Query gi|254781168|ref|YP_003065581.1| hypothetical protein CLIBASIA_05375 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 05:26:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781168.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00699 GABAtrns_euk 4-amino 23.4 32 0.00082 17.6 0.8 12 12-23 286-297 (469)
2 pfam11170 DUF2957 Protein of u 18.5 49 0.0012 16.8 0.8 16 9-24 37-52 (361)
3 TIGR02335 hydr_PhnA phosphonoa 16.4 28 0.00071 17.9 -0.8 24 1-24 128-153 (408)
4 pfam10870 DUF2729 Protein of u 11.7 86 0.0022 15.6 0.6 10 13-22 40-49 (53)
5 pfam05851 Lentivirus_VIF Lenti 9.3 1.8E+02 0.0045 14.1 1.5 13 16-28 150-162 (250)
6 TIGR00067 glut_race glutamate 7.4 1.2E+02 0.0031 14.9 0.0 26 4-29 221-246 (262)
7 cd01255 PH_TIAM TIAM Pleckstri 7.1 2.6E+02 0.0067 13.3 1.6 25 3-28 115-139 (160)
8 TIGR01838 PHA_synth_I poly(R)- 6.4 1.9E+02 0.0049 14.0 0.6 18 5-26 254-271 (541)
9 pfam00187 Chitin_bind_1 Chitin 6.0 1.8E+02 0.0045 14.1 0.2 8 23-30 14-21 (38)
10 pfam01787 Ilar_coat Ilarvirus 5.6 3.3E+02 0.0083 12.8 1.6 11 20-30 103-113 (204)
No 1
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase; InterPro: IPR004631 4-aminobutyrate aminotransferase eukaryotic (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known eukaryotic examples of the enzyme. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=23.37 E-value=32 Score=17.64 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=9.6
Q ss_pred CCCCCEEEEEEE
Q ss_conf 234653689873
Q gi|254781168|r 12 EKKNNCAFIIKG 23 (30)
Q Consensus 12 ekknncafiikg 23 (30)
-||+||+|||.-
T Consensus 286 ~~k~~v~FivDE 297 (469)
T TIGR00699 286 TKKHNVAFIVDE 297 (469)
T ss_pred HHHCCCEEEEEE
T ss_conf 988595689964
No 2
>pfam11170 DUF2957 Protein of unknown function (DUF2957). Some members annotate the proteins to be putative lipoproteins however this cannot be confirmed. Currently no function is known for this family of proteins.
Probab=18.50 E-value=49 Score=16.79 Aligned_cols=16 Identities=31% Similarity=0.904 Sum_probs=12.3
Q ss_pred HCCCCCCCEEEEEEEE
Q ss_conf 1012346536898732
Q gi|254781168|r 9 ISSEKKNNCAFIIKGF 24 (30)
Q Consensus 9 issekknncafiikgf 24 (30)
....|.|+|||+..+-
T Consensus 37 LPTaeqnrCAF~L~~~ 52 (361)
T pfam11170 37 LPTAEQNRCAFVLNGA 52 (361)
T ss_pred CCCHHHCCEEEEECCC
T ss_conf 9814540428994577
No 3
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase; InterPro: IPR012710 This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile than the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by a large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for other specific phosphonatases ..
Probab=16.40 E-value=28 Score=17.94 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=16.6
Q ss_pred CCEEEHHHH--CCCCCCCEEEEEEEE
Q ss_conf 940220221--012346536898732
Q gi|254781168|r 1 MLAYELEHI--SSEKKNNCAFIIKGF 24 (30)
Q Consensus 1 mlayelehi--ssekknncafiikgf 24 (30)
.|+|+|.-| ||||-|.|..--.||
T Consensus 128 vLgh~l~GIcFSsEkad~~~l~ehGv 153 (408)
T TIGR02335 128 VLGHELKGICFSSEKADQVDLEEHGV 153 (408)
T ss_pred HHHHCCCEEEECCCCCCCCCHHHCCH
T ss_conf 74202661474267856247545042
No 4
>pfam10870 DUF2729 Protein of unknown function (DUF2729). This viral family of proteins has no known function.
Probab=11.71 E-value=86 Score=15.62 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=7.2
Q ss_pred CCCCEEEEEE
Q ss_conf 3465368987
Q gi|254781168|r 13 KKNNCAFIIK 22 (30)
Q Consensus 13 kknncafiik 22 (30)
-.|||-||--
T Consensus 40 iNNNCNFiYI 49 (53)
T pfam10870 40 INNNCNFIYI 49 (53)
T ss_pred ECCCCCEEEE
T ss_conf 8587548999
No 5
>pfam05851 Lentivirus_VIF Lentivirus virion infectivity factor (VIF). This family consists of several feline specific Lentivirus virion infectivity factor (VIF) proteins. VIF is essential for productive FIV infection of host target cells in vitro.
Probab=9.33 E-value=1.8e+02 Score=14.13 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=10.1
Q ss_pred CEEEEEEEEEECC
Q ss_conf 5368987323317
Q gi|254781168|r 16 NCAFIIKGFCCSS 28 (30)
Q Consensus 16 ncafiikgfccss 28 (30)
--+.|||.|+|..
T Consensus 150 ~iglvIKA~sC~e 162 (250)
T pfam05851 150 MVGVVIKAFSCGE 162 (250)
T ss_pred EEEEEEEEEECCC
T ss_conf 4899998853587
No 6
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=7.41 E-value=1.2e+02 Score=14.89 Aligned_cols=26 Identities=35% Similarity=0.227 Sum_probs=22.0
Q ss_pred EEHHHHCCCCCCCEEEEEEEEEECCC
Q ss_conf 22022101234653689873233178
Q gi|254781168|r 4 YELEHISSEKKNNCAFIIKGFCCSSH 29 (30)
Q Consensus 4 yelehissekknncafiikgfccssh 29 (30)
-.|||-..-+||.|||+-.-||.|.+
T Consensus 221 ~~L~~~~~l~ks~~aF~~~~F~~sg~ 246 (262)
T TIGR00067 221 KLLEHKGALKKSAIAFPDIEFLLSGT 246 (262)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHCCCC
T ss_conf 99987254447887621225440587
No 7
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=7.12 E-value=2.6e+02 Score=13.31 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=13.1
Q ss_pred EEEHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf 02202210123465368987323317
Q gi|254781168|r 3 AYELEHISSEKKNNCAFIIKGFCCSS 28 (30)
Q Consensus 3 ayelehissekknncafiikgfccss 28 (30)
-+|+-|+-||....-. -+--||||+
T Consensus 115 vwEiiH~kSe~EgRpE-~vfqlc~St 139 (160)
T cd01255 115 LWELIHLKSELEGRPE-KVFVLCCST 139 (160)
T ss_pred EEEEEEECCCCCCCCC-EEEEEECCC
T ss_conf 7999960243369860-489986299
No 8
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963 This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=6.41 E-value=1.9e+02 Score=13.96 Aligned_cols=18 Identities=39% Similarity=0.785 Sum_probs=14.3
Q ss_pred EHHHHCCCCCCCEEEEEEEEEE
Q ss_conf 2022101234653689873233
Q gi|254781168|r 5 ELEHISSEKKNNCAFIIKGFCC 26 (30)
Q Consensus 5 elehissekknncafiikgfcc 26 (30)
+.|.|+-|++-||. |||-
T Consensus 254 ~v~~itGe~~~N~~----GYCI 271 (541)
T TIGR01838 254 VVEEITGEKQVNAV----GYCI 271 (541)
T ss_pred HHHHHCCCEEEEEE----EEEH
T ss_conf 99861554065045----4104
No 9
>pfam00187 Chitin_bind_1 Chitin recognition protein.
Probab=6.04 E-value=1.8e+02 Score=14.13 Aligned_cols=8 Identities=50% Similarity=1.427 Sum_probs=0.0
Q ss_pred EEEECCCC
Q ss_conf 32331789
Q gi|254781168|r 23 GFCCSSHG 30 (30)
Q Consensus 23 gfccsshg 30 (30)
+.|||..|
T Consensus 14 ~lCCS~~G 21 (38)
T pfam00187 14 NLCCSQFG 21 (38)
T ss_pred CCCCCCCC
T ss_conf 86766777
No 10
>pfam01787 Ilar_coat Ilarvirus coat protein. This family consists of various coat proteins from the ilarviruses part of the Bromoviridae, members include apple mosaic virus and prune dwarf virus. The ilarvirus coat protein is required to initiate replication of the viral genome in host plants. Members of the Bromoviridae have a positive stand ssRNA genome with no DNA stage in there replication.
Probab=5.64 E-value=3.3e+02 Score=12.84 Aligned_cols=11 Identities=45% Similarity=0.884 Sum_probs=0.0
Q ss_pred EEEEEEECCCC
Q ss_conf 98732331789
Q gi|254781168|r 20 IIKGFCCSSHG 30 (30)
Q Consensus 20 iikgfccsshg 30 (30)
++-||+|+|.|
T Consensus 103 v~igf~~~sdG 113 (204)
T pfam01787 103 VVIGFVSSSDG 113 (204)
T ss_pred EEEEEEEECCC
T ss_conf 99999992486
Done!