HHsearch alignment for GI: 254781167 and conserved domain: pfam03060
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=97.79 E-value=0.00089 Score=47.66 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=99.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH------------
Q ss_conf 97786078999999828982998170332477608978983027457846999826998999998875------------
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKI------------ 68 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~------------ 68 (322)
T Consensus 19 M~~vs~~~LaaAVs~AGglG~i~~~~~~~e~l~~-~i~~~~--~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
T pfam03060 19 MGGISTPELAAAVSEAGGLGVLGAGYLTPDRLEK-EIRKVK--ELTDKPFGVNLFLPQPAEGDDFALDPEEHLNAALKLA 95 (330)
T ss_pred CCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHH-HHHHHH--HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7767869999999967988861277699999999-999999--8648876313337885431456666775013678888
Q ss_pred --------------HHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC
Q ss_conf --------------310453777442564136776668899998558999999999850279069998611345665322
Q gi|254781167|r 69 --------------VEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAV 134 (322)
Q Consensus 69 --------------~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~ 134 (322)
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~-------------------~~v~~~~~-~G~~v~~~v----------- 144 (330)
T pfam03060 96 LEYGVPDYGDDDDSLKDAKPKVVSFGFGLPPE-------------------DVIERLKE-SGTKVIPTV----------- 144 (330)
T ss_pred HHCCCCCHHHHHHHHHHCCCCEEEECCCCCHH-------------------HHHHHHHH-CCCEEEEEC-----------
T ss_conf 75169837999999997499999989989827-------------------99999998-799899981-----------
Q ss_pred CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCE
Q ss_conf 01455432000122012100135664025774212276610467876667388753025777789989888742-03523
Q gi|254781167|r 135 ALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGV 213 (322)
Q Consensus 135 ~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgv 213 (322)
T Consensus 145 ~s~~~A~~a~~~G~D~iV~qG~eA--GGH~G~-~--~~~~~~~L~~~v~~~~-~iPvIaAGGI~dg~~iaaalalGA~gV 218 (330)
T pfam03060 145 SSAKEARKAEAAGADAVVAQGPEA--GGHRGT-E--VGTGTFLLVPTVVDAV-DIPVIAAGGIADGRGIAAALALGAEGV 218 (330)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCC--CCCCCC-C--CCCCHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 899999999981999899966766--777888-7--7730777789999871-697785266289999999996799899
Q ss_pred EEECCCCCHH
Q ss_conf 4412200012
Q gi|254781167|r 214 MIGRAAYKNS 223 (322)
Q Consensus 214 MigRga~~~P 223 (322)
T Consensus 219 ~mGTrFlat~ 228 (330)
T pfam03060 219 QIGTRFLATK 228 (330)
T ss_pred EECCEEEECC
T ss_conf 9713001157