Query gi|254781168|ref|YP_003065581.1| hypothetical protein CLIBASIA_05375 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 30 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:33:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781168.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2cqea2 g.66.1.1 (A:429-457) Z 19.4 3.8 0.00028 19.9 -2.3 16 12-27 4-19 (29) 2 d9wgaa3 g.3.1.1 (A:87-129) Whe 8.3 48 0.0035 14.7 0.6 12 16-30 11-22 (43) 3 d9wgaa1 g.3.1.1 (A:1-52) Wheat 7.3 56 0.0041 14.3 0.6 12 16-30 11-22 (52) 4 d1en2a1 g.3.1.1 (A:1-45) Isole 6.8 61 0.0045 14.1 0.6 8 23-30 15-22 (45) 5 d1uhaa1 g.3.1.1 (A:1-42) Lecti 6.3 69 0.005 13.9 0.6 8 23-30 16-23 (42) 6 d1foea2 b.55.1.1 (A:1240-1401) 6.1 1.1E+02 0.0077 13.0 1.9 24 4-28 117-140 (162) 7 d1wmta_ g.3.7.2 (A:) Istx {Sco 5.2 63 0.0046 14.1 -0.1 7 12-18 18-24 (41) 8 d2bcgg2 c.3.1.3 (G:400-446) Gu 4.9 1E+02 0.0075 13.1 0.8 20 9-29 2-21 (47) 9 d1g1pa_ g.3.6.1 (A:) Conotoxin 3.6 99 0.0072 13.1 -0.1 5 23-27 18-22 (32) 10 d1qgva_ c.47.1.8 (A:) spliceos 3.4 93 0.0068 13.3 -0.5 10 4-13 2-11 (137) No 1 >d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Probab=19.37 E-value=3.8 Score=19.87 Aligned_cols=16 Identities=44% Similarity=1.080 Sum_probs=13.2 Q ss_pred CCCCCEEEEEEEEEEC Q ss_conf 2346536898732331 Q gi|254781168|r 12 EKKNNCAFIIKGFCCS 27 (30) Q Consensus 12 ekknncafiikgfccs 27 (30) .||.-|.|-|.|||.. T Consensus 4 kkkelCKfYvqGyCtr 19 (29) T d2cqea2 4 KKRELCKFYITGFCAR 19 (29) T ss_dssp CCCSBCTTTTTTCCSC T ss_pred HHHHHHHHHEEEEECC T ss_conf 4666666320213427 No 2 >d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Probab=8.30 E-value=48 Score=14.65 Aligned_cols=12 Identities=42% Similarity=1.090 Sum_probs=8.4 Q ss_pred CEEEEEEEEEECCCC Q ss_conf 536898732331789 Q gi|254781168|r 16 NCAFIIKGFCCSSHG 30 (30) Q Consensus 16 ncafiikgfccsshg 30 (30) .|++ |.|||..| T Consensus 11 ~C~~---g~CCS~~G 22 (43) T d9wgaa3 11 LCPN---NLCCSQWG 22 (43) T ss_dssp CCGG---GCEECTTS T ss_pred CCCC---CCEECCCC T ss_conf 4979---87318886 No 3 >d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Probab=7.34 E-value=56 Score=14.32 Aligned_cols=12 Identities=42% Similarity=1.160 Sum_probs=8.1 Q ss_pred CEEEEEEEEEECCCC Q ss_conf 536898732331789 Q gi|254781168|r 16 NCAFIIKGFCCSSHG 30 (30) Q Consensus 16 ncafiikgfccsshg 30 (30) .|.+ |.|||..| T Consensus 11 ~C~~---g~CCS~~G 22 (52) T d9wgaa1 11 ECPN---NLCCSQYG 22 (52) T ss_dssp CCGG---GCEECTTS T ss_pred CCCC---CCEECCCC T ss_conf 4989---87118876 No 4 >d1en2a1 g.3.1.1 (A:1-45) Isolectin VI {Stinging nettle (Urtica dioica), UDA [TaxId: 3501]} Probab=6.79 E-value=61 Score=14.13 Aligned_cols=8 Identities=50% Similarity=1.182 Sum_probs=0.0 Q ss_pred EEEECCCC Q ss_conf 32331789 Q gi|254781168|r 23 GFCCSSHG 30 (30) Q Consensus 23 gfccsshg 30 (30) |.|||..| T Consensus 15 g~CCS~~G 22 (45) T d1en2a1 15 LWCCSIWG 22 (45) T ss_dssp GCEEETTS T ss_pred CCEECCCC T ss_conf 78109886 No 5 >d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Probab=6.26 E-value=69 Score=13.89 Aligned_cols=8 Identities=63% Similarity=1.435 Sum_probs=0.0 Q ss_pred EEEECCCC Q ss_conf 32331789 Q gi|254781168|r 23 GFCCSSHG 30 (30) Q Consensus 23 gfccsshg 30 (30) |.|||..| T Consensus 16 g~CCS~~G 23 (42) T d1uhaa1 16 GKCCSQWG 23 (42) T ss_dssp GCEECTTS T ss_pred CCCCCCCC T ss_conf 78048787 No 6 >d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.14 E-value=1.1e+02 Score=13.00 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=0.0 Q ss_pred EEHHHHCCCCCCCEEEEEEEEEECC Q ss_conf 2202210123465368987323317 Q gi|254781168|r 4 YELEHISSEKKNNCAFIIKGFCCSS 28 (30) Q Consensus 4 yelehissekknncafiikgfccss 28 (30) +|+-|+-||....-.-+.. ||||+ T Consensus 117 wEiiH~kSe~egRpE~vfq-lc~St 140 (162) T d1foea2 117 CEIVHVKSESEGRPERVFH-LCCSS 140 (162) T ss_dssp EEEEECCBTGGGBCCEEEE-EEESS T ss_pred EEEEEECCCCCCCCCEEEE-EECCC T ss_conf 9999602311588605999-86299 No 7 >d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]} Probab=5.19 E-value=63 Score=14.08 Aligned_cols=7 Identities=86% Similarity=1.251 Sum_probs=0.0 Q ss_pred CCCCCEE Q ss_conf 2346536 Q gi|254781168|r 12 EKKNNCA 18 (30) Q Consensus 12 ekknnca 18 (30) |||-||| T Consensus 18 ekkynca 24 (41) T d1wmta_ 18 EKKYNCA 24 (41) T ss_dssp HHTTSCC T ss_pred HHHHCHH T ss_conf 8753558 No 8 >d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.93 E-value=1e+02 Score=13.05 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=0.0 Q ss_pred HCCCCCCCEEEEEEEEEECCC Q ss_conf 101234653689873233178 Q gi|254781168|r 9 ISSEKKNNCAFIIKGFCCSSH 29 (30) Q Consensus 9 issekknncafiikgfccssh 29 (30) +...+++|| ||-|.+-.+|| T Consensus 2 ~~dG~~d~i-fISkSYDAtsH 21 (47) T d2bcgg2 2 REDGSKDNI-YLSRSYDASSH 21 (47) T ss_dssp SSCSTTTSE-EECCCCCSCSB T ss_pred CCCCCCCCE-EEECCCCCCCH T ss_conf 876754777-88467375313 No 9 >d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]} Probab=3.63 E-value=99 Score=13.14 Aligned_cols=5 Identities=80% Similarity=2.248 Sum_probs=0.0 Q ss_pred EEEEC Q ss_conf 32331 Q gi|254781168|r 23 GFCCS 27 (30) Q Consensus 23 gfccs 27 (30) |.||| T Consensus 18 glccs 22 (32) T d1g1pa_ 18 GLCCS 22 (32) T ss_dssp CCBTT T ss_pred CCCCC T ss_conf 71006 No 10 >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Probab=3.37 E-value=93 Score=13.27 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=0.0 Q ss_pred EEHHHHCCCC Q ss_conf 2202210123 Q gi|254781168|r 4 YELEHISSEK 13 (30) Q Consensus 4 yelehissek 13 (30) |+|+||.|.+ T Consensus 2 ~~l~~l~s~~ 11 (137) T d1qgva_ 2 YMLPHLHNGW 11 (137) T ss_dssp CSSCBCCSHH T ss_pred CCCCCCCCHH T ss_conf 4132558889 Done!