BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] (322 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Length = 322 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/322 (100%), Positives = 322/322 (100%) Query: 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS Sbjct: 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60 Query: 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT Sbjct: 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 Query: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY Sbjct: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVY 180 Query: 181 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS Sbjct: 181 EIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS 240 Query: 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE 300 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE Sbjct: 241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVE 300 Query: 301 AGASTATHHIIETAFNLMIESL 322 AGASTATHHIIETAFNLMIESL Sbjct: 301 AGASTATHHIIETAFNLMIESL 322 >gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 13/48 (27%) Query: 158 AILKGLSPKDNRKIPNLDY-------------DIVYEIKKENPDLFIG 192 A+ GL KD R + D+ D V+E+K N D F+G Sbjct: 176 ALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLG 223 >gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 274 Score = 24.3 bits (51), Expect = 3.1, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 21/44 (47%) Query: 32 ILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYN 75 ++R D+++I F QI G D+S+ + K F +N Sbjct: 133 VVRSDQQDIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHN 176 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 250 DFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHG 286 D ++ S + LH+GGK Q + + G HG Sbjct: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 >gi|254780197|ref|YP_003064610.1| triosephosphate isomerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust. Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Query: 193 LNGGLEDMSQA--LKILPSVDGVMIGRAAYKNSAMLTTVD 230 L GG D++ A ++ ++DG+++G A+ ++ L V+ Sbjct: 209 LYGGSVDVANAEDFSLIENIDGLLVGGASLQHELFLKIVE 248 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.137 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 206,794 Number of Sequences: 1233 Number of extensions: 8476 Number of successful extensions: 33 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 6 length of query: 322 length of database: 328,796 effective HSP length: 74 effective length of query: 248 effective length of database: 237,554 effective search space: 58913392 effective search space used: 58913392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)