HHsearch alignment for GI: 254781167 and conserved domain: pfam01645
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=97.31 E-value=0.00039 Score=50.26 Aligned_cols=158 Identities=21% Similarity=0.255 Sum_probs=92.3
Q ss_pred EEEEE----ECCCHHHHHHHHHHHHCCCCCEEEECCCC----------CHHHHHHHH-------HHHHH--------HHH
Q ss_conf 69998----26998999998875310453777442564----------136776668-------89999--------855
Q gi|254781167|r 50 LALQI----GGADISKLVEAAKIVEDFGYNEINLNVGC----------PSARVHEGS-------FGACL--------MLN 100 (322)
Q Consensus 50 ~~~Ql----~g~~p~~~~~aa~~~~~~g~~~idlN~GC----------P~~~v~~~g-------~GaaL--------l~~ 100 (322)
T Consensus 115 ~I~Qi~sgrFGv~~~~l~~~---------~~iEIKi~QGAKPG~GG~Lpg~KVt~eIA~~R~~~~G~d~iSP~~h~di~s 185 (367)
T pfam01645 115 AIKQVASGRFGVTPEYLNNA---------DAIEIKIAQGAKPGEGGHLPGEKVSPEIARIRGSPPGVGLISPPPHHDIYS 185 (367)
T ss_pred CEEECCCCCCCCCHHHHCCC---------CEEEEEEECCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 17851367677897683256---------547999825878897883773544899996808999987678633478899
Q ss_pred HHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCHHHH
Q ss_conf 899999999985027-9069998611345665322014554320001220121001356640257742-12276610467
Q gi|254781167|r 101 PDIVGDCIAAMCKAL-SIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKD-NRKIPNLDYDI 178 (322)
Q Consensus 101 p~~~~~iv~~~~~~~-~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~-~~~~~~~~~~~ 178 (322)
T Consensus 186 ~edL~~~I~~Lr~~~~~~PVgvKl~~~~----~~---~~ia~~~aka~~D~I~IdG~eGGT-GAaP~~~~d~~Gl-P~~~ 256 (367)
T pfam01645 186 IEDLAQLIYDLKEINPKAPISVKLVSGH----GV---GTIAAGVAKAGADIILIDGHDGGT-GASPKTSIKHAGL-PWEL 256 (367)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCC----CH---HHHHHHHHCCCCCEEEECCCCCCC-CCCCHHHHHHCCC-HHHH
T ss_conf 9999999999984178994599981477----68---999998753678889971789867-7554889974424-6999
Q ss_pred -HHH----HHH-HC-CCCCCCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH
Q ss_conf -876----667-38-875302577778998988874-203523441220001243
Q gi|254781167|r 179 -VYE----IKK-EN-PDLFIGLNGGLEDMSQALKIL-PSVDGVMIGRAAYKNSAM 225 (322)
Q Consensus 179 -i~~----l~~-~~-~~~~i~~NGdi~~~~~a~~~l-~~~dgvMigRga~~~P~i 225 (322)
T Consensus 257 ~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~AlGC 311 (367)
T pfam01645 257 ALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIALGC 311 (367)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999998706757649997699788899999998565354234799998648