RPSBLAST alignment for GI: 254781167 and conserved domain: TIGR00742
>gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. Length = 318
Score = 349 bits (896), Expect = 7e-97
Identities = 154/320 (48%), Positives = 206/320 (64%), Gaps = 9/320 (2%)
Query: 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60
M+DWTDRH+R+F RLL+ + LLYTEMI A AI+ GDKK+IL FS +E P+ALQ+GG+D +
Sbjct: 8 MLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPN 67
Query: 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120
L + AKI E GY+EINLNVGCPS RV G+FGACLM N D+V DC+ AM +A++IPVT
Sbjct: 68 DLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVT 127
Query: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180
VK RIG+D L + V+ + G +HARKA L GLSPK+NR+IP L Y+ VY
Sbjct: 128 VKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVY 187
Query: 181 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240
++KK+ P L I +NGG+++ Q + L VDGVM+GR AY+N +L VD N +
Sbjct: 188 QLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDREIFNE---T 244
Query: 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE 300
I TR + I M Y +L G L ITRH++GLF G P +++ R L+
Sbjct: 245 DEILTRKE------IVEQMLPYIEEYLSQGLSLNHITRHLLGLFQGKPGAKQWRRYLSEN 298
Query: 301 AGASTATHHIIETAFNLMIE 320
A + A ++ETA + E
Sbjct: 299 APKAGAGIEVLETALETVPE 318