HHsearch alignment for GI: 254781167 and conserved domain: pfam00724

>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=99.14  E-value=8.8e-10  Score=91.92  Aligned_cols=224  Identities=17%  Similarity=0.201  Sum_probs=143.1

Q ss_pred             CCCHHHHHHHHH-HCCCEEEECCCCCCH--HHHCC------CHH------HHH-HCCCCCCCEEEEEE--CCC-------
Q ss_conf             860789999998-289829981703324--77608------978------983-02745784699982--699-------
Q gi|254781167|r    4 WTDRHYRFFARL-LTNNALLYTEMIVAD--AILRG------DKK------NIL-GFSTQEKPLALQIG--GAD-------   58 (322)
Q Consensus         4 ~Td~~fR~l~r~-~~~~~~~~TEmi~a~--~l~~~------~~~------~~~-~~~~~e~p~~~Ql~--g~~-------   58 (322)
T Consensus        33 ~t~~~~~~y~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~i~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~  112 (336)
T pfam00724        33 VPERLAEYYSQRAQGGGTLIITEAVFVDPKGGGFDNQPGLWDDEQVEGWKKLTEAVHENGSKIGVQLWHLGREAPPEYLE  112 (336)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf             99999999999964697489968717882005799987467689999999999999855984999703577768823378


Q ss_pred             -----------------------------HHHHHHHHHHHHCCCCCEEEECCCC---------CHHHHHHHHHHHHHHHH
Q ss_conf             -----------------------------8999998875310453777442564---------13677666889999855
Q gi|254781167|r   59 -----------------------------ISKLVEAAKIVEDFGYNEINLNVGC---------PSARVHEGSFGACLMLN  100 (322)
Q Consensus        59 -----------------------------p~~~~~aa~~~~~~g~~~idlN~GC---------P~~~v~~~g~GaaLl~~  100 (322)
T Consensus       113 ~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR  192 (336)
T pfam00724       113 DLGLRPSDPSALPASIKVRELTKEEIKEIIQEFVQAAKRAVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENR  192 (336)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf             88888878766788988876999999999999999999999829998996142678999862876588977678898897


Q ss_pred             HHHHHHHHHHHHCCCC--EEEEEEEECCCCCCC----CCCCHHHHHHHHCCCCCCHHHH-HHHHHHHHCCCC--CCCCCC
Q ss_conf             8999999999850279--069998611345665----3220145543200012201210-013566402577--421227
Q gi|254781167|r  101 PDIVGDCIAAMCKALS--IPVTVKCRIGVDDQI----PAVALRNLVKSIKKSGVNGIWI-HARKAILKGLSP--KDNRKI  171 (322)
Q Consensus       101 p~~~~~iv~~~~~~~~--~pvsvK~RlG~~~~~----~~~~~~~~~~~~~~~g~~~iti-H~Rt~~~~g~s~--~~~~~~  171 (322)
T Consensus       193 ~Rf~~eIi~aIR~~vg~d~~i~vRis-~~d~~~~g~~~~e~~~~~~~~~~~~g~d~~~~~~~~~~--~~~~~~~~~~~~~  269 (336)
T pfam00724       193 ARFPLEVVDAVKEAVGEDRPIGYRLS-PDDVFEGGLTGAETLAQFAYAAGELGVRVLDGTRLAYI--HAIEPRVTGPFPV  269 (336)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEE--ECCCCCCCCCCCC
T ss_conf             54899999999997287766426746-52246899884268999999999838775642766223--2024433578775


Q ss_pred             CC-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHH
Q ss_conf             66-10467876667388753025777789989888742-0-3523441220001243999999
Q gi|254781167|r  172 PN-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDE  231 (322)
Q Consensus       172 ~~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~  231 (322)
T Consensus       270 ~~~~~~~~~~~~k~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~  331 (336)
T pfam00724       270 ETGQQVENNEFIKKVW-KGPVITVGRINDPEFAAEIVEEGRADLVAMGRPFLADPDLVKKAKE  331 (336)
T ss_pred             CCCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCHHHHHHHHC
T ss_conf             6312478999999876-9859996999989999999987994436866999979139999980