36656
No 369
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=81.88 E-value=2.8 Score=21.89 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=37.3
Q ss_pred HHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 46787666738----875302577778998988874-20352344122000124399999
Q gi|254781167|r 176 YDIVYEIKKEN----PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 176 ~~~i~~l~~~~----~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~I~ 230 (322)
..+|+.+.... +.++|.+-|+|+.-+++..+. .++||+.||++.+.-.-++.-++
T Consensus 186 ~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~ 245 (251)
T COG0149 186 HAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILE 245 (251)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEECCHHHHHHHH
T ss_conf 999999999744877875799717768557999965899986897213305255999999
No 370
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=81.72 E-value=4.1 Score=20.61 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCH-----HHHHHC------CCCCCCEEEEE---ECCCHHHHHHHHHHH
Q ss_conf 8607899999982898299817033247760897-----898302------74578469998---269989999988753
Q gi|254781167|r 4 WTDRHYRFFARLLTNNALLYTEMIVADAILRGDK-----KNILGF------STQEKPLALQI---GGADISKLVEAAKIV 69 (322)
Q Consensus 4 ~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~-----~~~~~~------~~~e~p~~~Ql---~g~~p~~~~~aa~~~ 69 (322)
--|+|+=+++-+.|.|.+++--=+..--+=+.++ ..++.+ .....+++.-+ ....++...+.|+.+
T Consensus 19 aYD~~~A~~~~~agvD~iLVGDSlgmv~~G~~~T~~vtld~mi~H~~aV~rg~~~a~iv~DmPf~sy~~~~~a~~na~~l 98 (240)
T cd06556 19 AYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTF 98 (240)
T ss_pred ECCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCHHHHHHHHHHH
T ss_conf 53889999998779989998067898307886776589999999999997479985399836344238999999999999
Q ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC---------CCCC----CCCCCCH
Q ss_conf 10453777442564136776668899998558999999999850279069998611---------3456----6532201
Q gi|254781167|r 70 EDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI---------GVDD----QIPAVAL 136 (322)
Q Consensus 70 ~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl---------G~~~----~~~~~~~ 136 (322)
.+.|+|.|-|--|- ...+++++++++ ++||-.-+-+ |+.- .+....+
T Consensus 99 ~~~Ga~aVKlEgg~-------------------~~~~~i~~L~~~-gIpV~gHiGltPQ~~~~~gg~k~qGk~~~~a~~l 158 (240)
T cd06556 99 MRAGAAGVKIEGGE-------------------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred HHCCCCEEEECCCH-------------------HHHHHHHHHHHC-CCCEEEEECCCCCEEECCCCCEEECCCHHHHHHH
T ss_conf 98599989979875-------------------089999999987-9947976358860011047722432768999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 455432000122012100135664025774212276610467876667388753025777
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGG 196 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGd 196 (322)
++-++.++++|+..|-+-+= ..+..+++.+.. ++|+|++|.
T Consensus 159 ~~dA~ale~AGa~~ivlE~v------------------p~~la~~It~~~-~IPtIGIGA 199 (240)
T cd06556 159 IADALAYAPAGADLIVMECV------------------PVELAKQITEAL-AIPLAGIGA 199 (240)
T ss_pred HHHHHHHHHCCCEEEEEECC------------------CHHHHHHHHHCC-CCCEEEECC
T ss_conf 99999998479849987458------------------499999999569-998997277
No 371
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=81.14 E-value=2.7 Score=21.95 Aligned_cols=98 Identities=15% Similarity=0.304 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC---CHHHHHHH
Q ss_conf 256413677666889999855899999999985027906999861134566532201455432000122---01210013
Q gi|254781167|r 80 NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV---NGIWIHAR 156 (322)
Q Consensus 80 N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~---~~itiH~R 156 (322)
.+|||.=|| +|+-+.+.+++.++.+ .+.||-+=+ |- .+..++.+.+..+...++ +.+.+||-
T Consensus 107 ~~~~~~~KI-----aS~d~~n~~Li~~i~~-----~~kpiiiSt--G~---s~~~EI~~av~~~~~~~~~~~~i~llhC~ 171 (329)
T TIGR03569 107 DLGVPRFKI-----PSGEITNAPLLKKIAR-----FGKPVILST--GM---ATLEEIEAAVGVLRDAGTPDSNITLLHCT 171 (329)
T ss_pred HCCCCEEEE-----CCCCCCCHHHHHHHHH-----HCCCEEEEC--CC---CHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 649997997-----9231054899999997-----489789967--86---23999999999999748865576886437
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 566402577421227661046787666738875302577778998
Q gi|254781167|r 157 KAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMS 201 (322)
Q Consensus 157 t~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~ 201 (322)
+. |=.+ ...++...+..+++.+ +.+|+..+--.+..
T Consensus 172 s~---YP~~-----~~~~nL~~i~~lk~~f-~~~iG~SDHt~g~~ 207 (329)
T TIGR03569 172 TE---YPAP-----FEDVNLNAMDTLKEAF-DLPVGYSDHTLGIE 207 (329)
T ss_pred CC---CCCC-----HHHCCHHHHHHHHHHC-CCCEEECCCCCCCH
T ss_conf 88---9999-----3764789999999985-99868479789836
No 372
>PRK08999 hypothetical protein; Provisional
Probab=80.99 E-value=2.2 Score=22.65 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=49.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 43200012201210013566402577421227661046787666738875302577778998988874-20352344122
Q gi|254781167|r 140 VKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 140 ~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRg 218 (322)
+..+++.|+|.+++-|= +.-.| +. ..+++-|+.+.++.+.. .+|+++-|||. .+|..... .|+.||-.=|+
T Consensus 239 ~~~A~~~g~Dyi~lsPV---~~T~s-hp--~~~~lGw~~f~~l~~~~-~iPv~ALGGi~-~~dl~~a~~~Ga~GiA~Ir~ 310 (312)
T PRK08999 239 LAHAQQLGVDFAVLSPV---QPTAS-HP--GAPPLGWDGFAALIAGV-PLPVYALGGMG-PGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred HHHHHHHCCCEEEECCC---CCCCC-CC--CCCCCCHHHHHHHHHHC-CCCEEEECCCC-HHHHHHHHHHCCEEEEEEEE
T ss_conf 99998708996998154---46478-99--99967899999999738-99989988889-99999999809969977631
Q ss_pred C
Q ss_conf 0
Q gi|254781167|r 219 A 219 (322)
Q Consensus 219 a 219 (322)
.
T Consensus 311 ~ 311 (312)
T PRK08999 311 F 311 (312)
T ss_pred C
T ss_conf 5
No 373
>KOG4201 consensus
Probab=80.88 E-value=3.9 Score=20.79 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=45.3
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCC
Q ss_conf 000122012100135664025774212276610467876667388-75302577778998988874-2035234412200
Q gi|254781167|r 143 IKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENP-DLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAY 220 (322)
Q Consensus 143 ~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~ 220 (322)
+.+-|+..+-|.-|. ..+...|......+.+..| ++.+++-.||++++|+...- .|+.+|++|...+
T Consensus 202 aleiGakvvGvNNRn-----------L~sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslm 270 (289)
T KOG4201 202 ALEIGAKVVGVNNRN-----------LHSFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLM 270 (289)
T ss_pred HHHHCCEEEEECCCC-----------CCEEEECHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 997375787434776-----------413665102578898508632698741578887889999874861898527777
Q ss_pred C
Q ss_conf 0
Q gi|254781167|r 221 K 221 (322)
Q Consensus 221 ~ 221 (322)
.
T Consensus 271 k 271 (289)
T KOG4201 271 K 271 (289)
T ss_pred H
T ss_conf 2
No 374
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=80.27 E-value=4.6 Score=20.27 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 589999999998502790699986113456
Q gi|254781167|r 100 NPDIVGDCIAAMCKALSIPVTVKCRIGVDD 129 (322)
Q Consensus 100 ~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~ 129 (322)
.++.+.+++++.++. ++|+ |+|.+.
T Consensus 114 ~~e~~~~vv~~ak~~-~ipI----RIGvN~ 138 (367)
T PRK00366 114 RDERFKEVVEAAKDY-GIPI----RIGVNA 138 (367)
T ss_pred CHHHHHHHHHHHHHC-CCCE----EECCCC
T ss_conf 648899999999984-9976----644677
No 375
>pfam00793 DAHP_synth_1 DAHP synthetase I family. Members of this family catalyse the first step in aromatic amino acid biosynthesis from chorismate. E-coli has three related synthetases, which are inhibited by different aromatic amino acids. This family also includes KDSA which has very similar catalytic activity but is involved in the first step of liposaccharide biosynthesis.
Probab=80.26 E-value=3.6 Score=21.04 Aligned_cols=84 Identities=23% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC-CHH-HHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999855899999999985027906999861134566532201455432000122-012-10013566402577421227
Q gi|254781167|r 94 GACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV-NGI-WIHARKAILKGLSPKDNRKI 171 (322)
Q Consensus 94 GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~-~~i-tiH~Rt~~~~g~s~~~~~~~ 171 (322)
||.++++.++. +++ ..++.||-+|=-.. .+...+...++.+...|. +.+ ..|-=++ .|.+ .++.
T Consensus 113 gAr~~~~~~l~----~~a-s~~~~pV~~Kng~~----~a~~~~~~a~e~~~~~G~~~~~~~~erg~r--~g~~--~n~~- 178 (271)
T pfam00793 113 GARTTESQDLL----EAA-SGTSKPVGLKRGTD----LAIDEMLAAAEYHLFLGNTPGNILCERGIR--GGYG--PNRL- 178 (271)
T ss_pred CCCCCCCHHHH----HHH-HCCCCEEEECCCCC----CCHHHHHHHHHHHHHHCCCCCCCCEEEEEC--CCCC--CCCC-
T ss_conf 55112589999----998-52698478258776----899999999999998568789841468974--7888--7777-
Q ss_pred CCCHHHHHHHHHHHCCCCCCC
Q ss_conf 661046787666738875302
Q gi|254781167|r 172 PNLDYDIVYEIKKENPDLFIG 192 (322)
Q Consensus 172 ~~~~~~~i~~l~~~~~~~~i~ 192 (322)
..|+..+..+++..+.+||+
T Consensus 179 -~~d~~~~~~lk~~~~~~pVi 198 (271)
T pfam00793 179 -TLDVSAVPILKEETGHLPVM 198 (271)
T ss_pred -HHHHHHHHHHHHHCCCCCEE
T ss_conf -68899999999737899837
No 376
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=80.19 E-value=4.1 Score=20.66 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=59.8
Q ss_pred HHHHHHHHCCCC--EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999850279--069998611345665322014554320001220121001356640257742122766104678766
Q gi|254781167|r 105 GDCIAAMCKALS--IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEI 182 (322)
Q Consensus 105 ~~iv~~~~~~~~--~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l 182 (322)
.+.+++++++++ +++.+-.=-+| +.....++++.+++.++.++- ...++-||+..+++
T Consensus 81 ~~~v~~ir~~~G~~~~l~vDaN~~~----~~~~A~~~~~~l~~~~l~wiE----------------eP~~~~d~~~~~~l 140 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAW----TPKEAIRLIRALEKYGLAWIE----------------EPCAPDDLEGYAAL 140 (229)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHHHHHHCCCCEEE----------------CCCCCCCHHHHHHH
T ss_conf 9999999996699986999899999----999999999985213983764----------------67766275899999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHH--CCCCEEEECC
Q ss_conf 67388753025777789989888742--0352344122
Q gi|254781167|r 183 KKENPDLFIGLNGGLEDMSQALKILP--SVDGVMIGRA 218 (322)
Q Consensus 183 ~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dgvMigRg 218 (322)
++.. .+||.+.-.+.+.++..++++ .+|.+++-=.
T Consensus 141 ~~~~-~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~ 177 (229)
T cd00308 141 RRRT-GIPIAADESVTTVDDALEALELGAVDILQIKPT 177 (229)
T ss_pred HCCC-CCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6136-998637876789999999999742210445766
No 377
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=80.17 E-value=4.6 Score=20.24 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=79.9
Q ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 83027457846999826998999998875310453777442564136776668899998558999999999850279069
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
+.+....+.|+.+|.+|.|+++|.+-|+.+.+.+.. +-.=-|. +..| .+.++.+.+ -++++
T Consensus 46 i~~~~~~~~~l~~ev~~~d~~~m~~~a~~l~~~~~~---ivVKIP~---t~~G------------l~ai~~L~~-~gi~v 106 (220)
T PRK12655 46 LQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNAIPG---IVVKIPV---TAEG------------LAAIKKLKK-EGIPT 106 (220)
T ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC---EEEECCC---CHHH------------HHHHHHHHH-CCCCE
T ss_conf 999828999789999559999999999999974787---3998688---7789------------999999998-69978
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH----CCCCCCCCC
Q ss_conf 9986113456653220145543200012201210-01356640257742122766104678766673----887530257
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSPKDNRKIPNLDYDIVYEIKKE----NPDLFIGLN 194 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~----~~~~~i~~N 194 (322)
.+-.= ++ ..=+-.+..+|++.+.. =||-. ..|.. -.+.+.++.+. .++..| .-
T Consensus 107 n~Tav--ys--------~~Qa~~Aa~aGA~YvsPyvGR~~-d~G~D----------g~~~i~~i~~~~~~~~~~tkI-La 164 (220)
T PRK12655 107 LGTAV--YS--------AAQGLLAALAGAKYVAPYVNRVD-AQGGD----------GIRMVQELQTLLEMHAPESMV-LA 164 (220)
T ss_pred EEEEC--CC--------HHHHHHHHHCCCCEEEEEHHHHH-HCCCC----------HHHHHHHHHHHHHHCCCCCEE-EE
T ss_conf 99851--78--------99999999859978963210575-55898----------489999999999975999689-99
Q ss_pred CCCCCHHHHHHHH-HCCCCEEEEC
Q ss_conf 7778998988874-2035234412
Q gi|254781167|r 195 GGLEDMSQALKIL-PSVDGVMIGR 217 (322)
Q Consensus 195 Gdi~~~~~a~~~l-~~~dgvMigR 217 (322)
..|++.++..+.. .|||.+-|.=
T Consensus 165 ASiR~~~~v~~a~~~Gad~vTipp 188 (220)
T PRK12655 165 ASFKTPRQALDCLLAGCQSITLPL 188 (220)
T ss_pred EECCCHHHHHHHHHCCCCEEEECH
T ss_conf 838999999999986999998199
No 378
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=80.15 E-value=4.6 Score=20.24 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=80.2
Q ss_pred HHHCCCCCCCEEEEEECCCHHHHHHHHH-HHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 8302745784699982699899999887-531045377744256413677666889999855899999999985027906
Q gi|254781167|r 40 ILGFSTQEKPLALQIGGADISKLVEAAK-IVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP 118 (322)
Q Consensus 40 ~~~~~~~e~p~~~Ql~g~~p~~~~~aa~-~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p 118 (322)
+.+....+.|+.+|.+|.++++|.+-|+ +....+-+ +..==|. +..| .+.++.+.+ -+++
T Consensus 47 i~~~i~~~~~ls~qv~~~d~~~mi~~a~~i~~~~~~n---v~VKIP~---t~~G------------lkai~~L~~-~gi~ 107 (222)
T PRK12656 47 VREIIGDEASIHVQVVAQDYEGILKDAAEIRRQCGDD---VYIKVPV---TPAG------------LAAIKTLKA-EGYH 107 (222)
T ss_pred HHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCC---EEEECCC---CHHH------------HHHHHHHHH-CCCC
T ss_conf 9998299988899976398999999999999855767---8996688---7889------------999999997-5986
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHH----HHCCCCCCCC
Q ss_conf 99986113456653220145543200012201210-013566402577421227661046787666----7388753025
Q gi|254781167|r 119 VTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSPKDNRKIPNLDYDIVYEIK----KENPDLFIGL 193 (322)
Q Consensus 119 vsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~----~~~~~~~i~~ 193 (322)
+.+-.= + ...=+-.+..+|++.+.. =||-.. .|..+ .+.+.++. ....+..| .
T Consensus 108 vn~Tav--f--------s~~Qa~~Aa~aGA~yvsPf~GRi~d-~G~Dg----------~~~i~~i~~~~~~~~~~tkI-L 165 (222)
T PRK12656 108 ITATAI--Y--------TTFQGLLAIEAGADYLAPYYNRMEN-LNIDS----------EAVIGQLAEAINRENSNSKI-L 165 (222)
T ss_pred EEEEEE--C--------CHHHHHHHHHCCCCEEEECCCCHHH-CCCCC----------HHHHHHHHHHHHHCCCCCEE-E
T ss_conf 568872--7--------9999999998699899971464875-49992----------89999999999855999619-8
Q ss_pred CCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHHHHH
Q ss_conf 77778998988874-203523441220001243999
Q gi|254781167|r 194 NGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAMLTT 228 (322)
Q Consensus 194 NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~if~~ 228 (322)
-..|++.++..+.. .|||.+-|. |-+|.+
T Consensus 166 ~ASiR~~~~v~~a~~~G~d~iTip------p~v~~~ 195 (222)
T PRK12656 166 AASFKNVAQVNKAFALGAQAVTAG------PDVFEA 195 (222)
T ss_pred EECCCCHHHHHHHHHCCCCEEECC------HHHHHH
T ss_conf 652689999999998699999859------999999
No 379
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=80.13 E-value=2.8 Score=21.91 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=12.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 6999826998999998875310453777442
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEINLN 80 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN 80 (322)
...|+.-.|++ +++.+.+.|+..+-|-
T Consensus 41 ~s~~~nv~N~~----~~~~~~~~G~~rvvls 67 (232)
T pfam01136 41 ASTQANVTNSE----ALRFLAELGAKRVVLA 67 (232)
T ss_pred EEECCCCCCHH----HHHHHHHCCCCEEEEC
T ss_conf 96055577899----9999998699579656
No 380
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=79.90 E-value=4.7 Score=20.18 Aligned_cols=128 Identities=17% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 31045377744256413677666889999855899999999985027906999861134566532201455432000122
Q gi|254781167|r 69 VEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV 148 (322)
Q Consensus 69 ~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~ 148 (322)
..+.|.+.|-+-.-|-. -+...+.++..++ .+..|+.=+=. ....+.+.+.+.++.++++|+
T Consensus 97 A~~~gv~~vria~~~te---------------ad~~~~~i~~ar~-~G~~v~~~lm~--s~~~~~e~l~~~a~~~~~~Ga 158 (337)
T PRK08195 97 AYDAGVRVVRVATHCTE---------------ADVSEQHIGLARE-LGMDTVGFLMM--SHMASPEKLAEQAKLMESYGA 158 (337)
T ss_pred HHHCCCCEEEEEEECCH---------------HHHHHHHHHHHHH-CCCEEEEEEHH--CCCCCHHHHHHHHHHHHHCCC
T ss_conf 99579897999863148---------------8779999999997-79939997511--024899999999999986599
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC----CCCCCCHHHHHHHHHCC---CCEE--EECC
Q ss_conf 01210013566402577421227661046787666738-8753025----77778998988874203---5234--4122
Q gi|254781167|r 149 NGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGL----NGGLEDMSQALKILPSV---DGVM--IGRA 218 (322)
Q Consensus 149 ~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~----NGdi~~~~~a~~~l~~~---dgvM--igRg 218 (322)
+.|++ .-..+.+.|. -=.+.+..+++.+ |++++.. |=+.-.+........|+ |+-. +|+|
T Consensus 159 d~I~l---~DT~G~~~P~-------~v~~~v~~l~~~l~~~i~igfH~HNnlGlAvANslaAveaGA~~ID~Ti~GlGeg 228 (337)
T PRK08195 159 QCVYV---VDSAGALLPD-------DVRARVRALRAALKPDTQVGFHGHHNLGLGVANSLAAVEAGADRIDASLAGFGAG 228 (337)
T ss_pred CEEEE---CCCCCCCCHH-------HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 99997---8987667999-------9999999999864998549998538867599999999980999998505344888
Q ss_pred CCCHHHH
Q ss_conf 0001243
Q gi|254781167|r 219 AYKNSAM 225 (322)
Q Consensus 219 a~~~P~i 225 (322)
+ ||.-+
T Consensus 229 A-GNa~l 234 (337)
T PRK08195 229 A-GNAPL 234 (337)
T ss_pred C-CCHHH
T ss_conf 7-87389
No 381
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=79.80 E-value=4.8 Score=20.16 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCCCHH
Q ss_conf 99999887531045377744256413677666889999855899999999985027906999861134566--5322014
Q gi|254781167|r 60 SKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQ--IPAVALR 137 (322)
Q Consensus 60 ~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~--~~~~~~~ 137 (322)
.-..+.++.+.+.++|.||+=+|- |+...+...+-.+-+=.+.+.++++=+++. .| .||+|=--+|. .+.++++
T Consensus 73 ra~~~D~~~a~~~~Vd~i~~~~G~-S~~~l~~~h~~~~~~al~~i~e~I~y~K~~--Gp-hv~VRFtaED~~R~d~~~L~ 148 (355)
T TIGR02146 73 RAVLDDIEVAVETEVDRIDVFFGV-SKLLLKYKHRKDLEEALEIIAEVIEYAKSH--GP-HVKVRFTAEDTFRSDLDDLL 148 (355)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHC--CC-EEEEEECCCCCCHHHHHHHH
T ss_conf 999999877642278657874300-588851025778899999999999999724--88-24788647888512189999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCC
Q ss_conf 5543200012201210013566402577421227661046787666738-87530
Q gi|254781167|r 138 NLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFI 191 (322)
Q Consensus 138 ~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i 191 (322)
..++.+.+.|+|.|.|= =| -+...|+ --|+.++.|+..+ |.+.|
T Consensus 149 ~v~k~a~~~~vDRVsiA-DT--vG~~~P~-------~~y~L~~~v~~~VGpg~~~ 193 (355)
T TIGR02146 149 KVYKTAKEAGVDRVSIA-DT--VGVATPR-------RVYELVRKVKRVVGPGVDI 193 (355)
T ss_pred HHHHHHHHCCCCEEEEE-CC--CCCCCCH-------HHHHHHHHHHHHCCCCCCE
T ss_conf 99999976188856751-34--3678806-------8999999998640887643
No 382
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=79.45 E-value=4.9 Score=20.08 Aligned_cols=95 Identities=16% Similarity=0.282 Sum_probs=55.9
Q ss_pred HHHHHHHHCCCC--EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 999999850279--069998611345665322014554320001220121001356640257742122766104678766
Q gi|254781167|r 105 GDCIAAMCKALS--IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEI 182 (322)
Q Consensus 105 ~~iv~~~~~~~~--~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l 182 (322)
.+.++.+++... .||.|-++ + + +-+..+.++|++.|-+ +++.. .-=-+.+..+
T Consensus 67 ~~~i~~~~~~~~~~~~I~VEv~-------t---l-~e~~~a~~~~~d~I~L-------------Dn~sp-e~l~~~v~~l 121 (169)
T pfam01729 67 TEAVRRAREVAPFAVKIEVEVE-------N---L-EELEEALEAGADIIML-------------DNFSP-EEVREAVEEL 121 (169)
T ss_pred HHHHHHHHHHCCCCCEEEEEEE-------H---H-HHHHHHHHCCCCEEEE-------------CCCCH-HHHHHHHHHH
T ss_conf 9999999996799970999960-------1---9-9899998469989997-------------79999-9999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH
Q ss_conf 6738875302577778998988874-203523441220001243
Q gi|254781167|r 183 KKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 183 ~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~i 225 (322)
++..+.+.+-+.|+|+ .+.+.++. +|+|.+-+|.-..+-||+
T Consensus 122 ~~~~~~v~iEaSGgI~-~~ni~~yA~tGvD~IS~galt~sa~~l 164 (169)
T pfam01729 122 DERAGRVLLEVSGGIT-LDNVLEYAKTGVDVISVGALTHSVPAL 164 (169)
T ss_pred HHHCCCEEEEECCCCC-HHHHHHHHHCCCCEEECCHHHCCCCCC
T ss_conf 9758967999618999-999999997699999858644699765
No 383
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=79.26 E-value=4.9 Score=20.07 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf 9998558999999999850279069998611345665322014554320001220121001356640257742-122766
Q gi|254781167|r 95 ACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKD-NRKIPN 173 (322)
Q Consensus 95 aaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~-~~~~~~ 173 (322)
+-+.++|+.+.+++..+.++ ..++++...++|+++|.|--- .-.++++.+ +.+.-+
T Consensus 171 ~~m~~~P~~~~~ll~kltd~---------------------~i~Yl~~qi~aGAdavqifDs--W~g~l~~~~~~~f~~~ 227 (352)
T COG0407 171 AMMYTEPDAVHALLDKLTDA---------------------VIEYLKAQIEAGADAVQIFDS--WAGVLSMIDYDEFVLP 227 (352)
T ss_pred HHHHHCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHCCCEEEEECC--CCCCCCCCCHHHHHHH
T ss_conf 99987989999999999999---------------------999999999818888986335--5556774257988456
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHCCCCEE
Q ss_conf 10467876667388753025777789-989888742035234
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLNGGLED-MSQALKILPSVDGVM 214 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~NGdi~~-~~~a~~~l~~~dgvM 214 (322)
..-.++..+++..+.+|++.++.=.+ .-+... ..|+|++=
T Consensus 228 ~~~~i~~~vk~~~~~~pii~f~~ga~~~l~~m~-~~g~d~l~ 268 (352)
T COG0407 228 YMKRIVREVKEVKGGVPVIHFCKGAGHLLEDMA-KTGFDVLG 268 (352)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHH-HCCCCEEE
T ss_conf 799999998872899868997788277899998-62886784
No 384
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=79.16 E-value=5 Score=20.02 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=101.5
Q ss_pred HHHHHHHHHH---CCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
Q ss_conf 7899999982---89829981----70332477608978983----0274578469998269989999988753104537
Q gi|254781167|r 7 RHYRFFARLL---TNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYN 75 (322)
Q Consensus 7 ~~fR~l~r~~---~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~ 75 (322)
-.||.+++.+ |.++++.. |+.+ |....+++++ +.....-|++..+ |.+..+..+-++..++.|+|
T Consensus 21 ~~~~~~i~~l~~~Gv~gi~v~GstGE~~~---Ls~eEr~~v~~~~~~~~~g~~~vi~g~-g~~t~~~i~la~~a~~~Gad 96 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAAGGTGEFFS---LTPDEYAQVVRAAVEETAGRVPVLAGA-GYGTATAIAYAQAAEKAGAD 96 (289)
T ss_pred HHHHHHHHHHHHCCCCEEEECCHHHCCCC---CCHHHHHHHHHHHHHHCCCCCEEEECC-CCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999779999997933006212---899999999999999818985174067-63199999999999975999
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 77442564136776668899998558999999999850279069998611345665322014554320001220121001
Q gi|254781167|r 76 EINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHA 155 (322)
Q Consensus 76 ~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~ 155 (322)
.|-+ -.|. -. -.+.+-+.+-.+++.+++++||-+=-|-|.+ ...+.+..+.+. |+
T Consensus 97 av~v--~pPy--~~--------~~~~~~l~~~~~~ia~a~~lpi~lYn~~~~~------~~~~~l~~L~~~-------~p 151 (289)
T cd00951 97 GILL--LPPY--LT--------EAPQEGLYAHVEAVCKSTDLGVIVYNRANAV------LTADSLARLAER-------CP 151 (289)
T ss_pred EEEE--CCCC--CC--------CCCHHHHHHHHHHHHHHCCCCEEECCCCCCC------CCHHHHHHHHHH-------CC
T ss_conf 9997--6988--88--------9999999999999998469986614887767------789999999983-------68
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHH-HCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 35664025774212276610467876667388753025777789989-88874-20352344122000124399999987
Q gi|254781167|r 156 RKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ-ALKIL-PSVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 156 Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~-a~~~l-~~~dgvMigRga~~~P~if~~I~~~l 233 (322)
+- .|. |+ .. -|++.+.++.+..++-..+.+| ..+.+. +...+ -|++|.+.|-+.+ -|-++.++-+.+
T Consensus 152 ~i---~gi--K~--s~--~d~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~G~~g~~~~~~n~-~Pe~~~~l~~a~ 220 (289)
T cd00951 152 NL---VGF--KD--GV--GDIELMRRIVAKLGDRLLYLGG-LPTAEVFALAYLAMGVPTYSSAVFNF-VPEIALAFYAAV 220 (289)
T ss_pred CE---EEE--EE--CC--CCHHHHHHHHHHCCCCCEEEEC-CCCCHHHHHHHHCCCCEEEEHHHHHH-HHHHHHHHHHHH
T ss_conf 78---999--97--88--8999999999975998289858-98337999999849984982675565-099999999999
Q ss_pred CCCC
Q ss_conf 1998
Q gi|254781167|r 234 SNPL 237 (322)
Q Consensus 234 ~~~~ 237 (322)
..+.
T Consensus 221 ~~gd 224 (289)
T cd00951 221 RAGD 224 (289)
T ss_pred HCCC
T ss_conf 8786
No 385
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.08 E-value=2 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 7789989888742-035234412
Q gi|254781167|r 196 GLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 196 di~~~~~a~~~l~-~~dgvMigR 217 (322)
.+.+.+++.+.+. |+|.||+=.
T Consensus 187 Ev~~l~ea~~a~~~gaDiI~LDn 209 (272)
T PRK05848 187 ECESLEEAKEAMNAGADIVMCDN 209 (272)
T ss_pred ECCCHHHHHHHHHCCCCEEEECC
T ss_conf 74999999999845999899589
No 386
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=78.41 E-value=2.6 Score=22.05 Aligned_cols=92 Identities=16% Similarity=0.352 Sum_probs=53.8
Q ss_pred HCCCCCCCEEEEEECCCHHHHHHHHH-------HHHCCCCC---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02745784699982699899999887-------53104537---774425641367766688999985589999999998
Q gi|254781167|r 42 GFSTQEKPLALQIGGADISKLVEAAK-------IVEDFGYN---EINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAM 111 (322)
Q Consensus 42 ~~~~~e~p~~~Ql~g~~p~~~~~aa~-------~~~~~g~~---~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~ 111 (322)
.+||.. -.+|.+.+|+....+.+ ++.-.|.+ .|+|++|+- +| ....-+...++..
T Consensus 109 s~HPgq---f~vL~S~~~~Vv~~si~dL~~Ha~~ld~mGl~~~~~i~IHigg~--------yg----dk~~a~~rf~~n~ 173 (316)
T PRK02308 109 SFHPDQ---FVVLNSPKPEVVENSIKDLEYHARLLDLMGIEDSSKINIHVGGA--------YG----DKEKALERFIENI 173 (316)
T ss_pred EECCCC---CEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC--------CC----CHHHHHHHHHHHH
T ss_conf 627976---23268998899999999999999999984799886289981476--------69----8789999999988
Q ss_pred HCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 5027906999861134566532201455432000122012
Q gi|254781167|r 112 CKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 112 ~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~i 151 (322)
. .+|-+||-||-+++++..-...+++...++.|+-.+
T Consensus 174 ~---~L~~~vr~RL~lENDDk~ysv~dll~i~~~~~iPiV 210 (316)
T PRK02308 174 K---KLPESIKKRLTLENDDKTYTVEELLSICEKLGIPVV 210 (316)
T ss_pred H---HCCHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 6---589967326899558860579999999873099879
No 387
>PRK13126 consensus
Probab=78.31 E-value=2.3 Score=22.43 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=79.2
Q ss_pred ECCCCCCHHHHCCCHHHHH--HCCCCCCCEEEEEECCCHHHH--HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8170332477608978983--027457846999826998999--998875310453777442564136776668899998
Q gi|254781167|r 23 YTEMIVADAILRGDKKNIL--GFSTQEKPLALQIGGADISKL--VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLM 98 (322)
Q Consensus 23 ~TEmi~a~~l~~~~~~~~~--~~~~~e~p~~~Ql~g~~p~~~--~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl 98 (322)
||.=+.+-..++....+-+ ..+..+.|+++--+-| |-.. .+-.+.+.+.|+|++=+ ---|.
T Consensus 42 FSDP~ADGPvIQ~A~~~Al~~G~~~~~~pivlM~Y~N-~~~~g~~~f~~~~~~aGvdGlIi-pDLP~------------- 106 (237)
T PRK13126 42 TPNPKYDGPYIRLAHREAEEPGWDAPKAPTYLMAYWE-DYAGSPAELFETAAEVGARGVLA-PDLLI------------- 106 (237)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCH-HHHHHHHHHHHHHHHCCCCEEEE-CCCCC-------------
T ss_conf 8887776899999999999859985687589997298-77656999999998749973883-68887-------------
Q ss_pred HHHHHHHHHHHHHHCCCCE-EEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHH--HHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 5589999999998502790-6999861134566532201455432000122012--100135664025774212276610
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSI-PVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGI--WIHARKAILKGLSPKDNRKIPNLD 175 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~-pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~i--tiH~Rt~~~~g~s~~~~~~~~~~~ 175 (322)
..|+...+.+...++. ++ +|..=. ..+..+.++.+.+..-..+ .+.|-|.. + .+..-
T Consensus 107 e~~ee~~~~~~~~~~~-gl~~I~lv~---------ptt~~~ri~~i~~~s~gfiYvs~~gvTG~------~----~~~~~ 166 (237)
T PRK13126 107 DFPGDLERYLELSREY-GLAPSFFIP---------SKFPHRLLRRLASLEPDFIYLGLYAATGI------E----LPVYV 166 (237)
T ss_pred CCCHHHHHHHHHHHHC-CCCEEEEEC---------CCCHHHHHHHHHHHCCCEEEEEEECCCCC------C----CHHHH
T ss_conf 7817789999999976-997799738---------99839999999985898799986526676------4----15679
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCC
Q ss_conf 467876667388753025777789989888742-035234412200
Q gi|254781167|r 176 YDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAY 220 (322)
Q Consensus 176 ~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~ 220 (322)
-+.+..+++..+++|+..--||.+.+++.+... ++|||-||-+..
T Consensus 167 ~~~i~~ir~~~~~~Pv~vGFGI~t~e~~~~~~~~~aDGvIVGSaiV 212 (237)
T PRK13126 167 ERNVKTIRGLAGDVYLVAGFAIDSPEKAARLVKAGADGVVVGTAFM 212 (237)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf 9999999985789977999453999999999864899999878999
No 388
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=78.04 E-value=5.3 Score=19.79 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=48.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+.|++.=|-+.++++....++-+.+-|++.|+|-+--|. ..+.++++++. .| +..+
T Consensus 11 ~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~------------------a~e~I~~l~~~--~p---~~lI 67 (211)
T COG0800 11 KAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA------------------ALEAIRALAKE--FP---EALI 67 (211)
T ss_pred HHCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCC------------------HHHHHHHHHHH--CC---CCEE
T ss_conf 8788448997089999999999999769876999647987------------------89999999986--74---6588
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 34566532201455432000122012
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~i 151 (322)
|-. +..+ .+-++.+.++|++.+
T Consensus 68 GAG---TVL~-~~q~~~a~~aGa~fi 89 (211)
T COG0800 68 GAG---TVLN-PEQARQAIAAGAQFI 89 (211)
T ss_pred CCC---CCCC-HHHHHHHHHCCCCEE
T ss_conf 245---5669-999999998599789
No 389
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=77.95 E-value=5.4 Score=19.77 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCC-CCEEEECCCCCHHH
Q ss_conf 1046787666738875302577778998988874-203-52344122000124
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSV-DGVMIGRAAYKNSA 224 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~-dgvMigRga~~~P~ 224 (322)
.||+.+.... ...+++.-||++ ++.+.+.+ .++ .||=+..|.-.+|-
T Consensus 143 fDW~~l~~~~---~~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG 191 (208)
T COG0135 143 FDWNLLPKLR---LSKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG 191 (208)
T ss_pred ECHHHCCCCC---CCCCEEEECCCC-HHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 7977705424---569879977889-899999998359837981553116899
No 390
>PRK09389 (R)-citramalate synthase; Provisional
Probab=77.67 E-value=5.5 Score=19.72 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=48.8
Q ss_pred EECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
Q ss_conf 82699899999887531045377744256413677666889999855899999999985027906999861134566532
Q gi|254781167|r 54 IGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPA 133 (322)
Q Consensus 54 l~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~ 133 (322)
-+.+||+.+.+.++.+.+.|++.|.| |- +| | ...|..+.++++.+++..++|+++-+- + +.
T Consensus 136 ~sr~~~~fl~e~~~~a~~aga~~i~l---~D--Tv-----G---~~~P~~~~~~i~~l~~~~~~~i~vH~H-----N-D~ 196 (487)
T PRK09389 136 ASRADLDFLKELYRAGIEAGADRICF---CD--TV-----G---ILTPERSYELFKRLSESLKIPISIHCH-----N-DF 196 (487)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCC---CC--CC-----C---CCCHHHHHHHHHHHCCCCCCEEEEEEC-----C-CC
T ss_conf 65557799999999999738996224---88--88-----8---879999999986300467854899705-----9-97
Q ss_pred CCHHHHHHHHCCCCCCHH
Q ss_conf 201455432000122012
Q gi|254781167|r 134 VALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 134 ~~~~~~~~~~~~~g~~~i 151 (322)
-....-.-....+|++.+
T Consensus 197 GlAvANslaAv~aGA~~V 214 (487)
T PRK09389 197 GLATANTLAALAAGADQC 214 (487)
T ss_pred CHHHHHHHHHHHHCCCEE
T ss_conf 779999999999502664
No 391
>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm.
Probab=77.61 E-value=1.2 Score=24.50 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 45543200012-201210013566402577421227661046787
Q gi|254781167|r 137 RNLVKSIKKSG-VNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180 (322)
Q Consensus 137 ~~~~~~~~~~g-~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~ 180 (322)
+..+=.++.+| +|.||||.|- +.|-+..-|...++
T Consensus 24 l~aalia~~~Gkad~ITvHLRe---------DrRHI~~~Dv~~L~ 59 (265)
T TIGR00559 24 LEAALIAEQAGKADGITVHLRE---------DRRHIQDRDVLKLK 59 (265)
T ss_pred HHHHHHHHHCCCCCEEEECCCC---------CCCCCCHHHHHHHH
T ss_conf 8999998762885522333888---------85458867899999
No 392
>PRK01362 putative translaldolase; Provisional
Probab=77.48 E-value=5.5 Score=19.68 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+.|+.+|++|.++++|.+-|+.+.+.+.+ +.+=.|. +..|. +.++.+.+ -+++|.+-. +
T Consensus 50 ~~~~is~ev~~~~~~~m~~qA~~l~~~~~n---v~VKIP~---t~~Gl------------~ai~~L~~-~Gi~vn~Ta-i 109 (214)
T PRK01362 50 VDGPVSAEVIALDAEGMIKEGRELAKIAPN---VVVKIPM---TTEGL------------KAVKALSK-EGIKTNVTL-C 109 (214)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCC---EEEECCC---CHHHH------------HHHHHHHH-CCCCEEEEE-C
T ss_conf 179757996364199999999999984877---6998189---66699------------99999998-499757664-5
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH---HC-CCCCCCCCCCCCCH
Q ss_conf 3456653220145543200012201210-0135664025774212276610467876667---38-87530257777899
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSPKDNRKIPNLDYDIVYEIKK---EN-PDLFIGLNGGLEDM 200 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~---~~-~~~~i~~NGdi~~~ 200 (322)
+ ...=+-.+..+|++.+.. -||... .|.. -++.+.++.+ .. .+..| .-..+++.
T Consensus 110 -~--------s~~Qa~~Aa~aga~yispy~gR~~d-~G~D----------g~~~i~~i~~~~~~~~~~tkI-L~AS~r~~ 168 (214)
T PRK01362 110 -F--------SANQALLAAKAGATYVSPFVGRLDD-IGTD----------GMELIEDIREIYDNYGFETEI-IAASVRHP 168 (214)
T ss_pred -C--------CHHHHHHHHHCCCCEEEEECCHHHH-CCCC----------HHHHHHHHHHHHHHCCCCCEE-EEEECCCH
T ss_conf -8--------8999999987599689863121865-5898----------289999999999963998137-52003889
Q ss_pred HHHHHHH-HCCCCEEEECC
Q ss_conf 8988874-20352344122
Q gi|254781167|r 201 SQALKIL-PSVDGVMIGRA 218 (322)
Q Consensus 201 ~~a~~~l-~~~dgvMigRg 218 (322)
+++.+.. .|||.|-+.-.
T Consensus 169 ~~i~~a~~~G~~~iTvp~~ 187 (214)
T PRK01362 169 MHVLEAALIGADIATIPYK 187 (214)
T ss_pred HHHHHHHHCCCCEEECCHH
T ss_conf 9999999869999983999
No 393
>PRK06852 aldolase; Validated
Probab=77.42 E-value=5.6 Score=19.67 Aligned_cols=129 Identities=14% Similarity=0.063 Sum_probs=71.9
Q ss_pred CCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE--EEEEECC-CCCCCCCCCHHHHHHHHCCC
Q ss_conf 45377--7442564136776668899998558999999999850279069--9986113-45665322014554320001
Q gi|254781167|r 72 FGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV--TVKCRIG-VDDQIPAVALRNLVKSIKKS 146 (322)
Q Consensus 72 ~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv--svK~RlG-~~~~~~~~~~~~~~~~~~~~ 146 (322)
+|+.. .-|+.|-+... +..+.+.++.+...+ .++|+ |+=-|=+ +.++.+....-..++...+-
T Consensus 133 LGa~aVG~TIY~GSe~e~-----------~ml~e~~~i~~eA~~-~Gl~~VlW~YpRG~~ik~e~d~~~iA~aA~~aaeL 200 (303)
T PRK06852 133 LNILGVGYTIYLGSEYEA-----------EMLSEAAQIIYEAHK-HGLVAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (303)
T ss_pred CCCEEEEEEEECCCHHHH-----------HHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 886599999857974069-----------999999999999997-69908999951587678987678999999999986
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHH------HCCCCEEEECCC
Q ss_conf 2201210013566402577421227661046787666738875302577778-998988874------203523441220
Q gi|254781167|r 147 GVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE-DMSQALKIL------PSVDGVMIGRAA 219 (322)
Q Consensus 147 g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~-~~~~a~~~l------~~~dgvMigRga 219 (322)
|++.|-+-.= +.+ +.-+.+.++++.+.-...+++..|+-. +.++.++.+ -|+.|+-+||-+
T Consensus 201 GADIIKvk~P---------~~~---~~~~~e~f~~~v~~aGr~~VI~SGG~~~~~~~~l~~v~~ai~~gG~~G~iiGRN~ 268 (303)
T PRK06852 201 GADFVKVNYP---------KKE---GANPAELFKEAVMAAGRTKVVCAGGSSTDAEEFLKQLYEQIHISGASGNATGRNI 268 (303)
T ss_pred CCCEEEECCC---------CCC---CCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 7998982487---------667---8999899999998089955997589989879999999999997299557443221
Q ss_pred CCHHH
Q ss_conf 00124
Q gi|254781167|r 220 YKNSA 224 (322)
Q Consensus 220 ~~~P~ 224 (322)
+.+|.
T Consensus 269 FQrp~ 273 (303)
T PRK06852 269 HQKPL 273 (303)
T ss_pred CCCCC
T ss_conf 36886
No 394
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=77.41 E-value=5.6 Score=19.67 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 5784699982699899999887531045377--74425641367766688999985589999999998502790699986
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.+.-++.-+.-++|.. ++++...|||. ||.-=|. -+.+.+..++.++...-..|+ +
T Consensus 10 g~~~~G~~~~~~sp~~----~Ei~a~~G~D~v~iD~EHg~---------------~~~~~~~~~~~a~~~~g~~~i---V 67 (249)
T TIGR03239 10 RETLIGCWSALGNPIT----TEVLGLAGFDWLLLDGEHAP---------------NDVLTFIPQLMALKGSASAPV---V 67 (249)
T ss_pred CCCEEEEEECCCCHHH----HHHHHCCCCCEEEEECCCCC---------------CCHHHHHHHHHHHHHCCCCCE---E
T ss_conf 9988998746899899----99997189699998104489---------------999999999999984699848---9
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHH------H---------HCCCC--CCCCCCCCCHHHHHHHHHHH
Q ss_conf 113456653220145543200012201210-013566------4---------02577--42122766104678766673
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAI------L---------KGLSP--KDNRKIPNLDYDIVYEIKKE 185 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~------~---------~g~s~--~~~~~~~~~~~~~i~~l~~~ 185 (322)
|+.+.+ ...++.+.++|++.|.| |-.|+- . .|.++ +..+|.... +++...
T Consensus 68 Rvp~~~-------~~~i~~~LD~Ga~GiivP~V~t~eea~~~v~a~kypP~G~Rg~~~~~r~~~yg~~~--~y~~~~--- 135 (249)
T TIGR03239 68 RPPWNE-------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVP--DYFATI--- 135 (249)
T ss_pred ECCCCC-------HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH--HHHHHH---
T ss_conf 799998-------78999997089987895174559999999997344999998887663211247706--999998---
Q ss_pred CCCCCCCCCCCCCCHH---HHHHHH--HCCCCEEEECCCC
Q ss_conf 8875302577778998---988874--2035234412200
Q gi|254781167|r 186 NPDLFIGLNGGLEDMS---QALKIL--PSVDGVMIGRAAY 220 (322)
Q Consensus 186 ~~~~~i~~NGdi~~~~---~a~~~l--~~~dgvMigRga~ 220 (322)
..++.++. -|.|.+ .+.+.+ +|+|+|+||..=+
T Consensus 136 n~~~~vi~--qIEt~~av~nldeI~av~GvD~ifiGP~DL 173 (249)
T TIGR03239 136 NDNITVLV--QIESQKGVDNVDEIAAVDGVDGIFVGPSDL 173 (249)
T ss_pred HHCCEEEE--EECCHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 64427899--965889998799996789988899884899
No 395
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=77.08 E-value=3.9 Score=20.81 Aligned_cols=186 Identities=18% Similarity=0.272 Sum_probs=99.2
Q ss_pred HHHCCCC-CCCEEEEE-------EC-CCHHHHHHHH-HHH----HCCCCCE---EEECCCCCH---HHHHHHHHHHHHH-
Q ss_conf 8302745-78469998-------26-9989999988-753----1045377---744256413---6776668899998-
Q gi|254781167|r 40 ILGFSTQ-EKPLALQI-------GG-ADISKLVEAA-KIV----EDFGYNE---INLNVGCPS---ARVHEGSFGACLM- 98 (322)
Q Consensus 40 ~~~~~~~-e~p~~~Ql-------~g-~~p~~~~~aa-~~~----~~~g~~~---idlN~GCP~---~~v~~~g~GaaLl- 98 (322)
.|.-+.+ -.|+++|. +| +|.+...+.+ .++ +.+.... +=|-=|--- -+..+.|+-|=|.
T Consensus 32 Il~AAee~~SPVI~q~SeGA~KY~GkGd~~~G~~~~~~mV~~L~E~~~~tVPVaLHLDHG~s~E~c~~AI~aGfsSVMID 111 (339)
T TIGR01859 32 ILQAAEEERSPVIVQVSEGAIKYMGKGDATLGYKVAVAMVKTLIESMSITVPVALHLDHGSSYESCIKAIKAGFSSVMID 111 (339)
T ss_pred HHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECC
T ss_conf 99999873687553120278740485317788999999999999867993206864688764899999996498167202
Q ss_pred -------HHHHHHHHHHHHHHCCCCEEEEEEEECC----CCCC-------CCCCCHHHHHHHHCCCCCCHH-----HHHH
Q ss_conf -------5589999999998502790699986113----4566-------532201455432000122012-----1001
Q gi|254781167|r 99 -------LNPDIVGDCIAAMCKALSIPVTVKCRIG----VDDQ-------IPAVALRNLVKSIKKSGVNGI-----WIHA 155 (322)
Q Consensus 99 -------~~p~~~~~iv~~~~~~~~~pvsvK~RlG----~~~~-------~~~~~~~~~~~~~~~~g~~~i-----tiH~ 155 (322)
.|-.+..++|+.... .+==|||=-=|| ..|. -...+..|--+.+++.|+|.| |+||
T Consensus 112 gShlP~EEN~~~Tkkvve~Ah~-~GDYvSVEaElG~~gG~ED~i~V~~~~~~ladp~Ea~~fV~eT~~D~LA~aIGt~HG 190 (339)
T TIGR01859 112 GSHLPFEENVALTKKVVEIAHA-KGDYVSVEAELGTIGGIEDGIVVVEKEGELADPDEAEQFVKETGVDYLAAAIGTSHG 190 (339)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEEEECEECCEECCEEEEECCCEECCHHHHHHHHHHCCCCEECCCCCCCCC
T ss_conf 4268788888888999999985-199799999843035276273787156367587999999976387754010035023
Q ss_pred HHHHHHCC-CCC--CC-CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-------CCCCEEEECCCCCHHH
Q ss_conf 35664025-774--21-2276610467876667388753025777789989888742-------0352344122000124
Q gi|254781167|r 156 RKAILKGL-SPK--DN-RKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-------SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 156 Rt~~~~g~-s~~--~~-~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-------~~dgvMigRga~~~P~ 224 (322)
|- .|+|. -+| +- .-=|++|++.+.++++..+-+|++.=|+=.=+++..+.+. +.-|| |
T Consensus 191 a~-kykgeqCtrnaDGvLiWp~LdF~~l~~I~~~~~G~PLVLHGaS~VP~e~v~~~~~~GG~L~ds~GI---------P- 259 (339)
T TIGR01859 191 AF-KYKGEQCTRNADGVLIWPGLDFERLKEIKELTNGIPLVLHGASSVPAEIVKEVEEYGGELKDSKGI---------P- 259 (339)
T ss_pred CC-CCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCC---------C-
T ss_conf 57-888665330467235488889789999987508976673576568588999999818767777768---------6-
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 39999998719988
Q gi|254781167|r 225 MLTTVDEYFSNPLT 238 (322)
Q Consensus 225 if~~I~~~l~~~~~ 238 (322)
..||++.+.-+--
T Consensus 260 -~e~ikkAi~lGia 272 (339)
T TIGR01859 260 -EEQIKKAIKLGIA 272 (339)
T ss_pred -HHHHHHHHHCCCC
T ss_conf -7899999972914
No 396
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=76.90 E-value=5.7 Score=19.57 Aligned_cols=117 Identities=10% Similarity=0.116 Sum_probs=69.8
Q ss_pred HHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47760897898302745784699982699899999887531045377744256413677666889999855899999999
Q gi|254781167|r 30 DAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIA 109 (322)
Q Consensus 30 ~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~ 109 (322)
..++|.+-.++++.. .++.+.+.|..|---.-.+.++.+.+.|++.|.+-+-=+.+.+...-.|.. ..-+++.+-++
T Consensus 73 EPllr~D~~ei~~~a-~~~G~~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~--G~f~~~~~~i~ 149 (375)
T PRK05301 73 EPLLRKDLEELVAHA-RRLGLYTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTR--GAFAQKLEVAR 149 (375)
T ss_pred CCCCCCCHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCC--CHHHHHHHHHH
T ss_conf 524566899999999-976975899606745579999999850998899956779877877763788--62999999999
Q ss_pred HHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH
Q ss_conf 98502790699986113456653220145543200012201210
Q gi|254781167|r 110 AMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 110 ~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti 153 (322)
.+++ .++||++.+=+- ..|...+.++++.+.+-|++.+.+
T Consensus 150 ~l~~-~Gi~v~i~~ti~---r~N~~~l~~i~~la~~lGv~~~~l 189 (375)
T PRK05301 150 LVKA-HGYPLTLNAVIH---RHNIDQIPRIIELAVELGADRLEL 189 (375)
T ss_pred HHHH-CCCCEEEEEEEC---CCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9997-498169998723---056888999999999729982898
No 397
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=76.24 E-value=6 Score=19.45 Aligned_cols=106 Identities=20% Similarity=0.224 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC-CHH-HHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 55899999999985027906999861134566532201455432000122-012-1001356640257742122766104
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV-NGI-WIHARKAILKGLSPKDNRKIPNLDY 176 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~-~~i-tiH~Rt~~~~g~s~~~~~~~~~~~~ 176 (322)
-|.+.+.+..+.+.+ .++|..+|+=. -+.+.+.+.+|++.+++.|+ +.| .+=|+-+-+.|
T Consensus 9 SD~~~m~~a~~~L~~-fgi~~e~~V~S---AHRTP~~~~~ya~~a~~~G~P~ViIAgAGgaAHLPG-------------- 70 (159)
T TIGR01162 9 SDLETMKKAAEILEE-FGIPYELRVVS---AHRTPELMFEYAKEAEERGIPKVIIAGAGGAAHLPG-------------- 70 (159)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEEEEC---CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--------------
T ss_conf 547899999999985-59966789860---677808899999999867899799840351133401--------------
Q ss_pred HHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHH---HC--CCCEEEECCCCCHHHHHH
Q ss_conf 67876667388753025----77778998988874---20--352344122000124399
Q gi|254781167|r 177 DIVYEIKKENPDLFIGL----NGGLEDMSQALKIL---PS--VDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 177 ~~i~~l~~~~~~~~i~~----NGdi~~~~~a~~~l---~~--~dgvMigRga~~~P~if~ 227 (322)
...+...+|||+ +-.....+...... .| |.-|-||++==.|=-+|+
T Consensus 71 -----mvAa~T~~PVIGVPv~~~~l~G~DSLlSiVQMP~GvPVATvaig~aGA~NAAllA 125 (159)
T TIGR01162 71 -----MVAALTTLPVIGVPVPSKALSGLDSLLSIVQMPAGVPVATVAIGNAGAKNAALLA 125 (159)
T ss_pred -----CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf -----0011478775503477342452135445430758974653003713278899999
No 398
>pfam07505 Gp37_Gp68 Phage protein Gp37/Gp68. Homologues of phage proteins Gp37 and Gp68 are found in several bacteria.
Probab=76.20 E-value=6 Score=19.44 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=60.9
Q ss_pred CC-EEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 84-69998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 48 KP-LALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 48 ~p-~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
+| +..||....|+-|.+...-....+++ |+-+||-+ .|-..+.+=+..+.+ +|..||.
T Consensus 109 ~p~h~fqiLTKR~~r~~~~~~~~~~~~~~--NVWlGvTV-------------EnQ~~ad~RI~~L~~---~pa~vrf--- 167 (253)
T pfam07505 109 TPRHTFQILTKRPTRMRKLAPSEAGIVPP--NVWLGVSV-------------ENQAEADRRIECLRR---VPAAVRF--- 167 (253)
T ss_pred CCCCEEEEEECCHHHHHHHCCHHHCCCCC--CEEEEEEE-------------ECHHHHHHHHHHHHH---CCCCEEE---
T ss_conf 88960999706788999746211067898--67973357-------------647677532799871---8721368---
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4566532201455432000122012100135664025774212276610467876667
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKK 184 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~ 184 (322)
-+.+-+++=+....-.|+++|+|=| .|+.. ..|.++++|..|.+
T Consensus 168 ----lS~EPLLgpid~~~l~~IdWVIvGG-------ESG~~---ARpm~~~Wvr~ird 211 (253)
T pfam07505 168 ----ISFEPLLGPVDGGTLTGIHWVIVGG-------ESGPG---ARPMDPEWVRDIRD 211 (253)
T ss_pred ----EEECCCCCCCCCCCCCCCCEEEECC-------CCCCC---CCCCCHHHHHHHHH
T ss_conf ----9844656777765568877798567-------34789---87789799999999
No 399
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=75.77 E-value=4.2 Score=20.59 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=43.8
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-HHCCCCE
Q ss_conf 014554320001220121001356640257742122766104678766673887530257777899898887-4203523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI-LPSVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~-l~~~dgv 213 (322)
....++-.++=-|-+++++-+= |+. ..|.+=|-|.-+|+..|.+++|.=|||++.|-|.+. +.|+|-+
T Consensus 141 ~A~~Y~LAA~Y~G~~~vYLEAG-------SGA----s~Pv~~e~i~~~k~~~~~I~LIVGGGIr~~EiA~~~v~aGAd~I 209 (212)
T TIGR01769 141 IAAAYALAAKYLGFKLVYLEAG-------SGA----SEPVSPETISLVKKKISSIPLIVGGGIRSPEIALKIVLAGADVI 209 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-------CCC----CCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCEE
T ss_conf 8999999998741351213105-------786----66786679999998548972775277588899999997089826
Q ss_pred E
Q ss_conf 4
Q gi|254781167|r 214 M 214 (322)
Q Consensus 214 M 214 (322)
-
T Consensus 210 V 210 (212)
T TIGR01769 210 V 210 (212)
T ss_pred E
T ss_conf 3
No 400
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=75.74 E-value=6.1 Score=19.35 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
++.++.-+=..|.-. --+++.-+.|+|.+-+=...|..+ +.+++++.++ .++-+-|-+ +|
T Consensus 56 ~~~IvAD~Kt~DaG~--~Ea~~a~~aGAD~vTVlg~A~~~T----------------I~~~~~~a~~-~g~~v~vDl-i~ 115 (220)
T PRK13305 56 DKIIVADWKVADAGE--TLAQQAFGAGANWMTIICAAPLAT----------------VEKGHAVAQS-CGGEIQIEL-FG 115 (220)
T ss_pred CCEEEEEEEECCCHH--HHHHHHHHCCCCEEEEECCCCHHH----------------HHHHHHHHHH-CCCEEEEEE-CC
T ss_conf 987998754526259--999999865998899956689799----------------9999999998-099899984-58
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHH-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 4566532201455432000122012100-135664025774212276610467876667388753025777789989888
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIH-ARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH-~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
... .+=++.+++.|++.+.+| +|-+-..| .. -+..+.+.++.+... ...+-.-|||+ .+++..
T Consensus 116 ------~~~-~~~ak~~~~lgv~~v~~H~g~D~q~~g---~~---~~~~~l~~~k~~~~~--~~~vaVAGGI~-~~~i~~ 179 (220)
T PRK13305 116 ------NWT-LDDARDWHRIGVRQAIYHRGRDAQASG---QQ---WGEADLARMKALSDI--GLELSITGGIT-PADLPL 179 (220)
T ss_pred ------CCC-HHHHHHHHHCCCCEEEEEECCCHHHCC---CC---CCHHHHHHHHHHHHC--CCEEEEECCCC-HHHHHH
T ss_conf ------998-789999998699889998333676518---98---631019999987606--96499988878-889999
Q ss_pred HHH-CCCCEEEECCCCCHHH
Q ss_conf 742-0352344122000124
Q gi|254781167|r 206 ILP-SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 206 ~l~-~~dgvMigRga~~~P~ 224 (322)
... +.|=|.+||++.+-+-
T Consensus 180 ~~~~~~~ivIvGraIt~A~d 199 (220)
T PRK13305 180 FKDIRVKAFIAGRALAGAAN 199 (220)
T ss_pred HHCCCCCEEEECHHHCCCCC
T ss_conf 97169989998936518999
No 401
>PRK00915 2-isopropylmalate synthase; Validated
Probab=75.56 E-value=6.2 Score=19.32 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHCCCCCCHHHH
Q ss_conf 220145543200012201210
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~iti 153 (322)
.+++.++++.+.++|++.|.+
T Consensus 148 ~~~l~~~~~aa~~aGa~~i~l 168 (511)
T PRK00915 148 LDFLCRVVEAAIDAGATTINI 168 (511)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
T ss_conf 899999999987649999864
No 402
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=75.27 E-value=5.5 Score=19.70 Aligned_cols=214 Identities=13% Similarity=0.169 Sum_probs=113.4
Q ss_pred CCCCCHHHHHHHHHH--CCCEEEECCCCCCHHHHCCC-HHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 778607899999982--89829981703324776089-789830274578469998269989999988753104537774
Q gi|254781167|r 2 VDWTDRHYRFFARLL--TNNALLYTEMIVADAILRGD-KKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 2 ag~Td~~fR~l~r~~--~~~~~~~TEmi~a~~l~~~~-~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
.||++..-|.|+++- ..++|.|-=||. .+. .++-..-- |=+.+ -..+.+.+.++.+.+.|...|-
T Consensus 2 ~~~~n~~iR~lv~Et~L~~~dLI~PiFV~-----eg~~~~~~I~sM----PGv~R---~sid~l~~~i~~~~~lGI~av~ 69 (320)
T cd04824 2 SGYAHPLLRQWQSERTLTKSNLIYPIFIT-----DNPDAKQPIDSL----PGINR---YGVNRLEEFLRPLVAKGLRSVI 69 (320)
T ss_pred CCCCCHHHHHHHHHCCCCHHHCEEEEEEE-----CCCCCCEECCCC----CCCCE---ECHHHHHHHHHHHHHCCCCEEE
T ss_conf 86478999999872798889966425992-----299983137999----99634---4899999999999987999799
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEEC---------C-------CCCCCCCCCHHHHHH
Q ss_conf 42564136776668899998558999999999850279-069998611---------3-------456653220145543
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRI---------G-------VDDQIPAVALRNLVK 141 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~Rl---------G-------~~~~~~~~~~~~~~~ 141 (322)
| +|.|.+.-.+...|+.-...-.++.+.++++++... +-|.+-+=| | .|++.+.+.+.+.+-
T Consensus 70 L-F~v~~~~~kkd~~gs~a~~~~~lv~rAIr~iK~~fpdl~vi~DVcLc~YT~hGHcGil~~~g~IdND~Tl~~L~k~Al 148 (320)
T cd04824 70 L-FGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVAL 148 (320)
T ss_pred E-ECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 7-166761006873445014865499999999998789849995410145668777775477981764899999999999
Q ss_pred HHCCCCCCHHH----HHHHHHH-HHCCCCCCCCC---CCCCHHHHHH------HHHHHCCCCCCCCCCC-------CCCH
Q ss_conf 20001220121----0013566-40257742122---7661046787------6667388753025777-------7899
Q gi|254781167|r 142 SIKKSGVNGIW----IHARKAI-LKGLSPKDNRK---IPNLDYDIVY------EIKKENPDLFIGLNGG-------LEDM 200 (322)
Q Consensus 142 ~~~~~g~~~it----iH~Rt~~-~~g~s~~~~~~---~~~~~~~~i~------~l~~~~~~~~i~~NGd-------i~~~ 200 (322)
...++|+|.|. .-||.+. .+.+.. +.+ ++-..|..-+ ....+...-|- -|| ..+.
T Consensus 149 ~~A~AGaDivAPSdMMDGrV~aIR~~LD~--~g~~~~v~ImSYsaKyaS~fYGPFRdA~~S~p~--~gdrktYQmd~~n~ 224 (320)
T cd04824 149 AYAKAGAHIVAPSDMMDGRVRAIKQALIQ--AGLGNKVSVMSYSAKFASCLYGPFRDAACSAPS--FGDRRCYQLPPGAR 224 (320)
T ss_pred HHHHCCCCEECCHHCCCCHHHHHHHHHHH--CCCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCC--CCCCCEEECCCCCH
T ss_conf 99970898334131134689999999998--789555631017777656302327888505645--78875420698857
Q ss_pred HHHHHH-----HHCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 898887-----420352344122000124399999987
Q gi|254781167|r 201 SQALKI-----LPSVDGVMIGRAAYKNSAMLTTVDEYF 233 (322)
Q Consensus 201 ~~a~~~-----l~~~dgvMigRga~~~P~if~~I~~~l 233 (322)
.+|.+. -+|+|=|||=-|. ..=-+.+++++.|
T Consensus 225 ~eAlre~~~D~~EGAD~lMVKPa~-~YLDiI~~~k~~~ 261 (320)
T cd04824 225 GLALRAVERDVSEGADMIMVKPGT-PYLDIVREAKDKH 261 (320)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCC-HHHHHHHHHHHHC
T ss_conf 899999864377399979952762-2899999999857
No 403
>PTZ00333 triosephosphate isomerase; Provisional
Probab=75.26 E-value=6.3 Score=19.27 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 875302577778998988874--2035234412200012439999998
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
.+++|.+ ||=.+.+.|.+.+ +++||++||++.+. |- |.+|-..
T Consensus 205 ~~i~ILY-GGSVn~~Na~~i~~~~~vDG~LVGgASL~-~~-F~~Ii~~ 249 (252)
T PTZ00333 205 KKVRIIY-GGSVNEKNCHELIKQPDIDGFLVGGASLK-PE-FVDIIKA 249 (252)
T ss_pred CCCCEEE-ECCCCHHHHHHHHCCCCCCEEEECHHHCC-HH-HHHHHHH
T ss_conf 6774887-27779999999966889997896005379-78-9999998
No 404
>PRK13753 dihydropteroate synthase; Provisional
Probab=75.26 E-value=6.3 Score=19.27 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 99899999887531045377744256413677666889-9998558999999999850279069998611
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFG-ACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~G-aaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+++...+-|..+.+.|+|.|||- |+- ++.|+- -.-=...+++.-+++++++... +|||-|+-
T Consensus 22 ~~~~~a~~~a~~mi~~GAdIIDIG-geS----TRPga~~vs~eeE~~Rv~pvi~~l~~~~~-~iSIDT~~ 85 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVG-PAA----SHPDARPVSPADEIRRIAPLLDALSDQMH-RVSIDSFQ 85 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC-CCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CEEEECCC
T ss_conf 899999999999998799699979-877----89999808999999999999999986089-67997885
No 405
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=75.25 E-value=3.1 Score=21.59 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=50.7
Q ss_pred EEEEEECCC-CCCCCCCCHHHHHHHHCCCCCCHH---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999861134-566532201455432000122012---1001356640257742122766104678766673887530257
Q gi|254781167|r 119 VTVKCRIGV-DDQIPAVALRNLVKSIKKSGVNGI---WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 119 vsvK~RlG~-~~~~~~~~~~~~~~~~~~~g~~~i---tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
||+=..=+. +.....+.|.++.+.+....++.| -||.== .+ .| .|.+.+..+.... +-||+.=
T Consensus 133 VSlDfK~~~L~~~~l~~~leevrd~l~~f~~~GlI~LdI~sVG-t~----------~G-~n~ell~~~l~l~-e~PV~~G 199 (230)
T TIGR00734 133 VSLDFKEKRLDASSLEESLEEVRDLLNSFDLDGLIVLDISSVG-TS----------KG-VNLELLKKVLELS-ERPVILG 199 (230)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCC-CC----------CC-CCHHHHHHHHHHH-CCCEEEC
T ss_conf 9984005520001304568888753066310137983363305-67----------78-7888999886442-4871406
Q ss_pred CCCCCHHHHHHHHH-CCCCEEEECCCCC
Q ss_conf 77789989888742-0352344122000
Q gi|254781167|r 195 GGLEDMSQALKILP-SVDGVMIGRAAYK 221 (322)
Q Consensus 195 Gdi~~~~~a~~~l~-~~dgvMigRga~~ 221 (322)
|||.-.|+-..+.+ ||+||+|||+...
T Consensus 200 GGi~g~EdlEl~~~mGv~avLvatA~Hk 227 (230)
T TIGR00734 200 GGIKGVEDLELLKEMGVSAVLVATAVHK 227 (230)
T ss_pred CCCCCCCHHHHHHHCCCCEEEEEEEECC
T ss_conf 8736751078888568765755321004
No 406
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.29 E-value=6.6 Score=19.10 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=51.9
Q ss_pred HHHCCCCCCHH-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 32000122012-----1001356640257742122766104678766673887530257777899898887420352344
Q gi|254781167|r 141 KSIKKSGVNGI-----WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMI 215 (322)
Q Consensus 141 ~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMi 215 (322)
+-+++.|+|.| |+||-. ++.+ +-.. ..++.+.+.++.+.+|++|++.-|+=..+++..+......|-|=
T Consensus 180 ~Fv~~TgvD~LAvaiGt~HG~Y---K~~~-~P~~--~~L~~~rL~eI~~~vp~~pLVLHGgS~vp~~~~~~~~~~gg~~~ 253 (347)
T PRK09196 180 DFVKKTQVDALAIAIGTSHGAY---KFTR-KPTG--DVLAIDRIKEIHARIPNTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred HHHHHHCCCCCHHHHCCCCCCC---CCCC-CCCC--CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 9999748770300110134666---5778-9972--20369999999984567867877896886789999987367665
Q ss_pred ECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 122000124399999987199888
Q gi|254781167|r 216 GRAAYKNSAMLTTVDEYFSNPLTG 239 (322)
Q Consensus 216 gRga~~~P~if~~I~~~l~~~~~~ 239 (322)
.+.|-| -.||++.+..+-..
T Consensus 254 --~~~G~~--~e~i~~ai~~Gv~K 273 (347)
T PRK09196 254 --ETYGVP--VEEIQEGIKHGVRK 273 (347)
T ss_pred --CCCCCC--HHHHHHHHHHCCEE
T ss_conf --446989--99999999809646
No 407
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=74.13 E-value=6.7 Score=19.07 Aligned_cols=187 Identities=18% Similarity=0.263 Sum_probs=106.3
Q ss_pred HHHHHHHH---HCCCEEEEC----CCCCCHHHHCCCHHHHH----HCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCE
Q ss_conf 89999998---289829981----70332477608978983----02745784699982699899999887531045377
Q gi|254781167|r 8 HYRFFARL---LTNNALLYT----EMIVADAILRGDKKNIL----GFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNE 76 (322)
Q Consensus 8 ~fR~l~r~---~~~~~~~~T----Emi~a~~l~~~~~~~~~----~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~ 76 (322)
.+|.+++. .|.++++.. |+.+ |....+++++ +.....-|+++++.+.+..+..+.++.+++.|+|.
T Consensus 23 ~~~~~i~~l~~~Gv~gi~v~GstGE~~~---Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~st~~~i~~a~~A~~~Gad~ 99 (289)
T pfam00701 23 ALRKLIEFLINKGADGLFVGGTTGESFT---LSTEEHEQLIEITVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAGADG 99 (289)
T ss_pred HHHHHHHHHHHCCCCEEEECEECCCCCC---CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999779999997836403113---8899999999999998199862863788878999999999999749997
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCCCCCCCCHHHHHHHHCCCCCCHH-H
Q ss_conf 74425641367766688999985589999999998502790699986---1134566532201455432000122012-1
Q gi|254781167|r 77 INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC---RIGVDDQIPAVALRNLVKSIKKSGVNGI-W 152 (322)
Q Consensus 77 idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~---RlG~~~~~~~~~~~~~~~~~~~~g~~~i-t 152 (322)
|=+- -|.-. -.+++-+.+-.+++.+++++||.+=- +.|.+ ...+++..+.+. ..| .
T Consensus 100 i~v~--pP~y~----------~~~~~~i~~~~~~va~a~~lPi~iYn~P~~tg~~------l~~~~l~~L~~~--~~i~g 159 (289)
T pfam00701 100 VLAV--TPYYN----------KPSQEGLYQHFKAIAAATDLPVILYNVPSRTGQD------LTPETIERLAEC--PNVVG 159 (289)
T ss_pred EEEC--CCCCC----------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC------CCHHHHHHHHCC--CCEEE
T ss_conf 8877--99888----------9999999999999983159977997156540336------799999998268--99899
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 0013566402577421227661046787666738-8753025777789989888-7420352344122000124399999
Q gi|254781167|r 153 IHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGLNGGLEDMSQALK-ILPSVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 153 iH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~NGdi~~~~~a~~-~l~~~dgvMigRga~~~P~if~~I~ 230 (322)
| |+ .. .|...+.++.+.. +++.+ .+|. + ..... +.-|++|.+.|-+.+ -|..+.++-
T Consensus 160 i------------K~--ss--~~~~~~~~~~~~~~~~~~v-~~G~--d-~~~~~~l~~Ga~G~i~~~~n~-~P~~~~~i~ 218 (289)
T pfam00701 160 V------------KD--AV--GDLERMENIRKRAGPDFTI-LSGD--D-ETALSYLSLGADGVISVTSNI-APKLMRDIY 218 (289)
T ss_pred E------------EE--CC--CCHHHHHHHHHHCCCCCEE-ECCC--H-HHHHHHHHCCCCEEEEEHHHH-CHHHHHHHH
T ss_conf 9------------96--99--8999999999966998245-0694--8-999999866898799841540-599999999
Q ss_pred HHHCCCCC
Q ss_conf 98719988
Q gi|254781167|r 231 EYFSNPLT 238 (322)
Q Consensus 231 ~~l~~~~~ 238 (322)
+.+..+..
T Consensus 219 ~~~~~gd~ 226 (289)
T pfam00701 219 RALKNGDF 226 (289)
T ss_pred HHHHCCCH
T ss_conf 99987799
No 408
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways . This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown. PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=74.05 E-value=3.7 Score=20.96 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=84.3
Q ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCCHHHHHHHHC
Q ss_conf 875310453777442564136776668899998558999999999850279-0699986113456653220145543200
Q gi|254781167|r 66 AKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVALRNLVKSIK 144 (322)
Q Consensus 66 a~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~~~~~~~~~~ 144 (322)
|++++..||+.| .--|=.+. +..|.==+==-....+.++|+.|.++++ +||=|=-=.||.+ ..+...++++++
T Consensus 23 ArIa~~aGFkal-WaSGLs~S--~~lGvRDsnEASWt~lv~vve~~sDavdGvPvLvDgDtGyGN---FNnARr~arkle 96 (272)
T TIGR02320 23 ARIAEEAGFKAL-WASGLSVS--AALGVRDSNEASWTQLVEVVETMSDAVDGVPVLVDGDTGYGN---FNNARRLARKLE 96 (272)
T ss_pred HHHHHHCCCCEE-HHHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC---HHHHHHHHHHHH
T ss_conf 899987052000-34367786--414785320320899999986431258880168537879871---467999999997
Q ss_pred CCCCCHHHH----HHHHHHHHCCCCCCCCCCCCCHH-HHH---HHHHHHCCCCCCCCCCCC------CCHHHHHH----H
Q ss_conf 012201210----01356640257742122766104-678---766673887530257777------89989888----7
Q gi|254781167|r 145 KSGVNGIWI----HARKAILKGLSPKDNRKIPNLDY-DIV---YEIKKENPDLFIGLNGGL------EDMSQALK----I 206 (322)
Q Consensus 145 ~~g~~~iti----H~Rt~~~~g~s~~~~~~~~~~~~-~~i---~~l~~~~~~~~i~~NGdi------~~~~~a~~----~ 206 (322)
+.|+..+++ -|.+ .|=-.+|.-|-||- |+. +++|...+|+-|+..-=| .-.++|++ +
T Consensus 97 ~~GaaG~ClEDk~FPK~-----NSf~gdrahpLAdi~EFcgkikAcKD~~~DpdFv~VAR~EAlIag~g~dEAL~RA~AY 171 (272)
T TIGR02320 97 DRGAAGVCLEDKVFPKM-----NSFFGDRAHPLADIEEFCGKIKACKDAQRDPDFVVVARVEALIAGLGLDEALKRAEAY 171 (272)
T ss_pred HCCCCEEEECCCCCCCC-----CCCCCCCCCCCCCHHHHHCCHHEEECCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 46863222035557641-----3342788887888154404100200678997536623047764389866899999998
Q ss_pred HH-CCCCEEEECCCCCHHH
Q ss_conf 42-0352344122000124
Q gi|254781167|r 207 LP-SVDGVMIGRAAYKNSA 224 (322)
Q Consensus 207 l~-~~dgvMigRga~~~P~ 224 (322)
.+ |+|.++|=- =..||-
T Consensus 172 aeAGADAiliHS-rk~~p~ 189 (272)
T TIGR02320 172 AEAGADAILIHS-RKADPE 189 (272)
T ss_pred HHHCHHHHHHHH-CCCCHH
T ss_conf 851312455631-348887
No 409
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=74.00 E-value=4.8 Score=20.12 Aligned_cols=125 Identities=23% Similarity=0.327 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EEEEECCCC------
Q ss_conf 998999998875310453777-442564136776668899998558999999999850279069-998611345------
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEI-NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV-TVKCRIGVD------ 128 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~i-dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv-svK~RlG~~------ 128 (322)
+|.++=.+-+++...+|.|.| ||-.|=- +.++=+.+.+++++|| ||-+==-+.
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLStGgd-------------------l~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~ 135 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLSTGGD-------------------LHEIREWIIRNSPVPVGTVPIYQALEEVNGKV 135 (432)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCC-------------------HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCH
T ss_conf 88899999999999848650675355666-------------------89999999856899867730899999960305
Q ss_pred CCCCCCCHHHHHHHHCCCCCCHHHHHHH--------HHH----H----HC---------CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6653220145543200012201210013--------566----4----02---------577421227661046787666
Q gi|254781167|r 129 DQIPAVALRNLVKSIKKSGVNGIWIHAR--------KAI----L----KG---------LSPKDNRKIPNLDYDIVYEIK 183 (322)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~itiH~R--------t~~----~----~g---------~s~~~~~~~~~~~~~~i~~l~ 183 (322)
.+-+.+.+.+.+..-.+.|++..|||+- +.. . .| .-.++|-+- .+|+++-++.
T Consensus 136 ~d~t~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~Rv~giVSRGGsi~a~Wml~n~~ENply--~~fd~lleI~ 213 (432)
T COG0422 136 EDLTEDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLY--EHFDELLEIF 213 (432)
T ss_pred HHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
T ss_conf 51889999999999997087579843103699999987348653044265399999999758858256--6099999999
Q ss_pred HHCCCCCCC-CC----CCCCCHHHH
Q ss_conf 738875302-57----777899898
Q gi|254781167|r 184 KENPDLFIG-LN----GGLEDMSQA 203 (322)
Q Consensus 184 ~~~~~~~i~-~N----Gdi~~~~~a 203 (322)
+.. ++.+- ++ |.|.++.|+
T Consensus 214 k~y-DvtlSLGDglRPG~i~DA~D~ 237 (432)
T COG0422 214 KEY-DVTLSLGDGLRPGCIADANDE 237 (432)
T ss_pred HHH-CEEEECCCCCCCCCCCCCCCH
T ss_conf 984-846642577788864677638
No 410
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=72.91 E-value=7.1 Score=18.87 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
+.|+.+|++|.+++.|.+-|+.+.+.+-+ +.+==|. +.. | .+.++.+.+ -++++.+-.=
T Consensus 51 ~~~ls~qv~~~~~~~m~~~a~~l~~~~~n---i~vKIP~---t~~--g----------l~ai~~L~~-~gi~~n~Tav-- 109 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGN---VVVKIPV---TED--G----------LKAIKKLSE-EGIKTNVTAI-- 109 (211)
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHCCC---EEEEECC---CHH--H----------HHHHHHHHH-CCCCEEEEEE--
T ss_conf 99889999738799999999999973895---7999268---565--9----------999999998-5997677750--
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH---HC-CCCCCCCCCCCCCHH
Q ss_conf 456653220145543200012201210-0135664025774212276610467876667---38-875302577778998
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSPKDNRKIPNLDYDIVYEIKK---EN-PDLFIGLNGGLEDMS 201 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~---~~-~~~~i~~NGdi~~~~ 201 (322)
+ ...=+-.+.++|++.+.+ =||.. ..|.+ -++.+.++.+ .. .+..| .-+.+++.+
T Consensus 110 ~--------s~~Qa~~Aa~aga~yvspf~GRi~-d~G~d----------~~~~i~~~~~~~~~~~~~tki-L~AS~R~~~ 169 (211)
T cd00956 110 F--------SAAQALLAAKAGATYVSPFVGRID-DLGGD----------GMELIREIRTIFDNYGFDTKI-LAASIRNPQ 169 (211)
T ss_pred C--------CHHHHHHHHHCCCCEEEEECCCHH-HCCCC----------HHHHHHHHHHHHHHCCCCEEE-EEEECCCHH
T ss_conf 6--------899999999879978863034075-45898----------599999999999982998268-852048899
Q ss_pred HHHHHH-HCCCCEEEEC
Q ss_conf 988874-2035234412
Q gi|254781167|r 202 QALKIL-PSVDGVMIGR 217 (322)
Q Consensus 202 ~a~~~l-~~~dgvMigR 217 (322)
++.+.. .|||.+-|.-
T Consensus 170 ~v~~a~~~G~d~iTip~ 186 (211)
T cd00956 170 HVIEAALAGADAITLPP 186 (211)
T ss_pred HHHHHHHCCCCEEECCH
T ss_conf 99999986999998499
No 411
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=72.47 E-value=7.3 Score=18.80 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=68.9
Q ss_pred HHHHHHHHHC-CC--CCEEEECCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9998875310-45--37774425641367766----68899998558999999999850279069998611345665322
Q gi|254781167|r 62 LVEAAKIVED-FG--YNEINLNVGCPSARVHE----GSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 62 ~~~aa~~~~~-~g--~~~idlN~GCP~~~v~~----~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~ 134 (322)
..+|++.+.+ .+ ...| -.+|+|.-...- ...-..+.++|+.+.++++.+.+
T Consensus 111 ~~eai~~l~~~~~~~~pli-g~~ggP~Tla~~l~g~~~~~~~l~~~p~~~~~ll~~~t~--------------------- 168 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVI-GAVGGPFTLASLLMGASKFLMLLYTDPELVHKLLEKCTE--------------------- 168 (330)
T ss_pred HHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHH---------------------
T ss_conf 9999999999728987479-755657999887318489999999799999999999999---------------------
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 014554320001220121001356640257742-1227661046787666738875302577778998988874203523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKD-NRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~-~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgv 213 (322)
.+.++++...++|++.|.+--=.+...-+|+.. +.|+.|..-+.+..+++....+.+...|+....-+... -.++|++
T Consensus 169 ~~~~~~~~qi~aGad~i~i~d~~a~~~~ls~~~f~~f~~p~~k~i~~~~~~~~~~~ilh~~g~~~~~l~~~~-~~~~~~~ 247 (330)
T cd03465 169 FIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMA-DLGADVF 247 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH-HCCCCEE
T ss_conf 999999999963998899835666655699999999989999999999775499836740786287999998-6588889
Q ss_pred EEECCCCCHHHHHHHHHHHHC
Q ss_conf 441220001243999999871
Q gi|254781167|r 214 MIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 214 MigRga~~~P~if~~I~~~l~ 234 (322)
-+.-.. | +.+.+..+.
T Consensus 248 ~~d~~~--~---l~~~~~~~~ 263 (330)
T cd03465 248 SIDVTV--D---LAEAKKKVG 263 (330)
T ss_pred EECCCC--C---HHHHHHHHC
T ss_conf 858889--9---999999809
No 412
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=72.32 E-value=7.3 Score=18.78 Aligned_cols=139 Identities=18% Similarity=0.234 Sum_probs=70.2
Q ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 53104537774425641367766688999985589999999998502790699986113456653220145543200012
Q gi|254781167|r 68 IVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSG 147 (322)
Q Consensus 68 ~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g 147 (322)
...+.|.+.|-+...|.-. +...+.++..++ .+..+..=+-.. ...+.+.+.+.++.++++|
T Consensus 95 ~a~~~gv~~vri~~~~te~---------------d~~~~~i~~ak~-~G~~v~~~~~~s--~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEA---------------DVSEQHIGMARE-LGMDTVGFLMMS--HMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred HHHHCCCCEEEEEECCCHH---------------HHHHHHHHHHHH-CCCEEEEEEEEC--CCCCHHHHHHHHHHHHHCC
T ss_conf 9996699978986316678---------------889999999997-698099997505--6899999999999998569
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC----CCCCCCHHHHHHHHHCC---CCEE--EEC
Q ss_conf 201210013566402577421227661046787666738-8753025----77778998988874203---5234--412
Q gi|254781167|r 148 VNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKEN-PDLFIGL----NGGLEDMSQALKILPSV---DGVM--IGR 217 (322)
Q Consensus 148 ~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~-~~~~i~~----NGdi~~~~~a~~~l~~~---dgvM--igR 217 (322)
++.|++ .-..+++.|. -=.+.+..+++.+ |++++.. |-+.-.+........|+ |+-+ +|+
T Consensus 157 ad~I~i---~DT~G~~~P~-------~v~~~v~~l~~~~~~~i~ig~H~HNnlGlAvANslaAi~aGa~~VD~Ti~GlGe 226 (333)
T TIGR03217 157 ADCVYI---VDSAGAMLPD-------DVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA 226 (333)
T ss_pred CCEEEE---CCCCCCCCHH-------HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999997---5964468999-------999999999986299754889861787729999999998199999762744889
Q ss_pred CCCCHHHHHHHHHHHHCCC
Q ss_conf 2000124399999987199
Q gi|254781167|r 218 AAYKNSAMLTTVDEYFSNP 236 (322)
Q Consensus 218 ga~~~P~if~~I~~~l~~~ 236 (322)
++ ||+-+ ..+-..+...
T Consensus 227 ~a-GNa~l-E~lVa~l~~~ 243 (333)
T TIGR03217 227 GA-GNAPL-EVFVAVLDRL 243 (333)
T ss_pred CC-CCCHH-HHHHHHHHCC
T ss_conf 88-87349-9999999617
No 413
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=72.17 E-value=7.4 Score=18.75 Aligned_cols=58 Identities=17% Similarity=0.325 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHH-HCCCCEEEECCCCCHHHHH--HHHHHHHC
Q ss_conf 10467876667388753025777789--98988874-2035234412200012439--99999871
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLNGGLED--MSQALKIL-PSVDGVMIGRAAYKNSAML--TTVDEYFS 234 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~NGdi~~--~~~a~~~l-~~~dgvMigRga~~~P~if--~~I~~~l~ 234 (322)
.||+.+.... ...|++..|+|+. .++|.+.. ..+-||=+..|+-..|-+= ..+++++.
T Consensus 153 FDW~lL~~~~---~~~Pf~LAGGLnpdNV~eAi~~~~P~~~GVDVSSGVEssPG~KD~~k~k~Fi~ 215 (611)
T PRK13803 153 YDLNQRFNYT---GKFRYFLSGGLSPTNVDRAIQLTKPQEVGVDVSSGVEDSNGNKKLTLIQSFIT 215 (611)
T ss_pred CCHHHHHHCC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 5878786178---99998997489768799999725998775568777708897331999999987
No 414
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=71.69 E-value=3.1 Score=21.57 Aligned_cols=90 Identities=10% Similarity=0.123 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCC
Q ss_conf 99899999887531045377744256413677666889999855899999999985027-90699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~ 135 (322)
-.|+++++.|.-+.+.|+..+-+-.==| ..|.. -.|+++..++++++++.+ ++.|-+-+-- .... +.+
T Consensus 23 ~Tp~Eia~~A~~c~~AGAsivH~HvRd~-----~dG~~---s~d~~~y~e~i~~Ir~~~pd~ii~~Ttg~-~~~~-~~e- 91 (274)
T pfam05853 23 VTPEEIAEEAVAAAEAGAAIVHLHVRDP-----EDGRP---SQDPELFREVLERIREAVPDVIINLTTGG-SPGM-TVE- 91 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCCC---CCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCCC-CHH-
T ss_conf 9989999999999970873899884478-----88990---68899999999999987899689945787-7889-888-
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 145543200012201210013566
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAI 159 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~ 159 (322)
+-...+.....++.++..++-.
T Consensus 92 --eR~~~v~~~~Pd~aSl~~gs~n 113 (274)
T pfam05853 92 --ERLAPVEALRPEMASLNMGSMN 113 (274)
T ss_pred --HHHHHHHHCCCCEEEECCCCCC
T ss_conf --9999998609885774466643
No 415
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=71.66 E-value=2.7 Score=22.03 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCCCHHHH---HHHHHCCCCEEEECCCCCHHH
Q ss_conf 87530257777899898---887420352344122000124
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQA---LKILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a---~~~l~~~dgvMigRga~~~P~ 224 (322)
+++.|++ =|.+.+-. .+.++.+|||||+||=++-=.
T Consensus 216 ~~~~IIa--KIE~~~al~Nl~eIi~~sDgImIARGDLg~ei 254 (348)
T pfam00224 216 KDIKIIA--KIENQEGVNNFDEILEASDGIMVARGDLGIEI 254 (348)
T ss_pred CCCEEEE--EECCHHHHHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 8760599--84478988678889985888998447644558
No 416
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=71.55 E-value=7.6 Score=18.66 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=85.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 57846999826998999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
.+++++.-+=..|.-.+ -++++.+.|.|.+-+=+--| .+-+.++++..++ .++-+-+-+
T Consensus 55 pd~~IvAD~Kt~D~G~~--e~~ma~~aGAd~~tV~g~A~----------------~~TI~~~i~~A~~-~~~~v~iDl-- 113 (217)
T COG0269 55 PDKIIVADLKTADAGAI--EARMAFEAGADWVTVLGAAD----------------DATIKKAIKVAKE-YGKEVQIDL-- 113 (217)
T ss_pred CCCEEEEEEEECCHHHH--HHHHHHHCCCCEEEEEECCC----------------HHHHHHHHHHHHH-CCCEEEEEE--
T ss_conf 99868862032240489--99999973898799980488----------------8999999999998-398699985--
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHHHHCCC-CCCCCCCCCCCHHHH
Q ss_conf 3456653220145543200012201210013566402577421227661-04678766673887-530257777899898
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNL-DYDIVYEIKKENPD-LFIGLNGGLEDMSQA 203 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~-~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a 203 (322)
.++.++.+-++.+.+.|++.+.+|--. +..-.|.- -|+.+..+|+..+. ..+-.-||| +++++
T Consensus 114 -----~~~~~~~~~~~~l~~~gvd~~~~H~g~---------D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i 178 (217)
T COG0269 114 -----IGVWDPEQRAKWLKELGVDQVILHRGR---------DAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDI 178 (217)
T ss_pred -----ECCCCHHHHHHHHHHHCCCEEEEEECC---------CHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCC-CHHHH
T ss_conf -----168999999999997189789997043---------476508994177899999862368359986687-88788
Q ss_pred HHHH-HCCCCEEEECCCCCHHH
Q ss_conf 8874-20352344122000124
Q gi|254781167|r 204 LKIL-PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 204 ~~~l-~~~dgvMigRga~~~P~ 224 (322)
.... .+.+-|-+||++-+..-
T Consensus 179 ~~~~~~~~~ivIvGraIt~a~d 200 (217)
T COG0269 179 PLFKGIGADIVIVGRAITGAKD 200 (217)
T ss_pred HHHHCCCCCEEEECCHHCCCCC
T ss_conf 9986489979998822148999
No 417
>PRK06739 pyruvate kinase; Validated
Probab=71.25 E-value=2.8 Score=21.83 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=14.6
Q ss_pred HHHCCCCEEEECCCCCHHH
Q ss_conf 7420352344122000124
Q gi|254781167|r 206 ILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 206 ~l~~~dgvMigRga~~~P~ 224 (322)
.++..|||||+||=++-=.
T Consensus 226 Ii~~sDgIMIARGDLgvei 244 (352)
T PRK06739 226 ICKEADGIMIARGDLGVEL 244 (352)
T ss_pred HHHHCCEEEEECCCCCCCC
T ss_conf 9985594699658644636
No 418
>PRK09206 pyruvate kinase; Provisional
Probab=70.89 E-value=2.8 Score=21.87 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.0
Q ss_pred HHHCCCCEEEECCCCCH
Q ss_conf 74203523441220001
Q gi|254781167|r 206 ILPSVDGVMIGRAAYKN 222 (322)
Q Consensus 206 ~l~~~dgvMigRga~~~ 222 (322)
.++-.|||||+||=++-
T Consensus 233 Ii~~sDgIMIARGDLgv 249 (470)
T PRK09206 233 ILEASDGIMVARGDLGV 249 (470)
T ss_pred HHHHCCEEEEECCCCCC
T ss_conf 99867799993586533
No 419
>PTZ00300 pyruvate kinase; Provisional
Probab=70.52 E-value=2.8 Score=21.87 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=8.4
Q ss_pred HHCCCCEEEECCCCCH
Q ss_conf 4203523441220001
Q gi|254781167|r 207 LPSVDGVMIGRAAYKN 222 (322)
Q Consensus 207 l~~~dgvMigRga~~~ 222 (322)
++..|||||+||=++-
T Consensus 208 i~~sDgIMVARGDLgv 223 (454)
T PTZ00300 208 IEESDGIMVARGDLGV 223 (454)
T ss_pred HHHCCEEEEECCCCCC
T ss_conf 9858799994574303
No 420
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=70.25 E-value=8.1 Score=18.46 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
+++++.-+=-.|.-.. -++++-+.|+|.+-+-...| .+-+.+++++.++ .+..|-|-+ ++
T Consensus 56 ~k~I~aDlK~~D~g~~--ea~~a~~aGAd~vtV~g~a~----------------~~Ti~~~~~~A~~-~g~~v~vdl-~~ 115 (216)
T PRK13306 56 DKIIVADTKIADAGKI--LAKMAFEAGADWVTVICAAH----------------IPTIKAALKVAKE-FNGEIQIEL-YG 115 (216)
T ss_pred CCEEEEEEEECCCCHH--HHHHHHHCCCCEEEEECCCC----------------HHHHHHHHHHHHH-HCCEEEEEE-EC
T ss_conf 9979997532365389--99999972898899956689----------------7999999999998-098369997-37
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHH-HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 45665322014554320001220121001-35664025774212276610467876667388753025777789989888
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKSGVNGIWIHA-RKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~itiH~-Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
. ...+.++.+.+.|++.+.+|- |-+ +.++.. .++-+.+.++++... ...+..-||| +.+++..
T Consensus 116 ------~-~~~e~a~~~~~lgv~~~i~H~~~D~---~~~g~~---~~~~~~~~ik~l~~~--~~~vaVaGGI-~~~~~~~ 179 (216)
T PRK13306 116 ------N-WTWEQAQQWRDAGIQQVIYHRSRDA---ELAGVA---WGEKDLNKVKKLSDM--GFKVSVTGGI-VPEDLKL 179 (216)
T ss_pred ------C-CCHHHHHHHHHCCCCEEEEECCHHH---HHCCCC---CCHHHHHHHHHHHCC--CCEEEECCCC-CHHHHHH
T ss_conf ------8-7788899999769987887603224---424678---887789999997636--9829985998-9899999
Q ss_pred HHH-CCCCEEEECCCCCHH
Q ss_conf 742-035234412200012
Q gi|254781167|r 206 ILP-SVDGVMIGRAAYKNS 223 (322)
Q Consensus 206 ~l~-~~dgvMigRga~~~P 223 (322)
... +.|-|.+||++.+..
T Consensus 180 ~~~~~~~ivIVGraIt~a~ 198 (216)
T PRK13306 180 FKGIPIKTFIAGRAIRGAK 198 (216)
T ss_pred HHCCCCCEEEECCCCCCCC
T ss_conf 8627998999885235899
No 421
>PRK06354 pyruvate kinase; Provisional
Probab=70.13 E-value=3.1 Score=21.54 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCHHHH---HHHHHCCCCEEEECCCCCH
Q ss_conf 87530257777899898---8874203523441220001
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQA---LKILPSVDGVMIGRAAYKN 222 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a---~~~l~~~dgvMigRga~~~ 222 (322)
.+++|+. -|.+.+-. .+.++-+|||||+||=++-
T Consensus 218 ~~~~IIA--KIE~~eav~NldeIi~~sDgIMVARGDLGv 254 (589)
T PRK06354 218 KSIPVIA--KIEKQEAIDNIDAILELCDGVMVARGDLGV 254 (589)
T ss_pred CCCEEEE--EECCHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 8634999--745799998699998747699995486320
No 422
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=69.77 E-value=8.3 Score=18.39 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHCCCEEEEC---CCCCCHHHHCCCHH-------HHHHC-----CCCCCC-EEEEE-EC---CCHHHH-
Q ss_conf 860789999998289829981---70332477608978-------98302-----745784-69998-26---998999-
Q gi|254781167|r 4 WTDRHYRFFARLLTNNALLYT---EMIVADAILRGDKK-------NILGF-----STQEKP-LALQI-GG---ADISKL- 62 (322)
Q Consensus 4 ~Td~~fR~l~r~~~~~~~~~T---Emi~a~~l~~~~~~-------~~~~~-----~~~e~p-~~~Ql-~g---~~p~~~- 62 (322)
.-|.++=+++-+.|-|.+++- -|+ +++... .++.+ ....+. ++.-+ |+ .++++.
T Consensus 23 ayd~~~A~~~d~agiD~iLVGDSlgmv-----~~G~~~T~~vt~d~mi~H~~aV~rga~~~~iv~DmPf~sy~~s~~~a~ 97 (261)
T pfam02548 23 AYDYPTARLADEAGVDVILVGDSLGMV-----VLGHESTLPVTLEEMIYHTKAVARGAPRAFVVADMPFGSYEASPEQAL 97 (261)
T ss_pred ECCHHHHHHHHHCCCCEEEECCCCHHH-----CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 289999999998599889976851431-----257756672799999999999985288864994787532467999999
Q ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC---------CCC----C
Q ss_conf 998875310453777442564136776668899998558999999999850279069998611---------345----6
Q gi|254781167|r 63 VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI---------GVD----D 129 (322)
Q Consensus 63 ~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl---------G~~----~ 129 (322)
..|.+++.+.|+|.|-|-.|-- ..+++++++++ ++||---+-| |+. .
T Consensus 98 ~nA~rlmke~GadaVKlEgg~~-------------------~~~~I~~l~~~-GIPV~gHiGL~PQ~~~~~GG~r~qGk~ 157 (261)
T pfam02548 98 RNAARLMKEAGADAVKLEGGAE-------------------MADTIKALVDR-GIPVMGHIGLTPQSVNQLGGYKVQGRT 157 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCC-------------------HHHHHHHHHHC-CCCEEEEECCCCHHCCCCCCCCCCCCC
T ss_conf 9999999854999899788853-------------------58999999988-997653423674011236885102599
Q ss_pred CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 653220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 130 QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
.+....+++-++.++++|+.+|-+-+=. .+...++.+.+ .+|+|+-|
T Consensus 158 ~~ea~~l~~dA~~le~AGa~~ivlE~vp------------------~~la~~It~~~-~IPtIGIG 204 (261)
T pfam02548 158 EEEAEQLLEDAKALEEAGAFALVLECVP------------------AELAKEITEKL-SIPTIGIG 204 (261)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCH------------------HHHHHHHHHCC-CCCEEEEC
T ss_conf 9999999999999984687489996670------------------99999999648-99899726
No 423
>TIGR00284 TIGR00284 dihydropteroate synthase-related protein; InterPro: IPR005236 The proteins of this family have been found so far only in the four archaeal species. The central region of the proteins shows considerable homology to the amino-terminal half of dihydropteroate synthases. .
Probab=69.61 E-value=8.3 Score=18.36 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=45.1
Q ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99887531045377744256413677666889999855899999999985027-90699986113456653220145543
Q gi|254781167|r 63 VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVK 141 (322)
Q Consensus 63 ~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~ 141 (322)
.+++..+.+ |+|.|+|=|+.-. .|++.+.+.|+.+++.. +-||+|-+- +.. ++..
T Consensus 181 ~~~~~~~r~-gad~v~lG~~~~~-------------~d~d~vk~kvk~a~d~~kD~pv~~dt~-------~~~---el~e 236 (529)
T TIGR00284 181 EKALRRLRD-GADMVALGTGVFD-------------DDADKVKEKVKIALDLLKDSPVSVDTE-------SLK---ELKE 236 (529)
T ss_pred HHHHHHHHC-CCCEEEECCCCCC-------------CCHHHHHHHHHHHHHHCCCCEEEEECC-------CHH---HHHH
T ss_conf 999999855-9968984575466-------------677899999999997207860686268-------878---9999
Q ss_pred HHCCCCCCHHH
Q ss_conf 20001220121
Q gi|254781167|r 142 SIKKSGVNGIW 152 (322)
Q Consensus 142 ~~~~~g~~~it 152 (322)
...+|++.|.
T Consensus 237 -a~~aGAs~v~ 246 (529)
T TIGR00284 237 -AVKAGASFVL 246 (529)
T ss_pred -HHHCCCCEEE
T ss_conf -9863865687
No 424
>TIGR03586 PseI pseudaminic acid synthase.
Probab=69.41 E-value=7.2 Score=18.82 Aligned_cols=99 Identities=8% Similarity=0.244 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCC-HHHHHHHHH
Q ss_conf 2564136776668899998558999999999850279069998611345665322014554320001220-121001356
Q gi|254781167|r 80 NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVN-GIWIHARKA 158 (322)
Q Consensus 80 N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~-~itiH~Rt~ 158 (322)
.+|+|.=|| +|+-+.+..++..+.+ .+.||-+= .|- .+..++.+.++.+.+.|.. .+.+||-+.
T Consensus 108 ~l~~~~~KI-----aS~d~~n~~Li~~iak-----~~kpviiS--tG~---s~~~EI~~av~~~~~~~~~~i~llhC~s~ 172 (327)
T TIGR03586 108 SLDVPAYKI-----ASFEITDLPLIRYVAK-----TGKPIIMS--TGI---ATLEEIEEAVEAAREAGCKDLVLLKCTSS 172 (327)
T ss_pred HCCCCEEEE-----CCHHHCCHHHHHHHHC-----CCCCEEEE--CCC---CCHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 707995998-----9415366569999866-----48867996--888---75456788888776502557156525858
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 64025774212276610467876667388753025777789989
Q gi|254781167|r 159 ILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ 202 (322)
Q Consensus 159 ~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~ 202 (322)
|=.+ ...++...+..+++.+ +.+++..+--....-
T Consensus 173 ---YPt~-----~~~~nL~~I~~lk~~f-~~~vG~SDHt~g~~~ 207 (327)
T TIGR03586 173 ---YPAP-----LEDANLRTIPDLAERF-NVPVGLSDHTLGILA 207 (327)
T ss_pred ---CCCC-----HHHCCHHHHHHHHHHC-CCCEEECCCCCCCHH
T ss_conf ---9989-----3774367899999974-997583898998267
No 425
>PRK06247 pyruvate kinase; Provisional
Probab=69.26 E-value=3.1 Score=21.53 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=13.1
Q ss_pred HHHCCCCEEEECCCCCHH
Q ss_conf 742035234412200012
Q gi|254781167|r 206 ILPSVDGVMIGRAAYKNS 223 (322)
Q Consensus 206 ~l~~~dgvMigRga~~~P 223 (322)
.+.-+|||||+||=++-=
T Consensus 230 Ii~~sDgIMVARGDLgvE 247 (477)
T PRK06247 230 IVEASDAIMVARGDLGVE 247 (477)
T ss_pred HHHHHCEEEEECCCCCCC
T ss_conf 998617789965865455
No 426
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=69.16 E-value=5.9 Score=19.48 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=78.1
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCC---CCEEEECCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCC
Q ss_conf 45784699982699899999887531045---3777442564136776668899998558999-------9999998502
Q gi|254781167|r 45 TQEKPLALQIGGADISKLVEAAKIVEDFG---YNEINLNVGCPSARVHEGSFGACLMLNPDIV-------GDCIAAMCKA 114 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g---~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~-------~~iv~~~~~~ 114 (322)
..+..+ +-|..++-..+.+..+.+.+.| |=++||==|=- ....|--.|++--.+ ..+++..++
T Consensus 16 ~s~~~~-vfll~g~I~~l~~~v~~~k~~gK~vfVHiDli~GL~-----~d~~av~fL~~~~~~dGIISTk~~~i~~Ak~- 88 (174)
T pfam04309 16 ESEYQV-VFLLTGHILNLKEIVKLLKQRGKTVFVHVDLVEGLS-----NDEEAIEFIKEVIEPDGIISTKSKVIKKAKK- 88 (174)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-----CCHHHHHHHHHHCCCCEEEECCHHHHHHHHH-
T ss_conf 499989-999558087899999999987998999852167778-----9889999999824899999688999999998-
Q ss_pred CCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 79069998611345665322014554320001220121001356640257742122766104678766673887530257
Q gi|254781167|r 115 LSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN 194 (322)
Q Consensus 115 ~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N 194 (322)
.++. .=-|+-. -+...+..-.+.++....|+|-|=|=. --+++.++++.. ..|+++-
T Consensus 89 ~gl~--tIqR~Fl---iDS~al~~~~~~i~~~~PD~IEilPG~-----------------~p~~i~~i~~~~-~~PiIAG 145 (174)
T pfam04309 89 LGLP--AIQRLFL---LDSIALERSIEQIEKLEPDFIEVLPGV-----------------MPKVIQEITERT-NIPIIAG 145 (174)
T ss_pred CCCE--EEEEEEE---EEHHHHHHHHHHHHHCCCCEEEECCHH-----------------HHHHHHHHHHHC-CCCEEEE
T ss_conf 7992--8977643---417789999999864798999998666-----------------999999999747-9999976
Q ss_pred CCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 77789989888742-0352344122
Q gi|254781167|r 195 GGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 195 Gdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
|=|.+.||+.+.+. |+++|.-..-
T Consensus 146 GLI~~~edv~~aL~aGA~aVSTS~~ 170 (174)
T pfam04309 146 GLIRTEEEVREALKAGAVAVSTSNK 170 (174)
T ss_pred CCCCCHHHHHHHHHCCCEEEECCCH
T ss_conf 7838899999999849969987884
No 427
>PRK05826 pyruvate kinase; Provisional
Probab=69.03 E-value=3.3 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=23.7
Q ss_pred HHHCCCCEEEECCCCCHHHHH-------HHHH--------------HHHCCCCCCCCCCHHHHH
Q ss_conf 742035234412200012439-------9999--------------987199888899988999
Q gi|254781167|r 206 ILPSVDGVMIGRAAYKNSAML-------TTVD--------------EYFSNPLTGSSPIKTRVD 248 (322)
Q Consensus 206 ~l~~~dgvMigRga~~~P~if-------~~I~--------------~~l~~~~~~~~p~~~~~~ 248 (322)
.++..|||||+||=++-=-=+ .+|- +.+......+.|+..|..
T Consensus 234 Ii~~sDgIMIARGDLgvEi~~e~vp~~Qk~Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~ 297 (461)
T PRK05826 234 IIEASDGIMVARGDLGVEIPDAEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVS 297 (461)
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHH
T ss_conf 9986589999778530326876749999999998875499899976568976079999727787
No 428
>PRK10128 putative aldolase; Provisional
Probab=68.91 E-value=8.6 Score=18.26 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 9887531045377--74425641367766688999985589999999998502790699986113456653220145543
Q gi|254781167|r 64 EAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVK 141 (322)
Q Consensus 64 ~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~ 141 (322)
..++++...|||. ||.-=|. -+.+-+..+++++...-..|+ +|+.+.+ ...+.
T Consensus 13 ~~aEi~a~~G~D~v~iD~EHg~---------------~~~~~~~~~~~a~~~~~~~pi---VRv~~~~-------~~~i~ 67 (250)
T PRK10128 13 YMAEIAATSGYDWLLIDGEHAP---------------NTIQDLYHQLQAVAPYASQPV---IRPVEGS-------KALIK 67 (250)
T ss_pred HHHHHHHCCCCCEEEEECCCCC---------------CCHHHHHHHHHHHHHCCCCEE---EECCCCC-------HHHHH
T ss_conf 9999998089899998177899---------------999999999999986599719---9858999-------88999
Q ss_pred HHCCCCCCHHHH
Q ss_conf 200012201210
Q gi|254781167|r 142 SIKKSGVNGIWI 153 (322)
Q Consensus 142 ~~~~~g~~~iti 153 (322)
.+.+.|++.|.+
T Consensus 68 r~LD~Ga~Giiv 79 (250)
T PRK10128 68 QVLDIGAQTLLI 79 (250)
T ss_pred HHHHCCCCEEEE
T ss_conf 998378987785
No 429
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases; InterPro: IPR013370 This family consists of muconate cycloisomerase (5.5.1.1 from EC) and chloromuconate cycloisomerase (5.5.1.7 from EC), enzymes that often overlap in specificity. It does not include more distantly related proteins such as mandelate racemase (5.1.2.2 from EC).; GO: 0018849 muconate cycloisomerase activity, 0018850 chloromuconate cycloisomerase activity, 0030145 manganese ion binding.
Probab=68.73 E-value=8.7 Score=18.24 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCCCCEEEEEECCCHHH-HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 45784699982699899-99988753104537774425641367766688999985589999999998502790699986
Q gi|254781167|r 45 TQEKPLALQIGGADISK-LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~-~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
.+.-|+.+=|+..|.+. ..||-+++++..-.-+=|-||--. +-.|-.+|.+|-+++-...++.|=|=
T Consensus 129 Rd~vdV~WtLasgdtd~dI~EAe~~~E~~rh~~FKLKiG~~~-----------~a~DV~hV~~I~~ALg~r~~VRVDVN- 196 (369)
T TIGR02534 129 RDSVDVLWTLASGDTDRDIEEAEELLEEKRHRSFKLKIGARD-----------LADDVAHVVAIKKALGDRASVRVDVN- 196 (369)
T ss_pred ECCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-----------HHHHHHHHHHHHHHHCCCEEEEEECC-
T ss_conf 144540242115753478999999999726882154437888-----------65779999999997299528997203-
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 11345665322014554320001220121001356640257742122766104678766673887530257777899898
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQA 203 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a 203 (322)
--| +..+.+..++.++++|++.|= +.+|-=+.+..++|...+ ++||=+-=-+++++||
T Consensus 197 -~aW----~e~~A~~~~~~LadaGv~LIE----------------QPtpae~~~~LarLt~r~-~VpIMADE~v~gP~dA 254 (369)
T TIGR02534 197 -AAW----DELEALKYLPQLADAGVELIE----------------QPTPAEQREALARLTRRF-NVPIMADESVTGPADA 254 (369)
T ss_pred -CCC----CHHHHHHHHHHHHHCCHHHHC----------------CCCCHHHHHHHHHHHHHC-CCCEEECCCCCCHHHH
T ss_conf -667----878999998888850700004----------------889620489999998433-8854304456882789
Q ss_pred HHHH
Q ss_conf 8874
Q gi|254781167|r 204 LKIL 207 (322)
Q Consensus 204 ~~~l 207 (322)
.+..
T Consensus 255 l~~a 258 (369)
T TIGR02534 255 LEIA 258 (369)
T ss_pred HHHH
T ss_conf 9999
No 430
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=68.63 E-value=3 Score=21.70 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=58.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCCEEE
Q ss_conf 46999826998999998875310453777--442564136776668899998558-------999999999850279069
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVEDFGYNEI--NLNVGCPSARVHEGSFGACLMLNP-------DIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~~~g~~~i--dlN~GCP~~~v~~~g~GaaLl~~p-------~~~~~iv~~~~~~~~~pv 119 (322)
-+++.=-++||+.+++|++++.+.|.-.| -+| |.|.|.+.-..==+.| +-..++.+-..+ .++|+
T Consensus 135 gvair~~Sgdpekfa~ave~v~~~~~pv~l~s~d-----pevmkaaLev~~dqkPllYaAte~n~~e~~klav~-y~vpl 208 (467)
T COG1456 135 GVAIRNRSGDPEKFAEAVEKVAEAGLPVILCSFD-----PEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVE-YKVPL 208 (467)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC-----HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-CCCCE
T ss_conf 6999816899799999999998658967999579-----99999999876126852543320139999998844-48757
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99861134566532201455432000122012100135
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARK 157 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt 157 (322)
.+-- ..+.+.+..++..+..+|++-|.+.|-|
T Consensus 209 vl~a------~~dl~~lk~la~~~~~~Gi~divLdPgT 240 (467)
T COG1456 209 VLSA------FNDLDDLKNLAVTYAQAGIKDIVLDPGT 240 (467)
T ss_pred EEEC------CCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9855------6778999999999997397527766886
No 431
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=67.97 E-value=9 Score=18.13 Aligned_cols=143 Identities=19% Similarity=0.260 Sum_probs=87.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEE---CCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC-CCCEEEEEEEECC
Q ss_conf 9982699899999887531045377744---25641367766688-99998558999999999850-2790699986113
Q gi|254781167|r 52 LQIGGADISKLVEAAKIVEDFGYNEINL---NVGCPSARVHEGSF-GACLMLNPDIVGDCIAAMCK-ALSIPVTVKCRIG 126 (322)
Q Consensus 52 ~Ql~g~~p~~~~~aa~~~~~~g~~~idl---N~GCP~~~v~~~g~-GaaLl~~p~~~~~iv~~~~~-~~~~pvsvK~RlG 126 (322)
..+-+-.|+.+.+=++.+.+.|+.+|=| |.|| + |-.+-..+.-++++|+.+.+ .-+++ -||++
T Consensus 177 G~~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~---------YgG~D~~~~~~~La~LL~~l~~ki~G~~---RIR~~ 244 (455)
T TIGR00089 177 GRERSRPPEDILEEVKELVSKGVKEITLLGQNVNA---------YGGKDLEGKTNSLADLLRELSKKIDGIE---RIRFT 244 (455)
T ss_pred CEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECC---------CCCCCCCCCCCCHHHHHHHHHHHCCCCE---EEEEE
T ss_conf 60013588999999999984698099999885256---------2477888897647999999840059702---68860
Q ss_pred CCCCCCCCCHHHHHHHHCCC--C--CCHHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--
Q ss_conf 45665322014554320001--2--201210---01356640257742122766104678766673887530257777--
Q gi|254781167|r 127 VDDQIPAVALRNLVKSIKKS--G--VNGIWI---HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL-- 197 (322)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~--g--~~~iti---H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi-- 197 (322)
.- ++.....++++++.+. . +..+.| ||=..+|+-+. -.|...-..+.|.+|++.+|++.| .-||
T Consensus 245 ~~--hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~---R~Y~~e~~~~~~~k~r~~~P~~~i--~TDiIV 317 (455)
T TIGR00089 245 SS--HPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMN---RKYTREEYLEIVEKLRAKVPDAAI--TTDIIV 317 (455)
T ss_pred CC--CCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCC---CCCCHHHHHHHHHHHHHHCCCCEE--ECCEEE
T ss_conf 46--70326878999998507885352022126618869997037---898889999999999984788177--502688
Q ss_pred ----CCHHHHHH---HHH--CCCCE
Q ss_conf ----89989888---742--03523
Q gi|254781167|r 198 ----EDMSQALK---ILP--SVDGV 213 (322)
Q Consensus 198 ----~~~~~a~~---~l~--~~dgv 213 (322)
.|-||..+ .++ ++|-+
T Consensus 318 GFPGETeEdF~~Tl~l~~ev~F~~~ 342 (455)
T TIGR00089 318 GFPGETEEDFEETLDLVEEVKFDKL 342 (455)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 2899988999999999852384434
No 432
>pfam01981 PTH2 Peptidyl-tRNA hydrolase PTH2. Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.
Probab=67.92 E-value=9 Score=18.12 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=52.4
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 442564136776668899998558---99999999985027906999861134566532201455432000122012100
Q gi|254781167|r 78 NLNVGCPSARVHEGSFGACLMLNP---DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH 154 (322)
Q Consensus 78 dlN~GCP~~~v~~~g~GaaLl~~p---~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH 154 (322)
||+||.- |+..+.+-|++..-. ..-.+.++.-...-...|.+|. ++...+.++.+.+.+.|+....|+
T Consensus 11 DL~Ms~G--KiaAQ~~HAav~~~~~~~~~~~~~~~~W~~~G~~KIvlkv-------~de~~L~~l~~~a~~~gl~~~~V~ 81 (116)
T pfam01981 11 DLKMGKG--KIAAQCAHAAVGAYKKALKNNPELLKAWEREGQKKIVLKV-------NSEEELLELKEKAKSLGLPTSLIQ 81 (116)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7898954--5999987999999999998798999999977996799972-------999999999999998499669998
Q ss_pred --HHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --1356640257742122766104678766
Q gi|254781167|r 155 --ARKAILKGLSPKDNRKIPNLDYDIVYEI 182 (322)
Q Consensus 155 --~Rt~~~~g~s~~~~~~~~~~~~~~i~~l 182 (322)
|||.+-.|.-+ =-.+||+.-+.|..+
T Consensus 82 DAG~Tei~pgt~T--vlaiGP~~~~~id~i 109 (116)
T pfam01981 82 DAGRTQIAPGTVT--VLGIGPAPKELVDKI 109 (116)
T ss_pred CCCCEECCCCCEE--EEEECCCCHHHHHHH
T ss_conf 6873145999858--999787878898897
No 433
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=67.82 E-value=9 Score=18.11 Aligned_cols=165 Identities=21% Similarity=0.298 Sum_probs=96.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHCCCCEEEE
Q ss_conf 469998269989999988753104537774425641367766688999-9855899-------99999998502790699
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGAC-LMLNPDI-------VGDCIAAMCKALSIPVT 120 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~Gaa-Ll~~p~~-------~~~iv~~~~~~~~~pvs 120 (322)
|=++||-|.=- .-+|..++..||+.|=| ++++=++ -|-=|++ |..=++.+..++++|+=
T Consensus 12 ~~ilq~pGa~n---~~~AL~Ae~aGF~A~YL----------SGaa~aa~sLGlPDLG~~tL~Eva~~~r~Itr~~~LPlL 78 (287)
T TIGR02317 12 EDILQIPGAIN---GLVALLAERAGFEAIYL----------SGAAVAAGSLGLPDLGITTLTEVAERARRITRVTDLPLL 78 (287)
T ss_pred CCCEEECCHHH---HHHHHHHHHCCCCEEEE----------HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 89748714061---89999998637556610----------168774132067767667878999998877753048727
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHH---C--CCCCCCCC
Q ss_conf 98611345665322014554320001220121001356640-257742122766104678766673---8--87530257
Q gi|254781167|r 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILK-GLSPKDNRKIPNLDYDIVYEIKKE---N--PDLFIGLN 194 (322)
Q Consensus 121 vK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~-g~s~~~~~~~~~~~~~~i~~l~~~---~--~~~~i~~N 194 (322)
|=+=.||.+-- +.-.-++.++++|+.++.| =-|+.+ =++...+-..=+.+ +-+.+|+.+ . ++..|++=
T Consensus 79 VD~DTGFGea~---nvaRTVreme~AGaAa~Hi--EDQv~pKrCGHL~gK~lv~~~-eMv~kI~AAv~Ar~De~f~iiAR 152 (287)
T TIGR02317 79 VDADTGFGEAL---NVARTVREMEDAGAAAVHI--EDQVLPKRCGHLNGKELVSRD-EMVRKIKAAVDARRDEDFVIIAR 152 (287)
T ss_pred EEEECCCCCHH---HHHHHHHHHHHHHHHHCCH--HHHCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 86332898354---4999999999844540046--774254426789887404887-79999999714789997277531
Q ss_pred CC---CCCHHH----HHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 77---789989----888742-03523441220001243999999871
Q gi|254781167|r 195 GG---LEDMSQ----ALKILP-SVDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 195 Gd---i~~~~~----a~~~l~-~~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
-| +.-.+. |..+++ |+| ||=--|+.+=--|+|-.+...
T Consensus 153 TDA~AvEGld~AI~RA~aYvEAGAD--~IFpEAL~~~~eFr~Fa~~vk 198 (287)
T TIGR02317 153 TDARAVEGLDAAIERAKAYVEAGAD--MIFPEALESEEEFREFAKAVK 198 (287)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCC
T ss_conf 0234213658899999867872615--313878532888899998668
No 434
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=67.79 E-value=9.1 Score=18.10 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHCCCC-CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 998999998875310453-7774425641367766688999985589999999998502790699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGY-NEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~-~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
-+++++.++|+.+.+.|. ....+-.| ++ .| ++++.+.++++++++.+++++.+- +|.. +
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aag-------r~-~~----~~~~~i~~~v~~Vk~~~~le~c~s--lG~l---~--- 143 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAG-------RG-PG----RDMEEVVEAIKAVKEELGLEVCAS--LGML---T--- 143 (335)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEC-------CC-CC----CCHHHHHHHHHHHHHHCCCHHHHC--CCCC---C---
T ss_conf 899999999999997499507998731-------67-77----448999999999998469286402--5879---9---
Q ss_pred HHHHHHHHCCCCCCHHH
Q ss_conf 14554320001220121
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIW 152 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~it 152 (322)
.+-++.+.++|++...
T Consensus 144 -~eq~~~L~~aGvd~yn 159 (335)
T COG0502 144 -EEQAEKLADAGVDRYN 159 (335)
T ss_pred -HHHHHHHHHCCHHHEE
T ss_conf -9999999971811330
No 435
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=67.60 E-value=9.1 Score=18.08 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=44.5
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 44256413677666889999855899---999999985027906999861134566532201455432000122012100
Q gi|254781167|r 78 NLNVGCPSARVHEGSFGACLMLNPDI---VGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH 154 (322)
Q Consensus 78 dlN~GCP~~~v~~~g~GaaLl~~p~~---~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH 154 (322)
||+|+.- |+..+.+-+++...... -.+.++.-...-...|.+|. .+.+.+.++...+.+.|+..-.|+
T Consensus 10 DL~Ms~G--KiaAQ~~HAav~~~~~a~~~~~~~~~~W~~~G~~KIvlkv-------~~e~~l~~l~~~a~~~~l~~~~V~ 80 (115)
T cd02430 10 DLKMGKG--KIAAQCAHAALGAYKKAMKSNPELLRAWEREGQKKIVLKV-------NSEEELLELKKKAKSLGLPTSLIQ 80 (115)
T ss_pred CCCCCCH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEC-------CCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8898800--5999998999999999986498999999967995699977-------999999999999998799789998
Q ss_pred --HHHHHH
Q ss_conf --135664
Q gi|254781167|r 155 --ARKAIL 160 (322)
Q Consensus 155 --~Rt~~~ 160 (322)
|||.+-
T Consensus 81 DAG~Tev~ 88 (115)
T cd02430 81 DAGRTQIA 88 (115)
T ss_pred CCCCCCCC
T ss_conf 79874028
No 436
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=67.19 E-value=4.6 Score=20.25 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCCCEEEEEEC-CCHHHH--HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEE
Q ss_conf 57846999826-998999--9988753104537774425641367766688999985589999999998502790-6999
Q gi|254781167|r 46 QEKPLALQIGG-ADISKL--VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSI-PVTV 121 (322)
Q Consensus 46 ~e~p~~~Ql~g-~~p~~~--~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~-pvsv 121 (322)
.+-|+..|=.- .++-.+ .-.|+++.++|+.++=|| ..-.=+.|..--+++..-+..+++ .++ ||-|
T Consensus 55 ~~I~V~AQh~d~~~~GahTG~i~Aem~~d~Ga~g~lin---------HSErR~~~~laDElIe~~~~~~ke-lGL~~vvC 124 (244)
T TIGR00419 55 SEIPVYAQHVDAVKSGAHTGEISAEMLKDLGAKGTLIN---------HSERRSLLKLADELIEKKVARLKE-LGLTSVVC 124 (244)
T ss_pred CCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf 97522445410117876522368999984599728876---------526666887657888999999986-48827997
Q ss_pred EEECCCCCCCCC-CCHHH---------------HHHHHCCCCCCHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHH-H
Q ss_conf 861134566532-20145---------------5432000122012100135664025--774212276610467876-6
Q gi|254781167|r 122 KCRIGVDDQIPA-VALRN---------------LVKSIKKSGVNGIWIHARKAILKGL--SPKDNRKIPNLDYDIVYE-I 182 (322)
Q Consensus 122 K~RlG~~~~~~~-~~~~~---------------~~~~~~~~g~~~itiH~Rt~~~~g~--s~~~~~~~~~~~~~~i~~-l 182 (322)
- |=...++. -.+.+ .+..+.+..-+.|.+=|==.+=.|. ||.+-.-+-..=-||++. +
T Consensus 125 ~---GET~~~~EaGkteev~~~~~n~V~~t~aAaADkikDl~p~~vAvEPpelIGtGipvS~A~pe~V~~~vrD~l~~na 201 (244)
T TIGR00419 125 T---GETLEEREAGKTEEVAARTINNVLTTAAAAADKIKDLEPDVVAVEPPELIGTGIPVSKAQPEVVHGSVRDHLKKNA 201 (244)
T ss_pred E---CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4---5763321057424555545644765588988774415897899827503227878988756777655788886304
Q ss_pred -HHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCCC
Q ss_conf -67388753025777789989888742-0352344122000
Q gi|254781167|r 183 -KKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAYK 221 (322)
Q Consensus 183 -~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~~ 221 (322)
++-.+...|.+=|+|++.+|....++ ++|||++|-|.+.
T Consensus 202 ~~evn~~V~vlcGagi~~~~d~~~A~~lg~eGvLlasg~~K 242 (244)
T TIGR00419 202 VKEVNESVRVLCGAGITTGEDAELAAQLGAEGVLLASGVLK 242 (244)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCEEEC
T ss_conf 50126640788768616588999973699776887255643
No 437
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=67.18 E-value=3.5 Score=21.16 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=5.8
Q ss_pred CCCCCHHHHHH
Q ss_conf 01220121001
Q gi|254781167|r 145 KSGVNGIWIHA 155 (322)
Q Consensus 145 ~~g~~~itiH~ 155 (322)
+.|+++||||-
T Consensus 155 ~fGAdmvTiHl 165 (401)
T TIGR00381 155 EFGADMVTIHL 165 (401)
T ss_pred HHCCCEEEEEE
T ss_conf 62766388644
No 438
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691 This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=66.62 E-value=4.4 Score=20.42 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHCCCCCEEEE--CCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9899999887531045377744--256413677666889999855899999-9999850279069998611345665322
Q gi|254781167|r 58 DISKLVEAAKIVEDFGYNEINL--NVGCPSARVHEGSFGACLMLNPDIVGD-CIAAMCKALSIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 58 ~p~~~~~aa~~~~~~g~~~idl--N~GCP~~~v~~~g~GaaLl~~p~~~~~-iv~~~~~~~~~pvsvK~RlG~~~~~~~~ 134 (322)
|-+...+-.+...+-|-..|-+ --|=|+ +--+.+..++-+ .++.+.- -+||--= .| . .+.+
T Consensus 19 D~~~~~~L~E~~~~~G~H~~SV~GT~GEP~---------~~T~EER~~~~E~~~~~~~G--R~P~~PG--TG--~-~~~~ 82 (294)
T TIGR02313 19 DEKKLRRLVEFVVENGSHAVSVTGTSGEPS---------SLTLEERKRVIEVVLDTVAG--RVPVIPG--TG--A-LRLD 82 (294)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCCCC---------CCCHHHHHHHHHHHHHHHCC--CCCCCCC--CC--C-CCHH
T ss_conf 188887675432148711576056569886---------54278899999999976168--4122378--87--6-5403
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCC
Q ss_conf 014554320001220121001356640257742122766---10467876667388753025
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPN---LDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~---~~~~~i~~l~~~~~~~~i~~ 193 (322)
++.++-+.++|+|+++=-|= - -+|..| +-|++++.+++++||+|+++
T Consensus 83 ETl~~T~~A~E~GA~~AMVI-----V-------PYY~KPNQE~LY~~F~~VA~~VPD~P~~I 132 (294)
T TIGR02313 83 ETLELTKKAKEAGADAAMVI-----V-------PYYVKPNQEALYDYFKEVADAVPDIPLLI 132 (294)
T ss_pred HHHHHHHHHHHCCCCCCEEE-----E-------CCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 57888888885067721577-----4-------47779875678999999975238975788
No 439
>PRK12376 putative translaldolase; Provisional
Probab=66.60 E-value=9.5 Score=17.94 Aligned_cols=144 Identities=15% Similarity=0.259 Sum_probs=80.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 5784699982699899999887531045377744256413677-666889999855899999999985027906999861
Q gi|254781167|r 46 QEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARV-HEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v-~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
.+.|+.+|++|.++++|.+-|+.+...|-+ +..=-|. . +++-.| .+.++.+.+ -++++.|-.=
T Consensus 59 ~~~~is~EV~~~~~~~mi~qA~~l~~~~~n---v~VKIP~--t~~~G~~~----------~~~ik~L~~-~Gi~vnvTai 122 (238)
T PRK12376 59 PDYPISFEVFADDLETMEKEAEILASLGEN---VYVKIPI--TNTKGEST----------IPLIKKLSA-DGIKLNVTAI 122 (238)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHCCC---EEEEECC--CCCCHHHH----------HHHHHHHHH-CCCCEEEEEE
T ss_conf 998779999568778899999999975897---7999778--57551899----------999999988-7996689998
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCCCCCCCCCCCHHHHHH---HHHHHCCCCCCCCCCCCCCH
Q ss_conf 13456653220145543200012201210-013566402577421227661046787---66673887530257777899
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSPKDNRKIPNLDYDIVY---EIKKENPDLFIGLNGGLEDM 200 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~~~~~~~~~~~~~~i~---~l~~~~~~~~i~~NGdi~~~ 200 (322)
| +.......+..+...|+..|.. =||-.. .|..| ++.+. ++.+..+...| .-..+++.
T Consensus 123 --f----s~~Qa~~a~~A~a~~~a~yvSpfvGRi~D-~G~Dg----------~~~i~~~~~i~~~~~~tkI-LaASiR~~ 184 (238)
T PRK12376 123 --F----TIEQVKEVVDALTPGVPSIVSVFAGRIAD-TGVDP----------LPLMKEALKICHQKPGVEL-LWASPREL 184 (238)
T ss_pred --E----CHHHHHHHHHHCCCCCCEEEEEECCHHHH-CCCCC----------HHHHHHHHHHHHCCCCEEE-EEEECCCH
T ss_conf --2----79999999985277788277512130865-59982----------7999999999842887499-99714888
Q ss_pred HHHHHHH-HCCCCEEEECCCCCHHHHHHHH
Q ss_conf 8988874-2035234412200012439999
Q gi|254781167|r 201 SQALKIL-PSVDGVMIGRAAYKNSAMLTTV 229 (322)
Q Consensus 201 ~~a~~~l-~~~dgvMigRga~~~P~if~~I 229 (322)
.+..+.. .|||-|-+. |-+|.+.
T Consensus 185 ~~v~~a~~~GadiiTip------p~vl~kl 208 (238)
T PRK12376 185 YNIIQADQLGCDIITVT------ADILKKL 208 (238)
T ss_pred HHHHHHHHCCCCEEECC------HHHHHHH
T ss_conf 99999998699999849------9999986
No 440
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production .; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process.
Probab=66.57 E-value=9.5 Score=17.94 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---------EEEEEECCC
Q ss_conf 99899999887531045377744256413677666889999855899999999985027906---------999861134
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP---------VTVKCRIGV 127 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p---------vsvK~RlG~ 127 (322)
|..+.|..|++++.+-|++.|=|-=|=| .+.+.|+.+-+ ..+| =||.+==||
T Consensus 93 S~~~Al~nA~~v~~e~gA~avKLEGG~P------------------~~~e~v~~LT~-~GvpV~GH~GLtPQsV~~~GGY 153 (267)
T TIGR00222 93 SPEQALKNAARVLQETGADAVKLEGGEP------------------ELVETVKALTE-EGVPVVGHLGLTPQSVRLLGGY 153 (267)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCH------------------HHHHHHHHHHH-CCCEEEECCCCCCCEEEECCCE
T ss_conf 6788999999997323776576207880------------------68899999862-7845874147887334005740
Q ss_pred C----CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 5----6653220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 128 D----DQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 128 ~----~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
. +++..+.+++=+-.+++||+.+|-+=+=+ -+..+++.+.++ ||+||-|
T Consensus 154 k~qGk~~~~~~kLL~dAl~LeeAGv~lLVLE~vp------------------~eLA~~Ite~L~-IP~IGIG 206 (267)
T TIGR00222 154 KVQGKDEEAAKKLLEDALALEEAGVQLLVLECVP------------------AELAAKITEKLK-IPVIGIG 206 (267)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------HHHHHHHHHCCC-CCEEEEC
T ss_conf 0027887888889999999998766743532768------------------257888973079-9867437
No 441
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=65.67 E-value=3.5 Score=21.18 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=11.3
Q ss_pred HHCCCCEEEECCCCCH
Q ss_conf 4203523441220001
Q gi|254781167|r 207 LPSVDGVMIGRAAYKN 222 (322)
Q Consensus 207 l~~~dgvMigRga~~~ 222 (322)
++..|||||+||=++-
T Consensus 235 i~~sDgIMIARGDLgv 250 (480)
T cd00288 235 LEASDGIMVARGDLGV 250 (480)
T ss_pred HHHCCEEEEECCCCCC
T ss_conf 9853889997786556
No 442
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=64.99 E-value=8.5 Score=18.32 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99899899987389998999999986
Q gi|254781167|r 274 QQITRHMIGLFHGFPNSRRCRHILTV 299 (322)
Q Consensus 274 ~~irKhl~~y~kGlpgak~~R~~Ls~ 299 (322)
..+--|..-+.||.|++..|-..+|.
T Consensus 502 ~kIAAHaaDlakg~p~A~~rD~~ms~ 527 (612)
T PRK09284 502 YKIAAHAADLAKGHPGAQIRDNALSK 527 (612)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999899886479307788999999
No 443
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=64.42 E-value=10 Score=17.65 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 99887531045377744256413677666889999855899999999985027906999861134566532201455432
Q gi|254781167|r 63 VEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKS 142 (322)
Q Consensus 63 ~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~ 142 (322)
.++.+.+.+.|.-.|.|-=|=| || .|+ +.+|++.+++ -+..|++-+ |...+.+-++.
T Consensus 62 ee~~~~~~e~Gap~V~itGGEP------------LL-r~d-l~eIv~~a~~-~g~~v~l~T--------NG~Ll~k~i~~ 118 (318)
T TIGR03470 62 EECLRAVDECGAPVVSIPGGEP------------LL-HPE-IDEIVRGLVA-RKKFVYLCT--------NALLLEKKLDK 118 (318)
T ss_pred HHHHHHHHHCCCCEEEECCCCC------------CC-CCC-HHHHHHHHHH-CCCEEEEEC--------CHHHHHHHHHH
T ss_conf 9999999984997899518874------------55-647-9999999997-599799977--------55200999999
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CC---HHHHHHHHHHHCCCCCCCCCCCCC---CHHHHHHHHH-----C
Q ss_conf 000122012100135664025774212276--61---046787666738875302577778---9989888742-----0
Q gi|254781167|r 143 IKKSGVNGIWIHARKAILKGLSPKDNRKIP--NL---DYDIVYEIKKENPDLFIGLNGGLE---DMSQALKILP-----S 209 (322)
Q Consensus 143 ~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~--~~---~~~~i~~l~~~~~~~~i~~NGdi~---~~~~a~~~l~-----~ 209 (322)
+.++|...+.|| +.|.....++..+ -+ -.+.|+.+++. .+.+..|--++ ++++..++++ |
T Consensus 119 ~~~~~~~~~~Vs-----LDG~~e~HD~~r~~~G~Fd~av~aIr~ak~~--G~~V~iN~Tvf~~~n~~~i~~~~d~~~~lg 191 (318)
T TIGR03470 119 FEPSPYLTFSVH-----LDGLREHHDASVCREGVFDRAVEAIREAKAR--GFRVTTNTTLFNDTDPEEVAEFFDYLTDLG 191 (318)
T ss_pred HHHCCCCEEEEE-----CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 851888369998-----0178788668871797799999999999986--994679989706899999999999998769
Q ss_pred CCCEEEECC
Q ss_conf 352344122
Q gi|254781167|r 210 VDGVMIGRA 218 (322)
Q Consensus 210 ~dgvMigRg 218 (322)
+||+||.=|
T Consensus 192 Vdgi~isp~ 200 (318)
T TIGR03470 192 VDGMTISPG 200 (318)
T ss_pred CCEEEECCC
T ss_conf 973897665
No 444
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=63.68 E-value=7.9 Score=18.54 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHH-HCC-CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 9989999988753-104-53777442564136776668899998558999999999850279069998611345665322
Q gi|254781167|r 57 ADISKLVEAAKIV-EDF-GYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 57 ~~p~~~~~aa~~~-~~~-g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~ 134 (322)
.+|+...+-.+.+ +.+ |...|-+.=..+ .-+.+.+.++.+.+++ .+++.++-.|.-. +
T Consensus 227 RSpe~VvdEIe~l~~~y~gv~~~~f~DD~F-------------t~~~~r~~eic~~i~~-l~i~W~~~~Rv~~----d-- 286 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTF-------------TDDKPRAEEIARKLGP-LGVTWSCNARANV----D-- 286 (472)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCC-------------CCCHHHHHHHHHHHHH-CCCEEEEEEECCC----C--
T ss_conf 599999999999998668975899947766-------------7899999999999987-6982787630348----9--
Q ss_pred CHHHHHHHHCCCCCCHHHHH
Q ss_conf 01455432000122012100
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIH 154 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH 154 (322)
.|+++.+.++|+..|.+=
T Consensus 287 --~E~l~~mk~AGc~~v~~G 304 (472)
T TIGR03471 287 --YETLKVMKENGLRLLLVG 304 (472)
T ss_pred --HHHHHHHHHHCCEEEEEE
T ss_conf --999999998398489980
No 445
>PRK08508 biotin synthase; Provisional
Probab=63.14 E-value=11 Score=17.49 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=70.6
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCC
Q ss_conf 998269-9899999887531045377744256413677666889999855899999999985027-90699986113456
Q gi|254781167|r 52 LQIGGA-DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDD 129 (322)
Q Consensus 52 ~Ql~g~-~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~ 129 (322)
++-+.= +++++.++|+.+.+.|+..+-+= +.+..-+. ++.+.+.++++.+++.+ ++.+++= +|.-
T Consensus 34 i~~Y~l~~~eeIl~~A~~a~~~G~~rf~lv--------~sg~~~~~--~~~e~v~~~v~~Ik~~~~~l~~c~s--lG~l- 100 (279)
T PRK08508 34 IKRYKRKEIEQIVQEAKMARANGALGFCLV--------TAGRGLDD--KKLEYVAKAAKAVKKEVPGLHLIAC--NGMA- 100 (279)
T ss_pred CCEECCCCHHHHHHHHHHHHHCCCCEEEEE--------EECCCCCH--HHHHHHHHHHHHHHHCCCCEEEEEE--CCCC-
T ss_conf 861078999999999999997599768999--------82368875--4499999999998633799357611--7857-
Q ss_pred CCCCCCHHHHHHHHCCCCCCHHHHHHH--HHHHHCC----CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC----CC
Q ss_conf 653220145543200012201210013--5664025----7742122766104678766673887530257777----89
Q gi|254781167|r 130 QIPAVALRNLVKSIKKSGVNGIWIHAR--KAILKGL----SPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL----ED 199 (322)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~itiH~R--t~~~~g~----s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi----~~ 199 (322)
+. +-++.+.++|++.. |-+ |. ...+ ++. -| .-+.+.+..+++.. +.+ ..|+| .|
T Consensus 101 --~~----e~~~~LkeAGvdrY--~hNlETs-~~~y~~I~tTh--ty--~dRl~tl~~~k~aG--l~v-CsGgIiGlGEt 164 (279)
T PRK08508 101 --SV----EQLKELKKAGIFSY--NHNLETS-KEFFPKICTTH--SW--EERFQTCLNAKEAG--LGL-CSGGIFGLGES 164 (279)
T ss_pred --CH----HHHHHHHHCCCCEE--CCCCCCC-HHHHCCCCCCC--CH--HHHHHHHHHHHHCC--CEE-ECCCEEECCCC
T ss_conf --99----99999998397123--0766767-68757658998--88--99999999999819--948-67854478999
Q ss_pred HHHHHHHH
Q ss_conf 98988874
Q gi|254781167|r 200 MSQALKIL 207 (322)
Q Consensus 200 ~~~a~~~l 207 (322)
.+|-.+++
T Consensus 165 ~edrve~a 172 (279)
T PRK08508 165 WEDRISML 172 (279)
T ss_pred HHHHHHHH
T ss_conf 89999999
No 446
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=63.03 E-value=11 Score=17.48 Aligned_cols=58 Identities=31% Similarity=0.420 Sum_probs=29.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
+-|++.-|- =|+....+| .+.|+|.|-||=|== .+.+.+.+++++.++ .++|+ |+|
T Consensus 69 ~iPlVADIH-F~~~lAl~a----~~~g~~kiRINPGNi--------------g~~~~~~~vv~~ak~-~~~pI----RIG 124 (345)
T pfam04551 69 PIPLVADIH-FDYRLALEA----IEAGVDKIRINPGNI--------------GRREKVKEVVEAAKE-RGIPI----RIG 124 (345)
T ss_pred CCCCEEECC-CCHHHHHHH----HHHHHCCCCCCCCCC--------------CCHHHHHHHHHHHHH-CCCCE----EEE
T ss_conf 997140042-489999999----986220156799774--------------867878999999998-39978----983
Q ss_pred CC
Q ss_conf 45
Q gi|254781167|r 127 VD 128 (322)
Q Consensus 127 ~~ 128 (322)
.+
T Consensus 125 vN 126 (345)
T pfam04551 125 VN 126 (345)
T ss_pred CC
T ss_conf 26
No 447
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=62.72 E-value=11 Score=17.44 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=19.7
Q ss_pred HHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 67876667388-753025777789989888742-035234412
Q gi|254781167|r 177 DIVYEIKKENP-DLFIGLNGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 177 ~~i~~l~~~~~-~~~i~~NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
+.+.++++..| ..+|.. .+.|.+++.+.++ |+|.||+=.
T Consensus 169 ~av~~~r~~~~~~~kIeV--Ev~tl~ea~~a~~~g~D~I~LDn 209 (269)
T cd01568 169 EAVKRARAAAPFEKKIEV--EVETLEEAEEALEAGADIIMLDN 209 (269)
T ss_pred HHHHHHHHHCCCCCEEEE--EECCHHHHHHHHHCCCCEEEECC
T ss_conf 999999986899843999--94989999999976999999879
No 448
>pfam03851 UvdE UV-endonuclease UvdE.
Probab=62.42 E-value=1.4 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=12.4
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 06999861134566532201455432000122
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSIKKSGV 148 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~ 148 (322)
+|-+||-||-+++++..-...+++...++.|+
T Consensus 172 L~~~vk~rLvlENDDk~ysv~dll~i~~~~~i 203 (275)
T pfam03851 172 LPDSVKLRLVLENDDKSYTVAELLPICEKLNI 203 (275)
T ss_pred CCHHHCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 79947126799558875779999999997399
No 449
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.45 E-value=12 Score=17.28 Aligned_cols=161 Identities=11% Similarity=0.139 Sum_probs=81.0
Q ss_pred HHCCCEEEECCCCCCHHHHC-CCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 82898299817033247760-89789830274578469998269989999988753104537774425641367766688
Q gi|254781167|r 15 LLTNNALLYTEMIVADAILR-GDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSF 93 (322)
Q Consensus 15 ~~~~~~~~~TEmi~a~~l~~-~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~ 93 (322)
+.|-+.+=.+-|++.+.+-. .+....+...+....+...-...|...+ +...+.|.+.|.+-++. +..-.+.+.
T Consensus 37 ~~Gv~~IEvgsfvspk~vP~~~d~~ev~~~i~~~~~~~~~~l~~n~~g~----~~A~~~g~~~i~i~~~~-Sd~h~~~nl 111 (287)
T PRK05692 37 AAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTPNLKGL----EAALAAGADEVAVFASA-SEAFSQKNI 111 (287)
T ss_pred HCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCCEEEEECCCHHHH----HHHHHCCCCEEEEEEEC-CHHHHHHHH
T ss_conf 8499999966877823021316799999876406796786643640427----99997798989999741-799999874
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEE--EEEEECC--CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99998558999999999850279069--9986113--4566532201455432000122012100135664025774212
Q gi|254781167|r 94 GACLMLNPDIVGDCIAAMCKALSIPV--TVKCRIG--VDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNR 169 (322)
Q Consensus 94 GaaLl~~p~~~~~iv~~~~~~~~~pv--svK~RlG--~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~ 169 (322)
+-..-...+.+.++++..++. ++.| ++-+=.| ++...+.+.+.++++.+.++|++.|.+=--+ +...|
T Consensus 112 ~~t~~e~l~~~~~~i~~a~~~-g~~v~~~i~~afg~p~~~~~~~~~l~~~~~~~~~~Ga~~I~laDT~---G~a~P---- 183 (287)
T PRK05692 112 NCSIAESLARFEPVAEAAKQA-GVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCDEISLGDTI---GVGTP---- 183 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC---CCCCH----
T ss_conf 799999999999999999976-9879998740136764686489999999999985799785447655---66699----
Q ss_pred CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 2766104678766673887530
Q gi|254781167|r 170 KIPNLDYDIVYEIKKENPDLFI 191 (322)
Q Consensus 170 ~~~~~~~~~i~~l~~~~~~~~i 191 (322)
..=++.+..+++.+|..++
T Consensus 184 ---~~v~~~i~~v~~~~~~~~i 202 (287)
T PRK05692 184 ---GQVRRVLEAVLAEFPAERL 202 (287)
T ss_pred ---HHHHHHHHHHHHHCCCCCE
T ss_conf ---9999999999986688723
No 450
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=61.36 E-value=12 Score=17.27 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCCCCCCCC
Q ss_conf 998999998875310453777442564136776668899998558999999999850279-0699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALS-IPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~-~pvsvK~RlG~~~~~~~~~ 135 (322)
.+|+.+.+.++.+.+.|.+.|.|- - +| | ...|..+.++++.+++.++ .|+|+-+- + +.-.
T Consensus 155 ~d~efl~ev~~aa~~aGa~~i~l~----D-Tv-----G---~~~P~~v~~~i~~l~~~~~~~~isvH~H-----N-D~Gl 215 (530)
T PRK12344 155 ANPEYALATLKAAAEAGADWVVLC----D-TN-----G---GTLPHEVAAIVAEVRARLPGAPLGIHAH-----N-DSGL 215 (530)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC----C-CC-----C---CCCHHHHHHHHHHHHHHCCCCEEEEEEC-----C-CCCH
T ss_conf 799999999999985299600237----8-86-----5---5588999999999997489982799845-----9-9688
Q ss_pred HHHHHHHHCCCCCCHH
Q ss_conf 1455432000122012
Q gi|254781167|r 136 LRNLVKSIKKSGVNGI 151 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~i 151 (322)
...-......+|++.+
T Consensus 216 AvANal~Av~aGA~~v 231 (530)
T PRK12344 216 AVANSLAAVRAGARQV 231 (530)
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999999998380604
No 451
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=60.56 E-value=12 Score=17.18 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=9.0
Q ss_pred CCCCEEEEEECCCHH
Q ss_conf 578469998269989
Q gi|254781167|r 46 QEKPLALQIGGADIS 60 (322)
Q Consensus 46 ~e~p~~~Ql~g~~p~ 60 (322)
...|.++-|.||||.
T Consensus 229 ~~~P~VLtIAGSDss 243 (738)
T PRK09517 229 NPAPRVLSIAGTDPT 243 (738)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 899856998426899
No 452
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=60.12 E-value=6 Score=19.44 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=11.8
Q ss_pred HCCCCEEEECCCCCH
Q ss_conf 203523441220001
Q gi|254781167|r 208 PSVDGVMIGRAAYKN 222 (322)
Q Consensus 208 ~~~dgvMigRga~~~ 222 (322)
+-.|||||+||=+|=
T Consensus 238 ~~SDGIMVARGDLGV 252 (477)
T COG0469 238 EASDGIMVARGDLGV 252 (477)
T ss_pred HHCCCEEEEECCCCC
T ss_conf 863832998656505
No 453
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=59.99 E-value=12 Score=17.11 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHCCCCCE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---EEEEEEC
Q ss_conf 99899999887531045377--744256413677666889999855899999999985027906---9998611
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNE--INLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP---VTVKCRI 125 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~--idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p---vsvK~Rl 125 (322)
+....+.++.+++.+.||.. ||++.=|..||+.. ...+|.+.+.+.+++| ||+|-..
T Consensus 71 ~S~~~L~~~~~~l~~~g~~I~NiD~tIi~e~Pki~~------------~~~~i~~~ls~~L~i~~~~IsiKAtT 132 (153)
T cd00554 71 DSRILLEEALKLIREKGYEIVNIDITIIAERPKISP------------YREAMRANLAELLGIPPSRVNIKATT 132 (153)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHH------------HHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 869999999999998299478601899905764289------------99999999999969996648999962
No 454
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=59.32 E-value=13 Score=17.03 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCEEEECCC-CCCH
Q ss_conf 8999999828982998170-3324
Q gi|254781167|r 8 HYRFFARLLTNNALLYTEM-IVAD 30 (322)
Q Consensus 8 ~fR~l~r~~~~~~~~~TEm-i~a~ 30 (322)
-|+... ..|+|..+..|- ++++
T Consensus 18 ~l~~ai-~~GADaVY~G~~~~~~R 40 (347)
T COG0826 18 DLKAAI-AAGADAVYIGEKEFGLR 40 (347)
T ss_pred HHHHHH-HCCCCEEEECCCCCCCC
T ss_conf 999999-76999899577501154
No 455
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=58.64 E-value=9.9 Score=17.83 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=72.6
Q ss_pred HHCCCCCCCEEEEEECCC-HHHH---HHHHHHHHCCCCCEEEECCCCCHHHHHH----HHHH--HHHHHHHHHHHHHHHH
Q ss_conf 302745784699982699-8999---9988753104537774425641367766----6889--9998558999999999
Q gi|254781167|r 41 LGFSTQEKPLALQIGGAD-ISKL---VEAAKIVEDFGYNEINLNVGCPSARVHE----GSFG--ACLMLNPDIVGDCIAA 110 (322)
Q Consensus 41 ~~~~~~e~p~~~Ql~g~~-p~~~---~~aa~~~~~~g~~~idlN~GCP~~~v~~----~g~G--aaLl~~p~~~~~iv~~ 110 (322)
+.+.+.+-|+...+..++ +..+ .++.+.+.+.+ .+.|=--|.+|.-.. .|.| ..+.++|+...++++.
T Consensus 64 v~f~~g~GP~~~~~~~~~~~~~l~~v~~~i~~~~~~~--~vpLIGFaGaPwTla~Ymieg~~sk~~~~~~pe~~~~LL~~ 141 (306)
T cd00465 64 AFRYYSQAPSVPEIDEEEDPFREAPALEHITAVRSLE--EFPTAGAAGGPFTFTHHSMSMGDALMALYERPEAMHELIEY 141 (306)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 4795075898998774056664478999999986357--86237645865999999983810899988799999999999
Q ss_pred HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH--HCCCCCC-CCCCCCCHHHHHHHHHH--H
Q ss_conf 85027906999861134566532201455432000122012100135664--0257742-12276610467876667--3
Q gi|254781167|r 111 MCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAIL--KGLSPKD-NRKIPNLDYDIVYEIKK--E 185 (322)
Q Consensus 111 ~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~--~g~s~~~-~~~~~~~~~~~i~~l~~--~ 185 (322)
+.++ +.++++.-.++|+++|.|+=--+-+ ..++|.. +.+. +.+.+++.+ .
T Consensus 142 lt~~---------------------~i~yl~~Qi~aGAdavqiFDSWag~~~~~L~p~~~~~f~----lp~~~~I~~~~~ 196 (306)
T cd00465 142 LTEF---------------------ILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFA----LPAYKKVAEYKA 196 (306)
T ss_pred HHHH---------------------HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH----HHHHHHHHHHHC
T ss_conf 9999---------------------999999999848899997434334231103999999999----999999999745
Q ss_pred CCCCCCCC--CCCCCCHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf 88753025--7777899898887420352344122000124
Q gi|254781167|r 186 NPDLFIGL--NGGLEDMSQALKILPSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 186 ~~~~~i~~--NGdi~~~~~a~~~l~~~dgvMigRga~~~P~ 224 (322)
.+++|+|+ .|+-.+.-+... ..|+|.+-+--.. .+|.
T Consensus 197 ~~~vPiI~F~~G~~~~~l~~~~-~~g~d~i~lD~~~-~d~~ 235 (306)
T cd00465 197 AGEVPIVHHSCYDAADLLEEMI-QLGVDVISFDMTV-NEPK 235 (306)
T ss_pred CCCCCEEEEECCCHHHHHHHHH-HCCCCEEEEECCC-CCHH
T ss_conf 7999889983286677899998-6198679973677-7899
No 456
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=58.48 E-value=11 Score=17.49 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCC
Q ss_conf 75302577778998988874--20352344122000
Q gi|254781167|r 188 DLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYK 221 (322)
Q Consensus 188 ~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~ 221 (322)
+++|.+ ||=.+.+.+.+.+ +++||++||++.+.
T Consensus 204 ~i~IlY-GGSVn~~N~~~i~~~~~vDG~LVGgASL~ 238 (251)
T PRK00042 204 KVRILY-GGSVKPDNAAELFAQPDIDGALVGGASLK 238 (251)
T ss_pred CCCEEE-ECCCCHHHHHHHHCCCCCCEEEECHHHCC
T ss_conf 753887-17789989999966889997985158679
No 457
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=58.20 E-value=10 Score=17.77 Aligned_cols=157 Identities=15% Similarity=0.261 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 74578469998269989999988753104537774425641367766688999985589999999998502790699986
Q gi|254781167|r 44 STQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 44 ~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
...+.++.+-|+++||.....++.+.......+||==+ +.-|+--++|..++ .++.++..-++.|=-|||
T Consensus 52 ~~~~~avSVGLGaGDp~Q~~~Va~Ia~~~~P~HVNQvF-------t~ag~sr~~L~~~~---T~vN~LvsPTG~~G~VkI 121 (236)
T TIGR03581 52 KEIDNAVSVGLGAGDPNQSAMVADISAHTQPQHINQVF-------TGVGTSRALLGQAD---TVINGLVSPTGTPGLVNI 121 (236)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC-------CHHHHHHHHHCCCC---EEEEEEECCCCCCCEEEE
T ss_conf 74788568842799979999999999874976546415-------40477788737987---089887758897516994
Q ss_pred ECCCCC---CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--C
Q ss_conf 113456---65322014554320001220121001356640257742122766104678766673887530257777--8
Q gi|254781167|r 124 RIGVDD---QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGL--E 198 (322)
Q Consensus 124 RlG~~~---~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi--~ 198 (322)
-.|=-. .+........+.++.+.|++.+-.-+= +|++..+ .+..+++..... ++.+-.-|+| .
T Consensus 122 sTGp~Ss~~~~~~V~vetAiaml~dmG~~SiKffPm----~Gl~~le-------E~~avA~aca~~-g~~lEPTGGIdl~ 189 (236)
T TIGR03581 122 STGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPM----GGLKHLE-------EYAAVAKACAKH-GFYLEPTGGIDLD 189 (236)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEEC----CCCCCHH-------HHHHHHHHHHHC-CEEECCCCCCCHH
T ss_conf 567665568885513999999999739882667506----7734199-------999999999976-9156667985677
Q ss_pred CHHHHHH-HHH-CCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9989888-742-0352344122000124399999
Q gi|254781167|r 199 DMSQALK-ILP-SVDGVMIGRAAYKNSAMLTTVD 230 (322)
Q Consensus 199 ~~~~a~~-~l~-~~dgvMigRga~~~P~if~~I~ 230 (322)
+.+...+ +++ |+.-|| |.|++.|-
T Consensus 190 N~~~I~~i~ldaGv~kvi--------PHIYssII 215 (236)
T TIGR03581 190 NFEEIVQIALDAGVEKVI--------PHVYSSII 215 (236)
T ss_pred HHHHHHHHHHHCCCCEEC--------CCHHHHHH
T ss_conf 799999999984998543--------52102231
No 458
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=57.21 E-value=14 Score=16.78 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=82.1
Q ss_pred EEEEEECCCHHHHHHHHHHHH-CC----------------------CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 699982699899999887531-04----------------------5377744256413677666889999855899999
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVE-DF----------------------GYNEINLNVGCPSARVHEGSFGACLMLNPDIVGD 106 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~-~~----------------------g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~ 106 (322)
+++==+.++|+...+.|+.+- ++ |.|..=+--.||- .--.|| .+.=
T Consensus 124 ~iiFSG~snp~La~~Ia~~Lg~~LG~~~l~rFsDGEi~V~i~EsVRG~DVfIIQSt~~P-------vNdnLM----ELLI 192 (443)
T PTZ00145 124 AILFSGSSNPLLSKDIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPP-------VNENLI----ELLL 192 (443)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCC-------CCHHHH----HHHH
T ss_conf 59996899989999999986896311024100697089986463247847998999998-------203699----9999
Q ss_pred HHHHHHCCCCEEEEEEEE-CCCCC------CCCCCCHHHHHHHHCCCCCCHH---HHHHHHHHHHCCC---CCCCCCCCC
Q ss_conf 999985027906999861-13456------6532201455432000122012---1001356640257---742122766
Q gi|254781167|r 107 CIAAMCKALSIPVTVKCR-IGVDD------QIPAVALRNLVKSIKKSGVNGI---WIHARKAILKGLS---PKDNRKIPN 173 (322)
Q Consensus 107 iv~~~~~~~~~pvsvK~R-lG~~~------~~~~~~~~~~~~~~~~~g~~~i---tiH~Rt~~~~g~s---~~~~~~~~~ 173 (322)
++.+++.+.-..||+=+= .||-- .........++++++.+|++.| -+|. .++|+.++ |-++.|..+
T Consensus 193 mIDA~KRASA~rITAVIPYfGYARQDRK~~~R~PISAKlVAnLL~~aGaDRVITmDLHa-~QIQGFFd~nIPVDnL~a~p 271 (443)
T PTZ00145 193 MISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHS-GQIQGFFGPRVPVDNLEAQL 271 (443)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCC-HHHCCCCCCCCCCCCCCCCH
T ss_conf 99997661567469991477524687878999870599999999863988499970685-67624258998621365247
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 104678766673887530257777899898887
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKI 206 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~ 206 (322)
.-.+++... ...+++|+ .=|.-....|...
T Consensus 272 ll~~y~~~~--~l~n~VVV-SPD~GgvkRAr~~ 301 (443)
T PTZ00145 272 IGLDYFTKK--DLYKPVIV-SPDAGGVYRARKF 301 (443)
T ss_pred HHHHHHHHC--CCCCCEEE-CCCCCHHHHHHHH
T ss_conf 679999845--99888898-3899749999999
No 459
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.16 E-value=14 Score=16.78 Aligned_cols=39 Identities=13% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 67876667388753025777789989888742-035234412
Q gi|254781167|r 177 DIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 177 ~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
+.+.++++..|..+|.. .+.|.+++.+.++ |+|-||+-.
T Consensus 187 ~ai~~~r~~~~~~kIeV--Ev~sl~q~~ea~~~gaDiImLDN 226 (288)
T PRK07896 187 AALRAVRAAAPDLPCEV--EVDSLEQLDEVLAEGAELILLDN 226 (288)
T ss_pred HHHHHHHHHCCCCEEEE--EECCHHHHHHHHHCCCCEEEECC
T ss_conf 99999998589961999--97979999998746999999779
No 460
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=56.80 E-value=12 Score=17.28 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=16.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEE
Q ss_conf 7876667388753025777789989888742-03523441
Q gi|254781167|r 178 IVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIG 216 (322)
Q Consensus 178 ~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMig 216 (322)
.|.++++..|..+-+ -=.+.|.+++.+.++ |+|=||+-
T Consensus 177 Av~~aR~~~~~~~kI-EVEvesle~~~eAl~agaDiImLD 215 (280)
T COG0157 177 AVRRARAAAPFTKKI-EVEVESLEEAEEALEAGADIIMLD 215 (280)
T ss_pred HHHHHHHHCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEC
T ss_conf 999999758998628-997499999999997499999976
No 461
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=56.12 E-value=14 Score=16.66 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECC----CCCCCC-------CCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHC
Q ss_conf 5589999999998502790699986113----456653-------2201455432000122012-----10013566402
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKCRIG----VDDQIP-------AVALRNLVKSIKKSGVNGI-----WIHARKAILKG 162 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG----~~~~~~-------~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g 162 (322)
.|-.+..++++-... .+++| -.-|| ..+..+ +....+..+-++++|+|.+ |+||-. ++
T Consensus 112 eNI~~tk~vve~ah~-~gv~V--EaElG~i~G~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~y---k~ 185 (307)
T PRK05835 112 ENLELTSKVVKMAHN-AGVSV--EAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAF---KF 185 (307)
T ss_pred HHHHHHHHHHHHHHH-CCCEE--EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCC---CC
T ss_conf 999999999999987-09869--9974312566777676653223479999999998747079999866557777---77
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 5774212276610467876667388753025777789989888742035234412200012439999998719988
Q gi|254781167|r 163 LSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLT 238 (322)
Q Consensus 163 ~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~~~ 238 (322)
...|.+||+.+.++++.. ++|++.-|+=--+++..+.+....|=+- |..+-| ..++++.+..+-.
T Consensus 186 ------~g~p~l~~~~L~~I~~~~-~vPLVLHGgSgvpd~~~~~~~~~gg~~~--~~~G~~--~e~i~~ai~~Gv~ 250 (307)
T PRK05835 186 ------KGEPKLDFERLQEVKRLT-NIPLVLHGASAIPDNVRKSYLDAGGDLK--GSKGVP--FEFLQESVKGGIN 250 (307)
T ss_pred ------CCCCCCCHHHHHHHHHCC-CCCEEECCCCCCCHHHHHHHHHCCCCCC--CCCCCC--HHHHHHHHHCCCE
T ss_conf ------899767889999998417-9987956898760788888750266567--888999--9999999986976
No 462
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=56.12 E-value=14 Score=16.66 Aligned_cols=92 Identities=22% Similarity=0.225 Sum_probs=50.5
Q ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHH---CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 069998611345665322014554320---00122012100135664025774212276610467876667388753025
Q gi|254781167|r 117 IPVTVKCRIGVDDQIPAVALRNLVKSI---KKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGL 193 (322)
Q Consensus 117 ~pvsvK~RlG~~~~~~~~~~~~~~~~~---~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~ 193 (322)
+-||+-..=|.=...+.+.+++.++-+ -+.|+=.+-||+=- . ..| .+++.+..+... ++-|+..
T Consensus 120 ~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvLDi~aVG-t----------~~G-~~~E~l~~~~~~-s~~pVll 186 (229)
T COG1411 120 IVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVLDIGAVG-T----------KSG-PDYELLTKVLEL-SEHPVLL 186 (229)
T ss_pred EEEEEECCCCEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC-C----------CCC-CCHHHHHHHHHH-CCCCEEE
T ss_conf 69999647884237771048999998752578884999755433-4----------669-999999999873-1375344
Q ss_pred CCCCCCHHHHHHHH-HCCCCEEEECCCCC
Q ss_conf 77778998988874-20352344122000
Q gi|254781167|r 194 NGGLEDMSQALKIL-PSVDGVMIGRAAYK 221 (322)
Q Consensus 194 NGdi~~~~~a~~~l-~~~dgvMigRga~~ 221 (322)
-|+|.-.|+-..+. -||+||.+|++...
T Consensus 187 GGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 187 GGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred CCCCCCHHHHHHHHCCCCCEEEEHHHHHC
T ss_conf 48758577789986179854654335652
No 463
>KOG0623 consensus
Probab=56.00 E-value=14 Score=16.65 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=5.6
Q ss_pred HCCCCEEEECCC
Q ss_conf 203523441220
Q gi|254781167|r 208 PSVDGVMIGRAA 219 (322)
Q Consensus 208 ~~~dgvMigRga 219 (322)
+|+|-|-||.-|
T Consensus 348 SGADKvSIGsDA 359 (541)
T KOG0623 348 SGADKVSIGSDA 359 (541)
T ss_pred CCCCEEEECHHH
T ss_conf 478613105067
No 464
>pfam07071 DUF1341 Protein of unknown function (DUF1341). This family consists of several hypothetical bacterial proteins of around 220 residues in length. The function of this family is unknown.
Probab=55.95 E-value=12 Score=17.13 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=61.9
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 45784699982699899999887531045377744256413677666889999855899999999985027906999861
Q gi|254781167|r 45 TQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
..++++.+-|+++||.....++++.......+||==+ +.-|+--++|..++- ++.++..-++.|=-|||-
T Consensus 53 ~~~~~vSVGLGaGDp~Q~~~Va~Ia~~~~P~HVNQvF-------t~ag~sr~~Lg~~~T---~vN~LvsPTG~~G~VkIs 122 (218)
T pfam07071 53 EIDNAISVGLGAGDPNQSAMVADISRHVQPQHINQVF-------TGVGTSRALLGQNDT---VVNGLVSPTGKVGEVKIS 122 (218)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC-------CCHHHHHHHHCCCCE---EEEEEECCCCCCCEEEEC
T ss_conf 4898568842899979999999999874976546415-------422777887079861---787666578865358835
Q ss_pred CCCCC---CCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 13456---65322014554320001220121
Q gi|254781167|r 125 IGVDD---QIPAVALRNLVKSIKKSGVNGIW 152 (322)
Q Consensus 125 lG~~~---~~~~~~~~~~~~~~~~~g~~~it 152 (322)
.|=-. .+........+.++.+.|++.+-
T Consensus 123 TGp~Ss~~~~~iV~vetAiaml~dmG~~SiK 153 (218)
T pfam07071 123 TGPLSSQKEDAIVPVETAIAMLKDMGGSSVK 153 (218)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 6775445777513099999999972988056
No 465
>KOG3111 consensus
Probab=55.83 E-value=14 Score=16.63 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=66.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCEE--EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEEEEC
Q ss_conf 6999826998999998875310453777--44256413677666889999855899999999985027906--9998611
Q gi|254781167|r 50 LALQIGGADISKLVEAAKIVEDFGYNEI--NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIP--VTVKCRI 125 (322)
Q Consensus 50 ~~~Ql~g~~p~~~~~aa~~~~~~g~~~i--dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~p--vsvK~Rl 125 (322)
+++.|..+|-..+++-++.+.+.|+|.+ |+==|-=+|.++ .| .-+|+++++.++.| +-|-+=+
T Consensus 7 I~pSIL~~dfanL~~E~~~~~~~GadwlHlDVMDg~FVpNiT---~G----------~pvV~slr~~~~~~~ffD~HmMV 73 (224)
T KOG3111 7 IAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNIT---FG----------PPVVESLRKHTGADPFFDVHMMV 73 (224)
T ss_pred ECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC---CC----------HHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 253665130678999999999749875878601471047743---36----------18899998525888523678764
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 34566532201455432000122012100135664025774212276610467876667388753025777789989888
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
++ -.+++.-+.++|++.+|+|.--. |- --+.+.++++..-..-+..|-+ ++.+++..
T Consensus 74 -----~~---Peq~v~~~a~agas~~tfH~E~~---------q~-----~~~lv~~ir~~gmk~G~alkPg-T~Ve~~~~ 130 (224)
T KOG3111 74 -----EN---PEQWVDQMAKAGASLFTFHYEAT---------QK-----PAELVEKIREKGMKVGLALKPG-TPVEDLEP 130 (224)
T ss_pred -----CC---HHHHHHHHHHCCCCEEEEEEEEC---------CC-----HHHHHHHHHHCCCEEEEEECCC-CCHHHHHH
T ss_conf -----69---88876799864775699986432---------57-----8999999997497566874899-95899997
Q ss_pred HHHCCCCEEE
Q ss_conf 7420352344
Q gi|254781167|r 206 ILPSVDGVMI 215 (322)
Q Consensus 206 ~l~~~dgvMi 215 (322)
..+.+|-|+|
T Consensus 131 ~~~~~D~vLv 140 (224)
T KOG3111 131 LAEHVDMVLV 140 (224)
T ss_pred HHHHCCEEEE
T ss_conf 6410257999
No 466
>PRK06256 biotin synthase; Validated
Probab=55.55 E-value=15 Score=16.59 Aligned_cols=132 Identities=20% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 998999998875310453777442564--136776668899998558999999999850279069998611345665322
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGC--PSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GC--P~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~ 134 (322)
-+++++.++|+.+.+.|+..+-|=.|. |.. .+.+.+.++++++++.+++.|.+- +|. -+
T Consensus 90 l~~eeI~~~a~~a~~~G~~~~~lvtsg~~~~~------------~~~e~v~~~i~~Ik~~~~l~i~~s--lG~---l~-- 150 (325)
T PRK06256 90 LDIEEIVEAAKEAIENGAGRFCIVASGRGPSG------------REVDQVIEAVKAIKEETDLEICAC--LGL---LT-- 150 (325)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCH------------HHHHHHHHHHHHHHHCCCEEEEEE--CCC---CC--
T ss_conf 99999999999999869988999860458976------------789999999999862289368873--488---99--
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH----HHHHHHHHHCCCCCCCCCCCC----CCHHHHHHH
Q ss_conf 014554320001220121001356640257742122766104----678766673887530257777----899898887
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDY----DIVYEIKKENPDLFIGLNGGL----EDMSQALKI 206 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~----~~i~~l~~~~~~~~i~~NGdi----~~~~~a~~~ 206 (322)
.+-++.+.++|++.....--|. ...+ |+ - .+.-.| +.+..+++.- +++ ..|.| .|.+|-.++
T Consensus 151 --~e~~~~LkeAGvd~y~~nlETs-~~~f-~~--i-~~tht~~~Rl~ti~~a~~aG--i~v-csG~i~GlGEt~edrve~ 220 (325)
T PRK06256 151 --EEQAERLKEAGVDRYNHNLETS-RSYF-PN--V-VTTHTYEDRVDTCEMVKAAG--IEP-CSGGIIGMGETLEDRAEH 220 (325)
T ss_pred --HHHHHHHHHCCCCEECCCCCCC-HHHC-CC--C-CCCCCHHHHHHHHHHHHHCC--CCC-CCCEEECCCCCHHHHHHH
T ss_conf --9999999986998886664406-8763-88--6-89988999999999999859--964-664376689998999999
Q ss_pred H---H--CCCCEEEEC
Q ss_conf 4---2--035234412
Q gi|254781167|r 207 L---P--SVDGVMIGR 217 (322)
Q Consensus 207 l---~--~~dgvMigR 217 (322)
+ . +.|.|=|.+
T Consensus 221 l~~Lr~l~~~sipin~ 236 (325)
T PRK06256 221 AFFLKELDADSIPINF 236 (325)
T ss_pred HHHHHCCCCCEEECCC
T ss_conf 9999719998895467
No 467
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=54.46 E-value=12 Score=17.23 Aligned_cols=15 Identities=27% Similarity=0.756 Sum_probs=7.2
Q ss_pred HHHHHHHCCCCCCHH
Q ss_conf 455432000122012
Q gi|254781167|r 137 RNLVKSIKKSGVNGI 151 (322)
Q Consensus 137 ~~~~~~~~~~g~~~i 151 (322)
.|++++|.++|.+-+
T Consensus 116 ~EvL~~LK~aGL~Sm 130 (331)
T TIGR00423 116 KEVLKRLKKAGLDSM 130 (331)
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999888503567
No 468
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=53.49 E-value=16 Score=16.37 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHH
Q ss_conf 875302577778998988874-20352344122000124
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSA 224 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~ 224 (322)
+...+.+.|||. .+.+.... .|.|.+-+|......|+
T Consensus 238 ~~~~i~~SGgi~-~~~i~~~a~~gvd~i~iG~~~~~~~~ 275 (281)
T cd00516 238 PRVKIEASGGLD-EENIRAYAETGVDVFGVGTLLHSAPP 275 (281)
T ss_pred CCEEEEEECCCC-HHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 977999979999-99999999679899993822178841
No 469
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=52.98 E-value=16 Score=16.31 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHC
Q ss_conf 77789989888742035234412200012439-99999871
Q gi|254781167|r 195 GGLEDMSQALKILPSVDGVMIGRAAYKNSAML-TTVDEYFS 234 (322)
Q Consensus 195 Gdi~~~~~a~~~l~~~dgvMigRga~~~P~if-~~I~~~l~ 234 (322)
|-.....|...+.-....+-|+|+..++|-=+ ..+++.+.
T Consensus 155 Gk~~~kkdl~~i~~a~g~~YVA~~~~a~~~~l~~~i~kA~~ 195 (300)
T PRK11864 155 GKRERKKPVADIMAAHGVPYVATASIAYPEDFIRKLKKAAE 195 (300)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC
T ss_conf 98789989999999759987999855699999999999971
No 470
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=52.94 E-value=16 Score=16.31 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=102.9
Q ss_pred ECCCHHHHHHH-HHHHHCCCCCEE---E-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CEEEEEEE
Q ss_conf 26998999998-875310453777---4-4256413677666889999855899999999985027------90699986
Q gi|254781167|r 55 GGADISKLVEA-AKIVEDFGYNEI---N-LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL------SIPVTVKC 123 (322)
Q Consensus 55 ~g~~p~~~~~a-a~~~~~~g~~~i---d-lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~------~~pvsvK~ 123 (322)
+.|=|+....- ++...+.|.|.+ | || .+++-.+.-+-++.--+.+ ..-|+=+.
T Consensus 639 YtnYPDNvv~~Fv~qa~~~GiD~FRvFDsLN----------------~l~~l~l~~dAv~~~gkv~EAAicYtGDil~~~ 702 (1169)
T TIGR01235 639 YTNYPDNVVKKFVKQAAQSGIDIFRVFDSLN----------------WLENLKLGMDAVKEAGKVVEAAICYTGDILDPA 702 (1169)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCC----------------CCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCC
T ss_conf 2477534899999988846830787001113----------------321020163677750997999975200326888
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH-
Q ss_conf 1134566532201455432000122012100135664025774212276610467876667388753025777789989-
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ- 202 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~- 202 (322)
|-=+ +-.+..++|..++.+|+..|.| +-|-+-+. |.|.+..|..|++..|++||-. -|.++
T Consensus 703 r~KY----dL~YYt~lA~eL~~aGaHIL~i---KDMAGlLK-------P~AAk~L~~ALre~~PD~PiH~----HTHDtS 764 (1169)
T TIGR01235 703 RKKY----DLKYYTNLAEELVKAGAHILGI---KDMAGLLK-------PAAAKLLIKALREKIPDLPIHL----HTHDTS 764 (1169)
T ss_pred CCCC----CHHHHHHHHHHHHHCCCCEEEE---HHHHCCCH-------HHHHHHHHHHHHHCCCCCCEEE----ECCCCH
T ss_conf 9743----7788999999999709803430---10112442-------8999999999973279985686----266612
Q ss_pred ------HHHHH-HCCCCEEEE----CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ------88874-203523441----2200012439999998719988889998899999999999999999999852287
Q gi|254781167|r 203 ------ALKIL-PSVDGVMIG----RAAYKNSAMLTTVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAARHLHSGG 271 (322)
Q Consensus 203 ------a~~~l-~~~dgvMig----Rga~~~P~if~~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~ 271 (322)
..+|. .|+|-|=+| -|.=.-|.+=+ +-+.+.+....+.-..... ..+..|++-....+....
T Consensus 765 G~ava~~~aaveAGvDvvDvAv~smSG~TSQPS~~a-~~~aL~G~~~dpgln~~~v------~~ls~YWe~~R~~Ya~FE 837 (1169)
T TIGR01235 765 GAAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGA-LVAALEGSERDPGLNVEDV------RELSAYWEEVRKLYAAFE 837 (1169)
T ss_pred HHHHHHHHHHHHCCCCEEHHHHHHHCCCCHHHHHHH-HHHHHCCCCCCCCCCHHHH------HHHHHHHHHHHHHHHHHH
T ss_conf 689999999987588611456764104500333899-9997278989888898999------898788999974421111
Q ss_pred CHHHHHHHHH-HHHCCCCCH
Q ss_conf 6799899899-987389998
Q gi|254781167|r 272 KLQQITRHMI-GLFHGFPNS 290 (322)
Q Consensus 272 ~i~~irKhl~-~y~kGlpga 290 (322)
+...|+-+-. =|.|=+||+
T Consensus 838 stt~lKsP~~evY~hE~PGG 857 (1169)
T TIGR01235 838 STTDLKSPDSEVYLHEIPGG 857 (1169)
T ss_pred CCCCCCCCCCCCCCCCCCCC
T ss_conf 03678877854333578850
No 471
>PRK10116 universal stress protein UspC; Provisional
Probab=52.91 E-value=16 Score=16.30 Aligned_cols=102 Identities=12% Similarity=0.165 Sum_probs=56.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEECCC-CCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 99982699899999887531045377744256-4136776668899998558-----99999999985027906999861
Q gi|254781167|r 51 ALQIGGADISKLVEAAKIVEDFGYNEINLNVG-CPSARVHEGSFGACLMLNP-----DIVGDCIAAMCKALSIPVTVKCR 124 (322)
Q Consensus 51 ~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~G-CP~~~v~~~g~GaaLl~~p-----~~~~~iv~~~~~~~~~pvsvK~R 124 (322)
++.+.-.....+.+|++++..++...-=+... -|. .-.+++..++.+- +.+.+.++.+.+..+.|+. ++.
T Consensus 9 AvDlS~~S~~~i~kA~~lA~~~~AklslihV~~~~~---~y~~~~~~~~~d~~~~~~e~a~~~L~~l~~~~~~pi~-~~~ 84 (142)
T PRK10116 9 AVAVTPESQQLLAKAVSIARPVNGKISLITLASDPE---MYNQFAAPMLEDLRSVMQEETQSFLDELIQKADYPIE-KTF 84 (142)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCHH---HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEE
T ss_conf 941885069999999999998199899999935766---6521022137889999999999999999987499815-899
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHH--HHHHHHHH
Q ss_conf 13456653220145543200012201210--01356640
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWI--HARKAILK 161 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~iti--H~Rt~~~~ 161 (322)
+++.+ .. .++.+.+++.++|.|.+ |+|+.+.+
T Consensus 85 v~~G~--~~---~~I~~~a~e~~~DLIV~G~Hg~~~~~~ 118 (142)
T PRK10116 85 IAYGE--LS---EHILEVCRKHHFDLVICGNHNHSFFSR 118 (142)
T ss_pred EEECC--HH---HHHHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf 99658--89---999999999699999990598548999
No 472
>pfam09863 DUF2090 Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=52.80 E-value=16 Score=16.29 Aligned_cols=86 Identities=17% Similarity=0.347 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCC----HHHHHHHHHHHC-CC---CCCCCCCCCCCHHHHHHHH------HCCCCEEEECCCCCHHHHHH
Q ss_conf 2577421227661----046787666738-87---5302577778998988874------20352344122000124399
Q gi|254781167|r 162 GLSPKDNRKIPNL----DYDIVYEIKKEN-PD---LFIGLNGGLEDMSQALKIL------PSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 162 g~s~~~~~~~~~~----~~~~i~~l~~~~-~~---~~i~~NGdi~~~~~a~~~l------~~~dgvMigRga~~~P~if~ 227 (322)
|..| ++...+|. .|+-+.++.+.. |. +++-|.+ -..++...-+ +.|-|++|||.++++|+-
T Consensus 205 GI~P-DWWKLep~~s~~~W~~i~~~I~~~Dp~crGvvvLGl~--Ap~e~L~~~F~~Aa~~p~vkGFAVGRTIF~e~a~-- 279 (310)
T pfam09863 205 GIKP-DWWKLEPLASAAAWQQIDALIEERDPYCRGVVLLGLD--APEEELAAGFAAAAAFPLVKGFAVGRTIFADPAR-- 279 (310)
T ss_pred CCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC--CCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHH--
T ss_conf 9998-6354588788999999999998439874058987799--9889999999998469974133134045388999--
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999871998888999889999999999999999999
Q gi|254781167|r 228 TVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAA 264 (322)
Q Consensus 228 ~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~ 264 (322)
..+.+.-. .......+..+|...+.
T Consensus 280 ---~Wl~G~i~---------D~~ai~~~a~ny~~Li~ 304 (310)
T pfam09863 280 ---AWLAGEID---------DEELIAEVAANYARLID 304 (310)
T ss_pred ---HHHCCCCC---------HHHHHHHHHHHHHHHHH
T ss_conf ---99828998---------89999999999999999
No 473
>PRK08187 pyruvate kinase; Validated
Probab=52.65 E-value=7.5 Score=18.72 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHH---HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4776089789830274578469998269989999988---7531045377744256413677666889999855899999
Q gi|254781167|r 30 DAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAA---KIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGD 106 (322)
Q Consensus 30 ~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa---~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~ 106 (322)
+.++..+...++...+..++.- |+-.=|.+.+.-. +-+.+.|.|..=|||.-=.+-. ...+.+
T Consensus 115 ~~lL~~~~~~LlG~~~~~r~tr--IMVTlp~EAa~D~~~ir~Ll~AGMdVARINcAHg~pe~------------w~~mI~ 180 (606)
T PRK08187 115 DRLLDEHAEALLGPPPSGRPTR--IMVTLPTEAATDPDLVRRLLKRGMDIARINCAHDDPEA------------WRAMIE 180 (606)
T ss_pred HHHHHHHHHHHCCCCCCCCCEE--EEEECCHHHHCCHHHHHHHHHCCCCEEEEECCCCCHHH------------HHHHHH
T ss_conf 9999998998669999999637--99968802206979999999769987998768899999------------999999
Q ss_pred HHHHHHCCCCEEEEE-------EEECC
Q ss_conf 999985027906999-------86113
Q gi|254781167|r 107 CIAAMCKALSIPVTV-------KCRIG 126 (322)
Q Consensus 107 iv~~~~~~~~~pvsv-------K~RlG 126 (322)
-|++..+.++.|+.+ |+|+|
T Consensus 181 ~VR~Aa~~~Gr~~~IlmDL~GPKIRtG 207 (606)
T PRK08187 181 HVRTAEEETGRRCRVLMDLAGPKIRTG 207 (606)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCEEC
T ss_conf 999999972994179987799831131
No 474
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=51.32 E-value=17 Score=16.13 Aligned_cols=162 Identities=19% Similarity=0.314 Sum_probs=82.4
Q ss_pred HHHCC-CCCCCEEEEEECCCHHHHH------HHH-HHHHCCCCC-EEEECCCCCHHHH----HHHHHHHHHH--------
Q ss_conf 83027-4578469998269989999------988-753104537-7744256413677----6668899998--------
Q gi|254781167|r 40 ILGFS-TQEKPLALQIGGADISKLV------EAA-KIVEDFGYN-EINLNVGCPSARV----HEGSFGACLM-------- 98 (322)
Q Consensus 40 ~~~~~-~~e~p~~~Ql~g~~p~~~~------~aa-~~~~~~g~~-~idlN~GCP~~~v----~~~g~GaaLl-------- 98 (322)
.++.+ ....|+++|..-+....+. .-+ .+++.++.- .+.|-=| ++... .+.|+.|-++
T Consensus 34 ileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg-~~~~~~~~ai~~GFsSvMiDgS~~p~e 112 (286)
T COG0191 34 ILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHG-ASFEDCKQAIRAGFSSVMIDGSHLPFE 112 (286)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHCCCCEEEECCCCCCHH
T ss_conf 9999998589989994611887705288999999999997799889977789-999999999756882587538757788
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCCC----------CCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHC
Q ss_conf 55899999999985027906999861134-56653----------2201455432000122012-----10013566402
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKCRIGV-DDQIP----------AVALRNLVKSIKKSGVNGI-----WIHARKAILKG 162 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG~-~~~~~----------~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g 162 (322)
.|-....+.|+-... .+ |||-.-||. ...++ +....+-.+.++..|+|.| ++||-. ++
T Consensus 113 ENi~~tkevv~~ah~-~g--vsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Y---k~ 186 (286)
T COG0191 113 ENIAITKEVVEFAHA-YG--VSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVY---KP 186 (286)
T ss_pred HHHHHHHHHHHHHHH-CC--CCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCEEEEECCCCCCCC---CC
T ss_conf 899999999999998-29--8189985133575677535666655079999999986128665611003566678---89
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHH-CCCCEEEE
Q ss_conf 577421227661046787666738875302577778-9989888742-03523441
Q gi|254781167|r 163 LSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE-DMSQALKILP-SVDGVMIG 216 (322)
Q Consensus 163 ~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~-~~~~a~~~l~-~~dgvMig 216 (322)
..|.++.+.+.++++..+ +|++.-|+=- +.++..+..+ |+-=|=|.
T Consensus 187 -------~~p~L~f~~L~~i~~~~~-~PlVlHGgSGip~eeI~~aI~~GV~KvNi~ 234 (286)
T COG0191 187 -------GNPKLDFDRLKEIQEAVS-LPLVLHGGSGIPDEEIREAIKLGVAKVNID 234 (286)
T ss_pred -------CCCCCCHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHCCEEEEEC
T ss_conf -------999889799999999858-987976799999999999997295588547
No 475
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=51.28 E-value=16 Score=16.23 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 99999999850279069998611345665322014554320001220121
Q gi|254781167|r 103 IVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW 152 (322)
Q Consensus 103 ~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it 152 (322)
.+..+++|....-.+-|-|-++.-||++ ++ +.+++.++++||..|+
T Consensus 386 IV~ALi~AA~nGKqVtvlVELkARFDEE-~N---I~WAk~LE~AGvhVVy 431 (696)
T COG0855 386 IVRALIDAAENGKQVTVLVELKARFDEE-AN---IHWAKRLERAGVHVVY 431 (696)
T ss_pred HHHHHHHHHHCCCEEEEEEEEHHHCCHH-HH---HHHHHHHHHCCCEEEE
T ss_conf 9999999998098689999972113724-41---5899999867968996
No 476
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=50.86 E-value=17 Score=16.08 Aligned_cols=58 Identities=31% Similarity=0.407 Sum_probs=29.0
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 78469998269989999988753104537774425641367766688999985589999999998502790699986113
Q gi|254781167|r 47 EKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIG 126 (322)
Q Consensus 47 e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG 126 (322)
.-|++.-|-=. +.....++ ++|.|.+-||=|== ...+++.+++++.++ .++|+ |+|
T Consensus 74 ~vPLVaDiHf~-~rla~~~~----~~g~~k~RINPGNi--------------g~~~~v~~vVe~Ak~-~g~pi----RIG 129 (361)
T COG0821 74 NVPLVADIHFD-YRLALEAA----ECGVDKVRINPGNI--------------GFKDRVREVVEAAKD-KGIPI----RIG 129 (361)
T ss_pred CCCEEEEEECC-HHHHHHHH----HCCCCEEEECCCCC--------------CCHHHHHHHHHHHHH-CCCCE----EEE
T ss_conf 99879873056-89999756----42742698778656--------------736779999999997-59987----995
Q ss_pred CC
Q ss_conf 45
Q gi|254781167|r 127 VD 128 (322)
Q Consensus 127 ~~ 128 (322)
.+
T Consensus 130 VN 131 (361)
T COG0821 130 VN 131 (361)
T ss_pred CC
T ss_conf 26
No 477
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=50.48 E-value=17 Score=16.04 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCC
Q ss_conf 998999998875310-45377744256413677666889999855899999999985027-9069998611345665322
Q gi|254781167|r 57 ADISKLVEAAKIVED-FGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~-~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~ 134 (322)
.+|+.+++.++...+ +||+.+-+..|...+ +.-.+.++++++++ +..+.|-.=-+| +..
T Consensus 167 ~~~e~~~~~a~~~~~~~Gf~~~K~k~g~~~~---------------~~di~~v~avrea~~d~~l~vDan~~w----~~~ 227 (395)
T cd03323 167 LTPEGVVRLARAAIDRYGFKSFKLKGGVLPG---------------EEEIEAVKALAEAFPGARLRLDPNGAW----SLE 227 (395)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCH---------------HHHHHHHHHHHHHCCCCEEEEECCCCC----CHH
T ss_conf 7999999999999985598659874698997---------------999999999998679983998788884----999
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH--CCCC
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742--0352
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP--SVDG 212 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~--~~dg 212 (322)
....+++.+++. ..+ + + -|-.+++..+++++.. .+||...-.+.+..+....++ .+|-
T Consensus 228 ~Ai~~~r~le~~-l~w--~-------------E---ePv~~~d~~a~lr~~~-~iPIa~gE~~~~~~~~~~~i~~~avDi 287 (395)
T cd03323 228 TAIRLAKELEGV-LAY--L-------------E---DPCGGREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVDI 287 (395)
T ss_pred HHHHHHHHHHCH-HHC--C-------------C---CCCCCHHHHHHHHHHC-CCCCCCCCEECCHHHHHHHHHCCCCCE
T ss_conf 999999997222-211--3-------------4---8886657999998733-997314641047788899997488654
Q ss_pred EE
Q ss_conf 34
Q gi|254781167|r 213 VM 214 (322)
Q Consensus 213 vM 214 (322)
++
T Consensus 288 ~q 289 (395)
T cd03323 288 PL 289 (395)
T ss_pred EE
T ss_conf 64
No 478
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=50.34 E-value=17 Score=16.02 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEEC
Q ss_conf 67876667388753025777789989888742-035234412
Q gi|254781167|r 177 DIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 177 ~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigR 217 (322)
..+.++++..|..+|. =.+.|.+++.+.++ ++|.||+=.
T Consensus 172 ~~v~~~k~~~~~~kIe--VEv~~~~q~~~a~~~g~d~I~LDn 211 (272)
T cd01573 172 KALARLRATAPEKKIV--VEVDSLEEALAAAEAGADILQLDK 211 (272)
T ss_pred HHHHHHHHHCCCCEEE--EEECCHHHHHHHHHCCCCEEEECC
T ss_conf 9999998629997089--983999999999846999999779
No 479
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=50.19 E-value=17 Score=16.01 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHCCCEEEECCCCCCHHH-HCCCHH-------HHHHC-----CCCCCC-EEEEE-ECC---CHHHHHHH-
Q ss_conf 6078999999828982998170332477-608978-------98302-----745784-69998-269---98999998-
Q gi|254781167|r 5 TDRHYRFFARLLTNNALLYTEMIVADAI-LRGDKK-------NILGF-----STQEKP-LALQI-GGA---DISKLVEA- 65 (322)
Q Consensus 5 Td~~fR~l~r~~~~~~~~~TEmi~a~~l-~~~~~~-------~~~~~-----~~~e~p-~~~Ql-~g~---~p~~~~~a- 65 (322)
-|++|=+++-..+.|.+++-.=+ ++ +++.+. .++.+ .-..++ ++.-+ ||+ +++...+.
T Consensus 20 YD~~~A~i~d~agvD~iLVGDSl---gmv~~G~~~T~~vtld~mi~H~~aV~rg~~~~~vv~DmPf~sy~~s~~~A~~nA 96 (254)
T cd06557 20 YDYPTAKLADEAGVDVILVGDSL---GMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred CCHHHHHHHHHCCCCEEEECCCH---HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 89999999987599899977758---873077766441689999999999971187733998556654579999999999
Q ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC---------CCC----CCCC
Q ss_conf 875310453777442564136776668899998558999999999850279069998611---------345----6653
Q gi|254781167|r 66 AKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI---------GVD----DQIP 132 (322)
Q Consensus 66 a~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl---------G~~----~~~~ 132 (322)
.+++.+.|+|.|-|--|- ...++++.++++ ++||---+=| |+. +.+.
T Consensus 97 ~rl~ke~GadaVKlEgg~-------------------~~~~~i~~L~~~-GIPV~gHiGLtPQ~~~~~Gg~k~qGk~~~e 156 (254)
T cd06557 97 ARLMKEAGADAVKLEGGA-------------------EVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEE 156 (254)
T ss_pred HHHHHHCCCCEEEECCCC-------------------CHHHHHHHHHHC-CCCEEEEECCCCHHCCCCCCCEEECCCHHH
T ss_conf 999985599989979883-------------------389999999987-997665415774011216875322499999
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 220145543200012201210013566402577421227661046787666738875302577
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNG 195 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NG 195 (322)
...+++-++.++++|+..+-+-+=. -+...++.+.++ +|+|+-|
T Consensus 157 a~~l~~dA~~le~AGaf~ivlE~vp------------------~~la~~It~~~~-IPtIGIG 200 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVP------------------AELAKEITEALS-IPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCH------------------HHHHHHHHHCCC-CCEEECC
T ss_conf 9999999999984795599995670------------------999999985789-8889456
No 480
>PRK12928 lipoyl synthase; Provisional
Probab=49.93 E-value=18 Score=15.98 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=60.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEE--------EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 846999826998999998875310453777--------442564136776668899998558999999999850279069
Q gi|254781167|r 48 KPLALQIGGADISKLVEAAKIVEDFGYNEI--------NLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPV 119 (322)
Q Consensus 48 ~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~i--------dlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pv 119 (322)
+|.. +=-.+|+..++|++.+ |-+++ ||.= +||+ ..+++++++++.. --+
T Consensus 83 ~P~~--lD~~EP~rvA~av~~m---~LkyvVITSV~RDDL~D-----------gGA~------hfa~~I~~Ir~~~-P~~ 139 (290)
T PRK12928 83 RPMP--LDPDEPERVAEAVAAL---GLRYVVLTSVARDDLPD-----------GGAA------HFVATIAAIRARN-PGT 139 (290)
T ss_pred CCCC--CCHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCC-----------CCHH------HHHHHHHHHHHHC-CCC
T ss_conf 9898--9803479999999983---89768984123678866-----------4529------9999999998459-986
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHCCCCCCCCCCCCCHHH----HHHHHHHHCCCCC
Q ss_conf 99861134566532201455432000122012-----10013566402577421227661046----7876667388753
Q gi|254781167|r 120 TVKCRIGVDDQIPAVALRNLVKSIKKSGVNGI-----WIHARKAILKGLSPKDNRKIPNLDYD----IVYEIKKENPDLF 190 (322)
Q Consensus 120 svK~RlG~~~~~~~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~~~~~~~~~~~----~i~~l~~~~~~~~ 190 (322)
+|-+=+. |... .....++.+.+++.+.+ || +| .+. . -.+.|+|+ ..+..|+..|.++
T Consensus 140 ~iEvLiP--DF~G--~~~~al~~v~~a~pdV~nHNiETV-~r--L~~-----~--VRp~A~Y~rSL~vL~~ak~~~~~i~ 205 (290)
T PRK12928 140 GIEVLTP--DFWG--GVARALATVLAAKPDCFNHNLETV-PR--LQK-----A--VRRGADYQRSLDLLARAKELAPGIP 205 (290)
T ss_pred EEEEECH--HHCC--CHHHHHHHHHHCCCHHHHCCCCCC-HH--HCC-----C--CCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 7997071--1136--878999999846854654550120-43--171-----2--4885508999999999997388852
Q ss_pred -----CCCCCCCCCHHHHHHHH-----HCCCCEEEEC
Q ss_conf -----02577778998988874-----2035234412
Q gi|254781167|r 191 -----IGLNGGLEDMSQALKIL-----PSVDGVMIGR 217 (322)
Q Consensus 191 -----i~~NGdi~~~~~a~~~l-----~~~dgvMigR 217 (322)
..|-| .+.++..+.+ .|||=+-||.
T Consensus 206 TKSgiMvGLG--Et~eEv~~~~~DLr~~gvdilTiGQ 240 (290)
T PRK12928 206 TKSGLMLGLG--ETEDEVIETLRDLRAVDCDRLTIGQ 240 (290)
T ss_pred EEEEEEEECC--CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 4134588605--8899999999999981998998240
No 481
>PRK12857 putative aldolase; Reviewed
Probab=49.75 E-value=18 Score=15.96 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=80.2
Q ss_pred CCCCCEEEEEECCCH-----HHHHHHHH-HHHCCCCC-EEEECCCCCHHHH----HHHHHHH------HH--HHHHHHHH
Q ss_conf 457846999826998-----99999887-53104537-7744256413677----6668899------99--85589999
Q gi|254781167|r 45 TQEKPLALQIGGADI-----SKLVEAAK-IVEDFGYN-EINLNVGCPSARV----HEGSFGA------CL--MLNPDIVG 105 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p-----~~~~~aa~-~~~~~g~~-~idlN~GCP~~~v----~~~g~Ga------aL--l~~p~~~~ 105 (322)
....|+++|+..+.- +.+...++ +.+..+.. .+.|+=| ..--. ...|+-| .| =.|-.+..
T Consensus 40 e~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VpV~lHLDH~-~~~e~i~~ai~~Gf~SVM~DgS~l~~eeNi~~Tk 118 (284)
T PRK12857 40 AERSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG-TDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTK 118 (284)
T ss_pred HHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 978998999171477657999999999999997699899967988-9999999999809987997289899999999999
Q ss_pred HHHHHHHCCCCEEEEEEEE-CC-CCCCCC-------CCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999985027906999861-13-456653-------2201455432000122012-----10013566402577421227
Q gi|254781167|r 106 DCIAAMCKALSIPVTVKCR-IG-VDDQIP-------AVALRNLVKSIKKSGVNGI-----WIHARKAILKGLSPKDNRKI 171 (322)
Q Consensus 106 ~iv~~~~~~~~~pvsvK~R-lG-~~~~~~-------~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~~~~~ 171 (322)
++++-... .+++|=.-+= +| .++... +....+..+-++++|+|+| |+||-. + ..
T Consensus 119 ~vv~~ah~-~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~y---k--------~~ 186 (284)
T PRK12857 119 KVVEIAHA-VGVSVEAELGKIGGTEDDITVDEREAFFTDPEEARRFVEETGVDALAIAIGTAHGPY---K--------GV 186 (284)
T ss_pred HHHHHHHH-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHCCCCCCC---C--------CC
T ss_conf 99999987-089158853013676777776630002589999999999879787701205666776---8--------98
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCC-CCHHHHHHHHH-CCCCEEEECC
Q ss_conf 66104678766673887530257777-89989888742-0352344122
Q gi|254781167|r 172 PNLDYDIVYEIKKENPDLFIGLNGGL-EDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 172 ~~~~~~~i~~l~~~~~~~~i~~NGdi-~~~~~a~~~l~-~~dgvMigRg 218 (322)
|.+|++.+.++++.. ++|++.-|+= .+.++..+..+ |+.=|=|+..
T Consensus 187 p~L~~~~L~~I~~~~-~vPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~T~ 234 (284)
T PRK12857 187 PKLDFDRLAKIRELV-NIPLVLHGSSGVPDEAIRKAISLGVRKVNIDTN 234 (284)
T ss_pred CCCCHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHCCEEEEECHH
T ss_conf 856999999998616-999897689999999999999809759974879
No 482
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=49.58 E-value=15 Score=16.56 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 104678766673887530257777899898887420352344122000124399
Q gi|254781167|r 174 LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLT 227 (322)
Q Consensus 174 ~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~ 227 (322)
++..|+..+.+....+.++.| ..+..+....++.+|||.+-=|.=-+|..+.
T Consensus 20 l~~~y~~~i~~~G~~Pi~iP~--~~~~~~~~~~l~~lDGliLtGG~Di~p~~yg 71 (189)
T cd01745 20 LNQYYVDAVRKAGGLPVLLPP--VDDEEDLEQYLELLDGLLLTGGGDVDPPLYG 71 (189)
T ss_pred HHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHCCEEEECCCCCCCHHHCC
T ss_conf 869999999987999999689--9987999999987799997288778810038
No 483
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.49 E-value=18 Score=15.93 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCEEEEEECCC-HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 784699982699-8999998875310453777442564136776668899998558999999999850279069998611
Q gi|254781167|r 47 EKPLALQIGGAD-ISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI 125 (322)
Q Consensus 47 e~p~~~Ql~g~~-p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl 125 (322)
+.++.+-|=-.| |... ++.+.+.|+|.+.+-..++. +-+.+++++..+ .++.+-|-+ +
T Consensus 53 ~~~IflDlK~~Di~~tv---a~~~~~~Gad~~tvh~~~g~----------------~~~~~a~~~a~~-~~~~~~v~l-~ 111 (202)
T cd04726 53 DKIIVADLKTADAGALE---AEMAFKAGADIVTVLGAAPL----------------STIKKAVKAAKK-YGKEVQVDL-I 111 (202)
T ss_pred CCEEEEEEEECCCHHHH---HHHHHHHCCCEEEEECCCCH----------------HHHHHHHHHHHH-CCCEEEEEE-E
T ss_conf 99799986533616799---99999707988999666898----------------999999998863-696799998-3
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 34566532201455432000122012100135664025774212276610467876667388753025777789989888
Q gi|254781167|r 126 GVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALK 205 (322)
Q Consensus 126 G~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~ 205 (322)
+..+ .+......+.|++.+.+|--...+. + ....--+.+..+++... ..+..-|||+- ++..+
T Consensus 112 ~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~~--~------g~~~~~~~~~~i~~~~~-~~i~VtpGIr~-~t~~~ 174 (202)
T cd04726 112 GVED-------PEKRAKLLKLGVDIVILHRGIDAQA--A------GGWWPEDDLKKVKKLLG-VKVAVAGGITP-DTLPE 174 (202)
T ss_pred CCCC-------HHHHHHHHHCCHHHHHHHHHHHHHH--C------CCCCHHHHHHHHHHHCC-CCEEECCCCCH-HHHHH
T ss_conf 6899-------9999988856805889998787775--2------89970899999986239-96788999885-40999
Q ss_pred HH-HCCCCEEEECCCCCHH
Q ss_conf 74-2035234412200012
Q gi|254781167|r 206 IL-PSVDGVMIGRAAYKNS 223 (322)
Q Consensus 206 ~l-~~~dgvMigRga~~~P 223 (322)
.+ .|+|-+.|||.+....
T Consensus 175 a~~~gad~iVVGR~It~A~ 193 (202)
T cd04726 175 FKKAGADIVIVGRAITGAA 193 (202)
T ss_pred HHHCCCCEEEECCCCCCCC
T ss_conf 9975999999898345799
No 484
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=48.74 E-value=18 Score=15.85 Aligned_cols=157 Identities=15% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCCCCEEEEEECCCH-----HHHHHHHH-HHHCCCCC-EEEECCCCCHHH----HHHHHHHHHHH--------HHHHHHH
Q ss_conf 457846999826998-----99999887-53104537-774425641367----76668899998--------5589999
Q gi|254781167|r 45 TQEKPLALQIGGADI-----SKLVEAAK-IVEDFGYN-EINLNVGCPSAR----VHEGSFGACLM--------LNPDIVG 105 (322)
Q Consensus 45 ~~e~p~~~Ql~g~~p-----~~~~~aa~-~~~~~g~~-~idlN~GCP~~~----v~~~g~GaaLl--------~~p~~~~ 105 (322)
....|+++|+..+.- +.+...++ +.+..+.- .+.|+= |+.-- ....|+-|-+. .|-.+..
T Consensus 40 e~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~VPV~lHLDH-~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~Tk 118 (283)
T PRK07998 40 RSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDH-GKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTQ 118 (283)
T ss_pred HHCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 97869899977506755599999999999999869989997588-89999999999739988986099899999999999
Q ss_pred HHHHHHHCCCCEEEEEEEECC----CCCCC----C-CCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHCCCCCCCCCC
Q ss_conf 999998502790699986113----45665----3-2201455432000122012-----10013566402577421227
Q gi|254781167|r 106 DCIAAMCKALSIPVTVKCRIG----VDDQI----P-AVALRNLVKSIKKSGVNGI-----WIHARKAILKGLSPKDNRKI 171 (322)
Q Consensus 106 ~iv~~~~~~~~~pvsvK~RlG----~~~~~----~-~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~~~~~ 171 (322)
++++-... .+++| ---|| ..+.. + +..-.+..+-++++|+|.| |+||-. ..
T Consensus 119 ~vv~~Ah~-~gv~V--EaElG~i~G~ed~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~~------------~~ 183 (283)
T PRK07998 119 EAVDFCKS-YGVPV--EAELGAILGKEDDHVSEADCKTEPEKVKTFVERTGCDMLAVSIGNVHGLD------------DI 183 (283)
T ss_pred HHHHHHHH-CCCEE--EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC------------CC
T ss_conf 99999977-69979--99853535754777775203899999999999868899964046645678------------78
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHH-CCCCEEEECC
Q ss_conf 661046787666738875302577778-9989888742-0352344122
Q gi|254781167|r 172 PNLDYDIVYEIKKENPDLFIGLNGGLE-DMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 172 ~~~~~~~i~~l~~~~~~~~i~~NGdi~-~~~~a~~~l~-~~dgvMigRg 218 (322)
|.+|++.+.++++.. ++|++.-|+=- +.++..+... |+.=|=|+..
T Consensus 184 p~l~~~~l~~I~~~~-~iPLVLHGgSGi~~e~i~~ai~~Gi~KiNi~Te 231 (283)
T PRK07998 184 PRIDIPLLKRIAEVS-PVPLVIHGGSGIPPDILRSFVNYRVAKVNIASD 231 (283)
T ss_pred CCCCHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf 863899999988647-987898699999999999999869869995868
No 485
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase; InterPro: IPR010159 This entry represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolase (3.5.1.14 from EC) is a homodimeric zinc-binding mammalian enzyme that catalyzes the hydrolysis of N-alpha-acylated amino acids except L-aspartic acid. , . These enzymes are listed as being members of MEROPS peptidase family S20A (clan MH).; GO: 0004046 aminoacylase activity, 0006520 amino acid metabolic process, 0005737 cytoplasm.
Probab=48.63 E-value=12 Score=17.15 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=15.8
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHC
Q ss_conf 68899998558--999999999850
Q gi|254781167|r 91 GSFGACLMLNP--DIVGDCIAAMCK 113 (322)
Q Consensus 91 ~g~GaaLl~~p--~~~~~iv~~~~~ 113 (322)
-|-||-||.|. |.+.++|..+++
T Consensus 206 PGHGs~l~~NtAmEkL~k~v~~i~~ 230 (433)
T TIGR01880 206 PGHGSKLMENTAMEKLEKSVESIRR 230 (433)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8710116711578999999999998
No 486
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=48.57 E-value=18 Score=15.83 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=13.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHH
Q ss_conf 4699982699899999887531
Q gi|254781167|r 49 PLALQIGGADISKLVEAAKIVE 70 (322)
Q Consensus 49 p~~~Ql~g~~p~~~~~aa~~~~ 70 (322)
.+++-+=.|||..|.+|-+++.
T Consensus 199 div~S~KaSn~~v~v~Ayrll~ 220 (613)
T PRK02048 199 DVVISIKASNTVVMVKTVRLLV 220 (613)
T ss_pred CEEEEEECCCHHHHHHHHHHHH
T ss_conf 1899943352899999999999
No 487
>pfam00121 TIM Triosephosphate isomerase.
Probab=48.44 E-value=18 Score=15.85 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHH--HCCCCEEEECCCCC
Q ss_conf 875302577778998988874--20352344122000
Q gi|254781167|r 187 PDLFIGLNGGLEDMSQALKIL--PSVDGVMIGRAAYK 221 (322)
Q Consensus 187 ~~~~i~~NGdi~~~~~a~~~l--~~~dgvMigRga~~ 221 (322)
.+++|.+=|. .+.+.+.+.+ +++||++||++.+.
T Consensus 200 ~~i~iLYGGS-Vn~~N~~~i~~~~~vdG~LVGgASL~ 235 (243)
T pfam00121 200 EEVRILYGGS-VNPDNAKELLAQPDIDGFLVGGASLK 235 (243)
T ss_pred CCCCEEEECC-CCHHHHHHHHCCCCCCEEEECHHHCC
T ss_conf 6642897176-89989999966889987984168679
No 488
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=47.73 E-value=19 Score=15.74 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCC---CCCCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHCCCCC
Q ss_conf 55899999999985027906999861134----566---532201455432000122012-----100135664025774
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKCRIGV----DDQ---IPAVALRNLVKSIKKSGVNGI-----WIHARKAILKGLSPK 166 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG~----~~~---~~~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~ 166 (322)
.|-.+..++++.... .+++| -.-||. ++. +....-.+-++.+.+.|+|.| |+||.. +
T Consensus 114 eNi~~Tk~vv~~Ah~-~gv~V--EaElG~igg~Ed~~~~~~~~~~~e~a~~f~eTgvD~LAvaiGt~HG~Y--------~ 182 (293)
T PRK07315 114 ENLKLAKEVVEKAHA-KGISV--EAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPY--------P 182 (293)
T ss_pred HHHHHHHHHHHHHHH-CCCEE--EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHCCCCCCC--------C
T ss_conf 999999999999987-59948--998501256467866666668888999998706643401204524553--------8
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHH-CCCCEEEEC
Q ss_conf 21227661046787666738875302577778-9989888742-035234412
Q gi|254781167|r 167 DNRKIPNLDYDIVYEIKKENPDLFIGLNGGLE-DMSQALKILP-SVDGVMIGR 217 (322)
Q Consensus 167 ~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~-~~~~a~~~l~-~~dgvMigR 217 (322)
. ..+.+|++.++++.+.+|++|++.-|+=- +.++..+... |+.=|=|+.
T Consensus 183 ~--~~~~L~~d~l~~I~~~v~~vPLVLHGgSG~~~e~i~~ai~~Gi~KvNi~T 233 (293)
T PRK07315 183 E--NWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred C--CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 9--99876899999998517998579758999999999999981955887461
No 489
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.62 E-value=19 Score=15.73 Aligned_cols=120 Identities=20% Similarity=0.297 Sum_probs=57.8
Q ss_pred ECCCHHHHHHHHHHHHCCCCCEEEE---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
Q ss_conf 2699899999887531045377744---2564136776668899998558999999999850279069998611345665
Q gi|254781167|r 55 GGADISKLVEAAKIVEDFGYNEINL---NVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQI 131 (322)
Q Consensus 55 ~g~~p~~~~~aa~~~~~~g~~~idl---N~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~ 131 (322)
-+-.|+....-++.+.+.|+.+|-| |.++ +|..+-.+-..+.++++.+.+ +|=-.-+|+|.- .
T Consensus 171 rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~a---------YG~D~~~~~~~l~~Ll~~l~~---I~G~~riR~~~~--~ 236 (437)
T COG0621 171 RSRPPEDILKEVKRLVAQGVKEIVLTGQDVNA---------YGKDLGGGKPNLADLLRELSK---IPGIERIRFGSS--H 236 (437)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEEEHHH---------CCCCCCCCCCCHHHHHHHHHC---CCCCEEEEEECC--C
T ss_conf 57798999999999998897499999881101---------044677776689999999960---799108999358--8
Q ss_pred CCCCHHHHHHHHCCCC--CCHHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 3220145543200012--201210---01356640257742122766104678766673887530
Q gi|254781167|r 132 PAVALRNLVKSIKKSG--VNGIWI---HARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFI 191 (322)
Q Consensus 132 ~~~~~~~~~~~~~~~g--~~~iti---H~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i 191 (322)
+.....++++.+.+.. +..+.+ ||-..+++-+. -.|...-..+.|.++++..|++.|
T Consensus 237 P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~---R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 237 PLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMK---RGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred CHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 00118899999865784143446755569879999737---876799999999999986898567
No 490
>PRK05443 polyphosphate kinase; Provisional
Probab=46.81 E-value=18 Score=15.88 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH------HHHH
Q ss_conf 558999999999850279069998611345665322014554320001220121------0013
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW------IHAR 156 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it------iH~R 156 (322)
++-..+..+++|....-.+-|-|-.|.=||++ ++ +++++.++++||..++ +|+.
T Consensus 380 ~~S~Iv~aLi~AA~nGK~VtvlVELkARFDEe-~N---I~wA~~Le~aGv~ViYG~~glKvHaK 439 (692)
T PRK05443 380 KDSPIVDALIEAAENGKQVTVLVELKARFDEE-AN---IRWARRLEEAGVHVVYGVVGLKTHAK 439 (692)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEECCCCCHH-HH---HHHHHHHHHCCEEEEECCCCCEEEEE
T ss_conf 98889999999998298899999973340678-88---99999998599299917888500578
No 491
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=46.44 E-value=20 Score=15.60 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--C-CC
Q ss_conf 99826998999998875310453777442564136776668899998558999999999850279069998611--3-45
Q gi|254781167|r 52 LQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI--G-VD 128 (322)
Q Consensus 52 ~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl--G-~~ 128 (322)
+-++..+++....| ++.|+|-|.|+-.=. - .+|...+.++.++ ++.+++||-|=+|- | |-
T Consensus 3 lEvcv~s~~~a~~A----~~~GAdRIELCs~L~-----~----GGlTPs~~~i~~~----~~~~~ipv~vMIRPR~G~F~ 65 (202)
T pfam03932 3 LEVCAENIESLLAA----QAGGADRVELCANLA-----V----GGLTPSYGVIKSA----AQRAKIPVYVMIRPRGGDFV 65 (202)
T ss_pred EEEEECCHHHHHHH----HHCCCCEEEECCCCC-----C----CCCCCCHHHHHHH----HHHCCCCEEEEEECCCCCCC
T ss_conf 99995999999999----984999998626766-----6----8979899999999----98659974999842799886
Q ss_pred C-CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC---CCCCCHHHHH
Q ss_conf 6-65322014554320001220121001356640257742122766104678766673887530257---7778998988
Q gi|254781167|r 129 D-QIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLN---GGLEDMSQAL 204 (322)
Q Consensus 129 ~-~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~N---Gdi~~~~~a~ 204 (322)
. ........+=++.+.+.|++.+.+=+=| + -+..|.+...++.+....+++... -.+.++.++.
T Consensus 66 Ys~~E~~~M~~dI~~~~~~G~~GvV~G~L~--------~----d~~iD~~~~~~li~~a~~l~~TFHRAfD~~~d~~~al 133 (202)
T pfam03932 66 YSDHELKAMLEDILKAVELGAPGVVLGALT--------A----DGEIDTKRMEKLIEAAGGLGVTFHRAFDMCPDPEEAL 133 (202)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEC--------C----CCCCCHHHHHHHHHHHCCCCEEEECHHHCCCCHHHHH
T ss_conf 498999999999999998698978998888--------9----9982999999999974688559862043059999999
Q ss_pred HHHH--CCCCEEEECC
Q ss_conf 8742--0352344122
Q gi|254781167|r 205 KILP--SVDGVMIGRA 218 (322)
Q Consensus 205 ~~l~--~~dgvMigRg 218 (322)
+.+- |++.|+-.=|
T Consensus 134 ~~L~~lG~~rILTSGg 149 (202)
T pfam03932 134 EQLIELGCERVLTSGG 149 (202)
T ss_pred HHHHHCCCCEEECCCC
T ss_conf 9999759987875799
No 492
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=46.20 E-value=7.1 Score=18.91 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 1455432000122012100135664025774212276610467876667388753025777
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGG 196 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGd 196 (322)
+..|++. .|+. |+|||- +|.| .-+|-++|++.||.+||
T Consensus 42 tPhY~n~---~g~h--~LHGRA-------------~P~A-----~G~KlANP~L~Viv~GG 79 (302)
T TIGR02177 42 TPHYVNV---NGFH--GLHGRA-------------LPVA-----TGIKLANPKLKVIVVGG 79 (302)
T ss_pred CCCCCCC---CCCC--CCCCCC-------------CHHH-----HHHHHCCCCCEEEEEEC
T ss_conf 7730013---6645--233563-------------1011-----01201089846898606
No 493
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=45.16 E-value=6 Score=19.45 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHH
Q ss_conf 999999985027906999861134566532201455432000122012
Q gi|254781167|r 104 VGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGI 151 (322)
Q Consensus 104 ~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~i 151 (322)
.++.++-+. ++|=+||-|++.++++..-...|+...+++.++-.+
T Consensus 190 ~eqf~kni~---~LP~~vksRl~LENDd~sYs~eelL~lCek~~iPlV 234 (347)
T COG4294 190 LEQFIKNIQ---RLPDSVKSRLTLENDDKSYSTEELLPLCEKLNIPLV 234 (347)
T ss_pred HHHHHHHHH---HCCHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 999999886---338889976533066543669999999887389879
No 494
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=44.70 E-value=21 Score=15.42 Aligned_cols=116 Identities=17% Similarity=0.315 Sum_probs=67.5
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
Q ss_conf 99998289829981703324776089789830274578469998269989999988753104537774425641367766
Q gi|254781167|r 11 FFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHE 90 (322)
Q Consensus 11 ~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~ 90 (322)
.-.+.||....+|+++-.++-... .=..+.+....+ +.=.-=+++++.+.++.+.+.|++.|-|=.|.--.++
T Consensus 63 lt~~~fG~~I~LfaPLYlSN~C~N--~C~YCGf~~~N~---i~R~~Ls~eEI~~E~~ai~~~G~k~ILLvtGE~~~~~-- 135 (371)
T PRK09240 63 LTRQRFGNTISLYTPLYLSNLCAN--DCTYCGFSMSNK---IKRKTLDEEEIEREMAAIKKLGFEHILLVTGEHEAKV-- 135 (371)
T ss_pred HHHHHCCCEEEEEECHHHHCCCCC--CCEECCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--
T ss_conf 999873985899850440222177--887589867787---6300289999999999999769523885405787769--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHH
Q ss_conf 6889999855899999999985027-90699986113456653220145543200012201210
Q gi|254781167|r 91 GSFGACLMLNPDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWI 153 (322)
Q Consensus 91 ~g~GaaLl~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~iti 153 (322)
+.+-+.++++.+++.. .+.|.|- .....++ +.+.++|++.++|
T Consensus 136 ---------~~~Yi~~~v~~ik~~f~~v~iev~----------Pl~~eeY-~~L~~aG~d~~~v 179 (371)
T PRK09240 136 ---------GVDYIRRALPLAREYFSSVAIEVQ----------PLSEEEY-AELVELGLDGVTV 179 (371)
T ss_pred ---------CHHHHHHHHHHHHHHCCCEEEEEC----------CCCHHHH-HHHHHCCCCEEEE
T ss_conf ---------889999999999975674079952----------5998999-9999859986999
No 495
>pfam02503 PP_kinase Polyphosphate kinase. Polyphosphate kinase (Ppk) catalyses the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules.
Probab=44.68 E-value=20 Score=15.49 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH------HHHH
Q ss_conf 558999999999850279069998611345665322014554320001220121------0013
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW------IHAR 156 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~it------iH~R 156 (322)
++-..+..+++|....=.+-|-|-.|.=||++ ++ .++++.++++||..++ +|+.
T Consensus 373 ~~S~Iv~aLi~AA~nGK~VtvlVELkARFDEe-~N---I~wA~~Le~aGv~ViyG~~glKvHaK 432 (678)
T pfam02503 373 KDSPIVDALIEAAENGKQVTVLVELKARFDEE-NN---IRWARRLEEAGVHVIYGVVGLKTHAK 432 (678)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEECCCCCHH-HH---HHHHHHHHHCCEEEEECCCCCEEEEE
T ss_conf 98889999999998298899999973340678-88---99999998599299917888500578
No 496
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=44.23 E-value=15 Score=16.59 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCC-----HHHHHHCCCC--C------CCEEEEEECCCHHHHHHH
Q ss_conf 860789999998289829981703324776089-----7898302745--7------846999826998999998
Q gi|254781167|r 4 WTDRHYRFFARLLTNNALLYTEMIVADAILRGD-----KKNILGFSTQ--E------KPLALQIGGADISKLVEA 65 (322)
Q Consensus 4 ~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~-----~~~~~~~~~~--e------~p~~~Ql~g~~p~~~~~a 65 (322)
++|.+.=.-||+ |.+|+|-||--++.-.++- .-.+|...+. + +|-.=-||.|||++.|=.
T Consensus 94 W~D~rLt~Av~e--G~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~Yv~VhP~FR~IfTSNp~EYAGV 166 (265)
T TIGR02640 94 WVDNRLTLAVRE--GFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESRYVDVHPEFRVIFTSNPVEYAGV 166 (265)
T ss_pred CCCCHHHHHHHC--CCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCCCCCCCC
T ss_conf 678357899756--9727664757886204565675555232158887877872257887024631487010576
No 497
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=42.69 E-value=22 Score=15.21 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCC-CHH-HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 1345665322014554320001220121001356640257742122-----766-104-678766673887530257777
Q gi|254781167|r 125 IGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRK-----IPN-LDY-DIVYEIKKENPDLFIGLNGGL 197 (322)
Q Consensus 125 lG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~-----~~~-~~~-~~i~~l~~~~~~~~i~~NGdi 197 (322)
=|+.-..+...+..+++.+.+.|-..+..|.| |.|...++. .|. .|. .++..+++.++.-++.+-|
T Consensus 82 HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~R-----gcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r~~~avG-- 154 (345)
T COG0429 82 HGLEGSSNSPYARGLMRALSRRGWLVVVFHFR-----GCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPRPLYAVG-- 154 (345)
T ss_pred ECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-----CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEE--
T ss_conf 42578886789999999999668809998653-----45687666761441651268999999999857999669999--
Q ss_pred CCHH-HHHHH-H--HCCCCEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8998-98887-4--203523441220001243999999871998
Q gi|254781167|r 198 EDMS-QALKI-L--PSVDGVMIGRAAYKNSAMLTTVDEYFSNPL 237 (322)
Q Consensus 198 ~~~~-~a~~~-l--~~~dgvMigRga~~~P~if~~I~~~l~~~~ 237 (322)
.|.- ..+.+ + +|-|--..+-.+..+||-+..+...+..+.
T Consensus 155 ~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~ 198 (345)
T COG0429 155 FSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGF 198 (345)
T ss_pred ECCCHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCCH
T ss_conf 55339999998876156765210146507888998787751863
No 498
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=42.41 E-value=23 Score=15.18 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHH
Q ss_conf 98999998875310453777442564136776668899998558999999999850279069998611345665322014
Q gi|254781167|r 58 DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALR 137 (322)
Q Consensus 58 ~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~ 137 (322)
+-+....-|+-++..|+.++-| |.-+| |-.|.-+..++.++++.+++||-+-+ +++.-+-.
T Consensus 692 ~L~YY~~lA~el~~~GaHIlaI----------KDMAG---LLKP~AA~~Li~aLr~~~dlPIHlHT------HDTsG~~~ 752 (1149)
T COG1038 692 TLDYYVKLAKELEKAGAHILAI----------KDMAG---LLKPAAAYRLISALRETVDLPIHLHT------HDTSGNGV 752 (1149)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE----------HHHHH---CCCHHHHHHHHHHHHHHCCCCEEEEC------CCCCCCHH
T ss_conf 4899999999999667727876----------33342---14769999999999874488448751------67887189
Q ss_pred HHHHHHCCCCCCHHHH
Q ss_conf 5543200012201210
Q gi|254781167|r 138 NLVKSIKKSGVNGIWI 153 (322)
Q Consensus 138 ~~~~~~~~~g~~~iti 153 (322)
.-.-.+.++|+|.+-+
T Consensus 753 at~~aA~~AGvDivD~ 768 (1149)
T COG1038 753 ATYLAAVEAGVDIVDV 768 (1149)
T ss_pred HHHHHHHHCCCCHHHH
T ss_conf 9999999838636666
No 499
>pfam02574 S-methyl_trans Homocysteine S-methyltransferase. This is a family of related homocysteine S-methyltransferases enzymes: 5-methyltetrahydrofolate--homocysteine S-methyltransferases also known EC:2.1.1.13; Betaine--homocysteine S-methyltransferase (vitamin B12 dependent), EC:2.1.1.5; and Homocysteine S-methyltransferase, EC:2.1.1.10,.
Probab=41.98 E-value=23 Score=15.13 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----------CCC
Q ss_conf 9999887531045377744256413677666889999855899999999985027906999861134----------566
Q gi|254781167|r 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGV----------DDQ 130 (322)
Q Consensus 61 ~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~----------~~~ 130 (322)
...+++......+.+.|-+||..| |.....+++.+....+.|++|.==.|+ ...
T Consensus 199 ~~~~~~~~~~~~~~~~iGiNC~~~----------------~~~~~~~~~~~~~~~~~pl~~yPN~g~~~~~~~~~~~~~~ 262 (303)
T pfam02574 199 ATIEAALNSVQAEIDAVGVNCALG----------------PDIMDEILELLSLTARKPLSVYPNSGEPYDAGKKEYDGTP 262 (303)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCC----------------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCH
T ss_conf 999999974577870898516784----------------8788999999984599858998379898779874257997
Q ss_pred CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 53220145543200012201210013566402577421227661046787666738875
Q gi|254781167|r 131 IPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDL 189 (322)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~ 189 (322)
........+++...+.|++.|=-=|+| .-+.|+++++.+ ++
T Consensus 263 ~~~~~~~~~~~~w~~~Ga~iiGGCCGt-----------------~P~hI~~l~~~l-d~ 303 (303)
T pfam02574 263 DELAPSYWSLKEFVASGARIIGGCCGT-----------------TPDHIREIAEAV-DP 303 (303)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCC-----------------CHHHHHHHHHHH-CC
T ss_conf 998899999999998399199988789-----------------999999999976-82
No 500
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=41.81 E-value=23 Score=15.11 Aligned_cols=123 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCHH-----HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 566532201455432000122012-----100135664025774212276610467876667388753025777789989
Q gi|254781167|r 128 DDQIPAVALRNLVKSIKKSGVNGI-----WIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQ 202 (322)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~i-----tiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~ 202 (322)
+....+....+..+-++++|+|.| |+||-. +. .|.+|++.++++++.. ++|++.-|+--..++
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y--------k~---~p~L~~d~L~~I~~~~-~iPLVLHGgSG~~~e 216 (284)
T PRK12737 149 EKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLY--------KG---EPKLDFDRLEEIREKV-SIPLVLHGASGVPDE 216 (284)
T ss_pred CCHHHCCCHHHHHHHHHHHCCCEEEECCCCCCCCC--------CC---CCCCCHHHHHHHHHHC-CCCEEEECCCCCCHH
T ss_conf 41113179999999999969898700037535675--------99---9857899999999863-999896689999999
Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88874203523441220001243999999871998888999889999999999999999999
Q gi|254781167|r 203 ALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGSSPIKTRVDKDFWRKISASMTDYAA 264 (322)
Q Consensus 203 a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~~~~~~p~~~~~~~~~~~~i~~~~~~y~~ 264 (322)
-.+..-...=.-|-=+.--+-.....+++++........|... ...-...+.+...+++.
T Consensus 217 ~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~~p~~~d~~~~--~~~~~~a~~e~v~~ki~ 276 (284)
T PRK12737 217 DVKKAISLGICKVNVATELKIAFSDAVKKYFYENPKANDPRKY--MTPGKEAMKEVVRHKIK 276 (284)
T ss_pred HHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 9999997795899858589999999999999878786896999--99999999999999999
Done!