RPSBLAST alignment for GI: 254781167 and conserved domain: TIGR00742

>gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. Length = 318
 Score =  349 bits (896), Expect = 7e-97
 Identities = 154/320 (48%), Positives = 206/320 (64%), Gaps = 9/320 (2%)

Query: 1   MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60
           M+DWTDRH+R+F RLL+ + LLYTEMI A AI+ GDKK+IL FS +E P+ALQ+GG+D +
Sbjct: 8   MLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPN 67

Query: 61  KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120
            L + AKI E  GY+EINLNVGCPS RV  G+FGACLM N D+V DC+ AM +A++IPVT
Sbjct: 68  DLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVT 127

Query: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180
           VK RIG+D       L + V+ +   G     +HARKA L GLSPK+NR+IP L Y+ VY
Sbjct: 128 VKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVY 187

Query: 181 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240
           ++KK+ P L I +NGG+++  Q  + L  VDGVM+GR AY+N  +L  VD    N    +
Sbjct: 188 QLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDREIFNE---T 244

Query: 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE 300
             I TR +      I   M  Y   +L  G  L  ITRH++GLF G P +++ R  L+  
Sbjct: 245 DEILTRKE------IVEQMLPYIEEYLSQGLSLNHITRHLLGLFQGKPGAKQWRRYLSEN 298

Query: 301 AGASTATHHIIETAFNLMIE 320
           A  + A   ++ETA   + E
Sbjct: 299 APKAGAGIEVLETALETVPE 318