HHsearch alignment for GI: 254781167 and conserved domain: pfam01180
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=99.55 E-value=5.3e-14 Score=123.04 Aligned_cols=175 Identities=19% Similarity=0.270 Sum_probs=130.4
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 74578469998269989999988753104537774425641367766688999985589999999998502790699986
Q gi|254781167|r 44 STQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC 123 (322)
Q Consensus 44 ~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~ 123 (322)
T Consensus 90 ~~~~~~vi~si~g~~~~d~~~~~~~~~~~-ad~iElNiScPn---~~--~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl 163 (290)
T pfam01180 90 YPRPLGIILSKAGSTVEDYVEVARKIGPF-ADYLELNVSCPN---TP--GLRALQTDPELAAILLKVVKEVSKVPVLVKL 163 (290)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCEEEEEEECCC---CC--CCHHHCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 38885378624669999999999999743-588999985368---87--6133404298999999998750478738983
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCCHHH-------HHHH--------HH----HHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 11345665322014554320001220121-------0013--------56----64025774212276610467876667
Q gi|254781167|r 124 RIGVDDQIPAVALRNLVKSIKKSGVNGIW-------IHAR--------KA----ILKGLSPKDNRKIPNLDYDIVYEIKK 184 (322)
Q Consensus 124 RlG~~~~~~~~~~~~~~~~~~~~g~~~it-------iH~R--------t~----~~~g~s~~~~~~~~~~~~~~i~~l~~ 184 (322)
T Consensus 164 sp------~~~~~~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~---i~~~al~~v~~~~~ 234 (290)
T pfam01180 164 AP------DLTDIVIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPA---IKPIALKVIRELYQ 234 (290)
T ss_pred CC------CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHH
T ss_conf 89------8774689999999718377689996587346555555566631256788857606---78999999999999
Q ss_pred HC-CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCC-CCHHHHHHHHHHHH
Q ss_conf 38-875302577778998988874-203523441220-00124399999987
Q gi|254781167|r 185 EN-PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAA-YKNSAMLTTVDEYF 233 (322)
Q Consensus 185 ~~-~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga-~~~P~if~~I~~~l 233 (322)
T Consensus 235 ~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~~Gp~~i~~i~~~L 286 (290)
T pfam01180 235 RVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIFGGPFIFPKIIDEL 286 (290)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7089974999889499999999998399799985899841917999999999