Query gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs 130 out of 259
Neff 4.7
Searched_HMMs 23785
Date Wed Jun 1 01:44:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781169.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hzq_A Large-conductance mecha 33.5 17 0.0007 14.0 1.9 18 376-393 44-61 (114)
2 2kbv_A Sodium/hydrogen exchang 21.7 21 0.00089 13.3 0.6 15 371-385 5-19 (28)
3 3lge_E Sorting nexin-9; comple 17.8 21 0.00089 13.3 -0.0 27 207-233 4-30 (31)
4 2z3x_A SAsp, small, acid-solub 17.8 11 0.00048 15.1 -1.4 12 304-315 2-13 (63)
5 1xfj_A Conserved hypothetical 12.7 15 0.00063 14.3 -1.9 37 357-398 113-149 (261)
6 1t8h_A YLMD protein sequence h 12.3 17 0.00071 14.0 -1.8 35 359-398 129-163 (277)
7 1ccd_A Clara cell 17 KD protei 11.9 48 0.002 10.9 1.5 36 293-329 2-37 (77)
8 1rv9_A Conserved hypothetical 11.9 32 0.0013 12.1 -0.4 36 358-398 118-153 (259)
9 1j1v_A Chromosomal replication 11.5 49 0.0021 10.8 0.6 14 205-218 50-63 (94)
10 2oar_A Large-conductance mecha 11.4 50 0.0021 10.8 5.8 16 379-394 50-65 (174)
No 1
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=33.55 E-value=17 Score=13.99 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 638899999999989999
Q gi|254781169|r 376 GGWRAASKICFVMGVIEI 393 (461)
Q Consensus 376 GG~rgAiig~fv~Gii~~ 393 (461)
|+-=++++.|+++.++.-
T Consensus 44 G~AF~aiV~slV~diimP 61 (114)
T 3hzq_A 44 GAAFNKIICSLVENIIMP 61 (114)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998888
No 2
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=21.65 E-value=21 Score=13.29 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=9.8
Q ss_pred HHCCCCCHHHHHHHH
Q ss_conf 421346388999999
Q gi|254781169|r 371 FANHYGGWRAASKIC 385 (461)
Q Consensus 371 fgNa~GG~rgAiig~ 385 (461)
|--+.||.|||+.-|
T Consensus 5 fiiaygglrgaiafs 19 (28)
T 2kbv_A 5 FIIAYGGLRGAIAFS 19 (28)
T ss_dssp HHTTTTSSCHHHHHH
T ss_pred EEEEECCCCHHHHEE
T ss_conf 999946732312100
No 3
>3lge_E Sorting nexin-9; complex, glycolysis, actin dynamics, LC4, hydrophobic pocket acetylation, lyase, phosphoprotein, schiff base; 2.20A {Oryctolagus cuniculus}
Probab=17.84 E-value=21 Score=13.29 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=22.4
Q ss_pred HHHHCCCCCCCHHHHCCCCHHHHHHHH
Q ss_conf 975618820073431288314687631
Q gi|254781169|r 207 IAPYLGDRSENINSLKLSKWLVLLNNY 233 (461)
Q Consensus 207 ig~~~G~k~~stE~iklPk~L~flrD~ 233 (461)
-|+..|+.++=-||-.=||+-|.|+|+
T Consensus 4 qgpatgddddwdedwdgpksssyfkds 30 (31)
T 3lge_E 4 QGPATGDDDDWDEDWDGPKSSSYFKDS 30 (31)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 577767654430126786442420257
No 4
>2z3x_A SAsp, small, acid-soluble spore protein C; alpha/beta-type SAsp, bacillus subtils spore; 2.10A {Bacillus subtilis}
Probab=17.80 E-value=11 Score=15.08 Aligned_cols=12 Identities=50% Similarity=0.589 Sum_probs=6.3
Q ss_pred HHHCCCCCHHCC
Q ss_conf 764699800200
Q gi|254781169|r 304 TSLIPGAILAID 315 (461)
Q Consensus 304 eKliP~A~PAlD 315 (461)
..+||.|+.|+|
T Consensus 2 k~lVP~A~~aLd 13 (63)
T 2z3x_A 2 KLLIPQAASAIE 13 (63)
T ss_dssp CCSSGGGHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 746577999999
No 5
>1xfj_A Conserved hypothetical protein; structural genomics, protein structure initiative (PSI), alpha-beta-BETA-alpha, two-domain structure; 1.75A {Caulobacter vibrioides} SCOP: d.194.1.2
Probab=12.72 E-value=15 Score=14.32 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=25.1
Q ss_pred HHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 568875375057654213463889999999998999999999
Q gi|254781169|r 357 GFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIW 398 (461)
Q Consensus 357 g~i~~FF~gatagVfgNa~GG~rgAiig~fv~Gii~~~~~a~ 398 (461)
-=+|.+|..-..++.|....||||.+- |++......+
T Consensus 113 DC~PVll~d~~~~~iaavHaGWrG~~~-----gI~~~~i~~~ 149 (261)
T 1xfj_A 113 DCAPVLLVDPEARIVAAAHAGWRGALD-----GVVQSAVDRM 149 (261)
T ss_dssp SSEEEEEEETTTTEEEEEEECHHHHHH-----THHHHHHHHH
T ss_pred CCEEEEEEECCCCEEEEEECCCHHHHC-----CCHHHHHHHH
T ss_conf 522799996787828996033554543-----7689999999
No 6
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=12.35 E-value=17 Score=13.97 Aligned_cols=35 Identities=23% Similarity=0.693 Sum_probs=24.3
Q ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8875375057654213463889999999998999999999
Q gi|254781169|r 359 IPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIW 398 (461)
Q Consensus 359 i~~FF~gatagVfgNa~GG~rgAiig~fv~Gii~~~~~a~ 398 (461)
+|.+|..-..++.|-...||||++ +|++......+
T Consensus 129 ~PIll~d~~~~~iaavHAGWRG~~-----~gIi~~~i~~m 163 (277)
T 1t8h_A 129 VPIYFVAPSAGLVGLAHAGWRGTA-----GGIAGHMVWLW 163 (277)
T ss_dssp EEEEEEETTTTEEEEEEECHHHHH-----TTHHHHHHHHH
T ss_pred EEEEEEECCCCEEEEECCCCCCHH-----HHHHHHHHHHH
T ss_conf 016787057988999715873265-----51699999998
No 7
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=11.91 E-value=48 Score=10.92 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCHHHHHCCCCHHHHH
Q ss_conf 9899998988876469980020077750857676899
Q gi|254781169|r 293 KELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIW 329 (461)
Q Consensus 293 ~EivpAFkGIseKliP~A~PAlDcpv~F~yaPNAVli 329 (461)
+||-|||+..=+.+.-|.--. =...+=+|.||+.+.
T Consensus 2 ~~iCPa~~~~V~~fl~GT~ee-Y~~~vk~y~~d~d~l 37 (77)
T 1ccd_A 2 SDICPGFLQVLEALLLGSESN-YEAALKPFNPASDLQ 37 (77)
T ss_dssp TTSCHHHHHHHHHHTTSCHHH-HHHHHTTTCCCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHH-HHHHHHCCCCCHHHH
T ss_conf 520588999999997698899-999997359989999
No 8
>1rv9_A Conserved hypothetical protein NMB0706; alpha-beta-BETA-alpha structure, structural genomics, PSI, protein structure initiative; 1.53A {Neisseria meningitidis} SCOP: d.194.1.2
Probab=11.85 E-value=32 Score=12.08 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=24.8
Q ss_pred HHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68875375057654213463889999999998999999999
Q gi|254781169|r 358 FIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIW 398 (461)
Q Consensus 358 ~i~~FF~gatagVfgNa~GG~rgAiig~fv~Gii~~~~~a~ 398 (461)
=+|.+|..-.-++.|...-||||.. .|++......+
T Consensus 118 CvPVll~d~~~~~iaavHaGWrG~~-----~gIi~~ti~~m 153 (259)
T 1rv9_A 118 CLPVLFCDRAGTAVAAAHAGWRGLA-----GGVLQNTIAAM 153 (259)
T ss_dssp SEEEEEEETTSSCEEEEEECHHHHH-----HTHHHHHHHHH
T ss_pred CEEEEEEECCCCEEEEECCCCCCHH-----HHHHHHHHHHH
T ss_conf 1158998178887987435451155-----44889999987
No 9
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=11.46 E-value=49 Score=10.83 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=8.4
Q ss_pred HHHHHHCCCCCCCH
Q ss_conf 99975618820073
Q gi|254781169|r 205 YKIAPYLGDRSENI 218 (461)
Q Consensus 205 ~~ig~~~G~k~~st 218 (461)
.-+|+.||+++.||
T Consensus 50 ~~IG~~fg~RdHsT 63 (94)
T 1j1v_A 50 PEIGDAFGGRDHTT 63 (94)
T ss_dssp HHHHHHTTSCCHHH
T ss_pred HHHHHHHCCCCCCH
T ss_conf 99999968998409
No 10
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=11.37 E-value=50 Score=10.81 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999899999
Q gi|254781169|r 379 RAASKICFVMGVIEIL 394 (461)
Q Consensus 379 rgAiig~fv~Gii~~~ 394 (461)
=++++-|+++.+++-.
T Consensus 50 F~~IV~SlV~dIImPl 65 (174)
T 2oar_A 50 FTALVTKFTDSIITPL 65 (174)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999998754213
Done!