Query         gi|254781168|ref|YP_003065581.1| hypothetical protein CLIBASIA_05375 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:33:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781168.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2cqea2 g.66.1.1 (A:429-457) Z  19.4     3.8 0.00028   19.9  -2.3   16   12-27      4-19  (29)
  2 d9wgaa3 g.3.1.1 (A:87-129) Whe   8.3      48  0.0035   14.7   0.6   12   16-30     11-22  (43)
  3 d9wgaa1 g.3.1.1 (A:1-52) Wheat   7.3      56  0.0041   14.3   0.6   12   16-30     11-22  (52)
  4 d1en2a1 g.3.1.1 (A:1-45) Isole   6.8      61  0.0045   14.1   0.6    8   23-30     15-22  (45)
  5 d1uhaa1 g.3.1.1 (A:1-42) Lecti   6.3      69   0.005   13.9   0.6    8   23-30     16-23  (42)
  6 d1foea2 b.55.1.1 (A:1240-1401)   6.1 1.1E+02  0.0077   13.0   1.9   24    4-28    117-140 (162)
  7 d1wmta_ g.3.7.2 (A:) Istx {Sco   5.2      63  0.0046   14.1  -0.1    7   12-18     18-24  (41)
  8 d2bcgg2 c.3.1.3 (G:400-446) Gu   4.9   1E+02  0.0075   13.1   0.8   20    9-29      2-21  (47)
  9 d1g1pa_ g.3.6.1 (A:) Conotoxin   3.6      99  0.0072   13.1  -0.1    5   23-27     18-22  (32)
 10 d1qgva_ c.47.1.8 (A:) spliceos   3.4      93  0.0068   13.3  -0.5   10    4-13      2-11  (137)

No 1  
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.37  E-value=3.8  Score=19.87  Aligned_cols=16  Identities=44%  Similarity=1.080  Sum_probs=13.2

Q ss_pred             CCCCCEEEEEEEEEEC
Q ss_conf             2346536898732331
Q gi|254781168|r   12 EKKNNCAFIIKGFCCS   27 (30)
Q Consensus        12 ekknncafiikgfccs   27 (30)
                      .||.-|.|-|.|||..
T Consensus         4 kkkelCKfYvqGyCtr   19 (29)
T d2cqea2           4 KKRELCKFYITGFCAR   19 (29)
T ss_dssp             CCCSBCTTTTTTCCSC
T ss_pred             HHHHHHHHHEEEEECC
T ss_conf             4666666320213427


No 2  
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Probab=8.30  E-value=48  Score=14.65  Aligned_cols=12  Identities=42%  Similarity=1.090  Sum_probs=8.4

Q ss_pred             CEEEEEEEEEECCCC
Q ss_conf             536898732331789
Q gi|254781168|r   16 NCAFIIKGFCCSSHG   30 (30)
Q Consensus        16 ncafiikgfccsshg   30 (30)
                      .|++   |.|||..|
T Consensus        11 ~C~~---g~CCS~~G   22 (43)
T d9wgaa3          11 LCPN---NLCCSQWG   22 (43)
T ss_dssp             CCGG---GCEECTTS
T ss_pred             CCCC---CCEECCCC
T ss_conf             4979---87318886


No 3  
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]}
Probab=7.34  E-value=56  Score=14.32  Aligned_cols=12  Identities=42%  Similarity=1.160  Sum_probs=8.1

Q ss_pred             CEEEEEEEEEECCCC
Q ss_conf             536898732331789
Q gi|254781168|r   16 NCAFIIKGFCCSSHG   30 (30)
Q Consensus        16 ncafiikgfccsshg   30 (30)
                      .|.+   |.|||..|
T Consensus        11 ~C~~---g~CCS~~G   22 (52)
T d9wgaa1          11 ECPN---NLCCSQYG   22 (52)
T ss_dssp             CCGG---GCEECTTS
T ss_pred             CCCC---CCEECCCC
T ss_conf             4989---87118876


No 4  
>d1en2a1 g.3.1.1 (A:1-45) Isolectin VI {Stinging nettle (Urtica dioica), UDA [TaxId: 3501]}
Probab=6.79  E-value=61  Score=14.13  Aligned_cols=8  Identities=50%  Similarity=1.182  Sum_probs=0.0

Q ss_pred             EEEECCCC
Q ss_conf             32331789
Q gi|254781168|r   23 GFCCSSHG   30 (30)
Q Consensus        23 gfccsshg   30 (30)
                      |.|||..|
T Consensus        15 g~CCS~~G   22 (45)
T d1en2a1          15 LWCCSIWG   22 (45)
T ss_dssp             GCEEETTS
T ss_pred             CCEECCCC
T ss_conf             78109886


No 5  
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=6.26  E-value=69  Score=13.89  Aligned_cols=8  Identities=63%  Similarity=1.435  Sum_probs=0.0

Q ss_pred             EEEECCCC
Q ss_conf             32331789
Q gi|254781168|r   23 GFCCSSHG   30 (30)
Q Consensus        23 gfccsshg   30 (30)
                      |.|||..|
T Consensus        16 g~CCS~~G   23 (42)
T d1uhaa1          16 GKCCSQWG   23 (42)
T ss_dssp             GCEECTTS
T ss_pred             CCCCCCCC
T ss_conf             78048787


No 6  
>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.14  E-value=1.1e+02  Score=13.00  Aligned_cols=24  Identities=33%  Similarity=0.678  Sum_probs=0.0

Q ss_pred             EEHHHHCCCCCCCEEEEEEEEEECC
Q ss_conf             2202210123465368987323317
Q gi|254781168|r    4 YELEHISSEKKNNCAFIIKGFCCSS   28 (30)
Q Consensus         4 yelehissekknncafiikgfccss   28 (30)
                      +|+-|+-||....-.-+.. ||||+
T Consensus       117 wEiiH~kSe~egRpE~vfq-lc~St  140 (162)
T d1foea2         117 CEIVHVKSESEGRPERVFH-LCCSS  140 (162)
T ss_dssp             EEEEECCBTGGGBCCEEEE-EEESS
T ss_pred             EEEEEECCCCCCCCCEEEE-EECCC
T ss_conf             9999602311588605999-86299


No 7  
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=5.19  E-value=63  Score=14.08  Aligned_cols=7  Identities=86%  Similarity=1.251  Sum_probs=0.0

Q ss_pred             CCCCCEE
Q ss_conf             2346536
Q gi|254781168|r   12 EKKNNCA   18 (30)
Q Consensus        12 ekknnca   18 (30)
                      |||-|||
T Consensus        18 ekkynca   24 (41)
T d1wmta_          18 EKKYNCA   24 (41)
T ss_dssp             HHTTSCC
T ss_pred             HHHHCHH
T ss_conf             8753558


No 8  
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.93  E-value=1e+02  Score=13.05  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=0.0

Q ss_pred             HCCCCCCCEEEEEEEEEECCC
Q ss_conf             101234653689873233178
Q gi|254781168|r    9 ISSEKKNNCAFIIKGFCCSSH   29 (30)
Q Consensus         9 issekknncafiikgfccssh   29 (30)
                      +...+++|| ||-|.+-.+||
T Consensus         2 ~~dG~~d~i-fISkSYDAtsH   21 (47)
T d2bcgg2           2 REDGSKDNI-YLSRSYDASSH   21 (47)
T ss_dssp             SSCSTTTSE-EECCCCCSCSB
T ss_pred             CCCCCCCCE-EEECCCCCCCH
T ss_conf             876754777-88467375313


No 9  
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=3.63  E-value=99  Score=13.14  Aligned_cols=5  Identities=80%  Similarity=2.248  Sum_probs=0.0

Q ss_pred             EEEEC
Q ss_conf             32331
Q gi|254781168|r   23 GFCCS   27 (30)
Q Consensus        23 gfccs   27 (30)
                      |.|||
T Consensus        18 glccs   22 (32)
T d1g1pa_          18 GLCCS   22 (32)
T ss_dssp             CCBTT
T ss_pred             CCCCC
T ss_conf             71006


No 10 
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.37  E-value=93  Score=13.27  Aligned_cols=10  Identities=30%  Similarity=0.484  Sum_probs=0.0

Q ss_pred             EEHHHHCCCC
Q ss_conf             2202210123
Q gi|254781168|r    4 YELEHISSEK   13 (30)
Q Consensus         4 yelehissek   13 (30)
                      |+|+||.|.+
T Consensus         2 ~~l~~l~s~~   11 (137)
T d1qgva_           2 YMLPHLHNGW   11 (137)
T ss_dssp             CSSCBCCSHH
T ss_pred             CCCCCCCCHH
T ss_conf             4132558889


Done!