Query gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 461 No_of_seqs 130 out of 259 Neff 4.7 Searched_HMMs 13730 Date Wed Jun 1 11:45:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781169.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2d69a2 d.58.9.1 (A:8-133) Rib 23.5 10 0.00076 13.7 0.6 32 196-227 88-122 (126) 2 d1geha2 d.58.9.1 (A:12-136) Ri 21.6 12 0.00087 13.3 0.6 31 197-227 88-121 (125) 3 d1svda2 d.58.9.1 (A:16-142) Ri 19.7 16 0.0011 12.6 0.9 33 195-227 87-122 (127) 4 d1vcoa2 c.37.1.10 (A:11-282) C 17.8 19 0.0014 12.1 0.9 11 77-87 33-43 (272) 5 d1wdda2 d.58.9.1 (A:11-150) Ri 16.9 19 0.0014 12.0 0.8 33 195-227 99-134 (140) 6 d1bwva2 d.58.9.1 (A:7-149) Rib 16.4 16 0.0012 12.4 0.3 33 195-227 104-139 (144) 7 d1xfja_ d.194.1.2 (A:) Hypothe 14.9 6.8 0.0005 15.0 -1.9 36 357-397 109-144 (256) 8 d1ccda_ a.101.1.1 (A:) Clara c 14.5 23 0.0017 11.4 1.6 36 293-329 2-37 (77) 9 d1j1va_ a.4.12.2 (A:) Chromoso 13.1 25 0.0018 11.2 0.6 14 205-218 50-63 (94) 10 d1t8ha_ d.194.1.2 (A:) Hypothe 10.6 12 0.00087 13.3 -1.8 36 359-399 126-161 (272) No 1 >d2d69a2 d.58.9.1 (A:8-133) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=23.52 E-value=10 Score=13.74 Aligned_cols=32 Identities=3% Similarity=-0.003 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHHHCCCC---CCCHHHHCCCCHH Q ss_conf 1469999999997561882---0073431288314 Q gi|254781169|r 196 QQQVASWIAYKIAPYLGDR---SENINSLKLSKWL 227 (461) Q Consensus 196 ~~~~~~~~a~~ig~~~G~k---~~stE~iklPk~L 227 (461) -+++...+++.+|..||=| .-+.||+.+|+.. T Consensus 88 eGsv~nlltsI~GNvfG~kav~aLRLeD~r~P~ay 122 (126) T d2d69a2 88 EGSLVQLFSAVAGNVFGMKALKNLRLLDFHPPYEY 122 (126) T ss_dssp TTCHHHHHHHHTTGGGGCTTEEEEEEEEEECCHHH T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH T ss_conf 54245677775155133036543024240488999 No 2 >d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} Probab=21.57 E-value=12 Score=13.34 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=26.3 Q ss_pred HHHHHHHHHHHHHHCCCCC---CCHHHHCCCCHH Q ss_conf 4699999999975618820---073431288314 Q gi|254781169|r 197 QQVASWIAYKIAPYLGDRS---ENINSLKLSKWL 227 (461) Q Consensus 197 ~~~~~~~a~~ig~~~G~k~---~stE~iklPk~L 227 (461) +++-..+++.+|..||=|. -+.||+.+|+.. T Consensus 88 gsv~nlltsi~GNvfG~kal~alRLeD~r~P~a~ 121 (125) T d1geha2 88 ANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKL 121 (125) T ss_dssp TCHHHHHHHHTSGGGGCTTEEECEEEEEECCHHH T ss_pred CCHHHHHHHHHCCCCCCCHHHCCEECCCCCCHHH T ss_conf 5066777776063025421102031020389889 No 3 >d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Halothiobacillus neapolitanus [TaxId: 927]} Probab=19.75 E-value=16 Score=12.58 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=26.9 Q ss_pred EHHHHHHHHHHHHHHHCCCCC---CCHHHHCCCCHH Q ss_conf 014699999999975618820---073431288314 Q gi|254781169|r 195 HQQQVASWIAYKIAPYLGDRS---ENINSLKLSKWL 227 (461) Q Consensus 195 H~~~~~~~~a~~ig~~~G~k~---~stE~iklPk~L 227 (461) .-+++...+++.+|..||=|. -+.||+.+|... T Consensus 87 EeGsv~n~ltsI~GNvfGmKal~alRLeD~riP~ay 122 (127) T d1svda2 87 EEGSVVNVFTSLVGNVFGFKAVRGLRLEDVRFPLAY 122 (127) T ss_dssp CTTCHHHHHHHHHSSGGGCTTEEEEEEEEEECCHHH T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHH T ss_conf 520056777775044100466655244014589899 No 4 >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=17.85 E-value=19 Score=12.06 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.4 Q ss_pred HCCCEECCCHH Q ss_conf 18802525828 Q gi|254781169|r 77 HHIDGSIIDPY 87 (461) Q Consensus 77 f~~~gvv~~~~ 87 (461) +.+.-.=.||| T Consensus 33 ~~v~~~K~DpY 43 (272) T d1vcoa2 33 YRVTAIKIDPY 43 (272) T ss_dssp CCEEEEEEECS T ss_pred CCEEEEEECCC T ss_conf 86047740453 No 5 >d1wdda2 d.58.9.1 (A:11-150) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} Probab=16.87 E-value=19 Score=11.97 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=26.8 Q ss_pred EHHHHHHHHHHHHHHHCCCC---CCCHHHHCCCCHH Q ss_conf 01469999999997561882---0073431288314 Q gi|254781169|r 195 HQQQVASWIAYKIAPYLGDR---SENINSLKLSKWL 227 (461) Q Consensus 195 H~~~~~~~~a~~ig~~~G~k---~~stE~iklPk~L 227 (461) --+++...+++.+|..||=| .-+.||+.+|... T Consensus 99 EeGsv~nlltsIvGNvfGmKav~alRLeD~r~P~ay 134 (140) T d1wdda2 99 EEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPTY 134 (140) T ss_dssp CTTCHHHHHHHHHSSGGGBTTEEEEEEEEEECCHHH T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHH T ss_conf 785187777876354112255401202001589899 No 6 >d1bwva2 d.58.9.1 (A:7-149) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]} Probab=16.39 E-value=16 Score=12.42 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.0 Q ss_pred EHHHHHHHHHHHHHHHCCCCC---CCHHHHCCCCHH Q ss_conf 014699999999975618820---073431288314 Q gi|254781169|r 195 HQQQVASWIAYKIAPYLGDRS---ENINSLKLSKWL 227 (461) Q Consensus 195 H~~~~~~~~a~~ig~~~G~k~---~stE~iklPk~L 227 (461) .-+++...+++.+|..||=|. -..||+.+|... T Consensus 104 EeGsv~nlltsI~GNVFGfKav~aLRLeD~riP~ay 139 (144) T d1bwva2 104 EEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAY 139 (144) T ss_dssp CTTCHHHHHHHHTSSGGGCTTEEEEEEEEEECCHHH T ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHH T ss_conf 663177888875044212266554133113599899 No 7 >d1xfja_ d.194.1.2 (A:) Hypothetical protein CC0490 {Caulobacter crescentus [TaxId: 155892]} Probab=14.89 E-value=6.8 Score=14.98 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=25.5 Q ss_pred HHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 56887537505765421346388999999999899999999 Q gi|254781169|r 357 GFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSI 397 (461) Q Consensus 357 g~i~~FF~gatagVfgNa~GG~rgAiig~fv~Gii~~~~~a 397 (461) -=+|.+|..-..++.|....||||.+- |++...... T Consensus 109 DC~PIll~d~~~~~ia~vHaGWrG~~~-----gI~~~~i~~ 144 (256) T d1xfja_ 109 DCAPVLLVDPEARIVAAAHAGWRGALD-----GVVQSAVDR 144 (256) T ss_dssp SSEEEEEEETTTTEEEEEEECHHHHHH-----THHHHHHHH T ss_pred HHHHHHEECCCCCEEEEECCCCCCHHC-----CCCHHHHHH T ss_conf 102344010354268872112433330-----661378899 No 8 >d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=14.54 E-value=23 Score=11.42 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=21.6 Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCHHHHHCCCCHHHHH Q ss_conf 9899998988876469980020077750857676899 Q gi|254781169|r 293 KELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIW 329 (461) Q Consensus 293 ~EivpAFkGIseKliP~A~PAlDcpv~F~yaPNAVli 329 (461) +||-|||+-.-+.+.-|.--. =...+=+|.||+.+. T Consensus 2 ~~iCPa~~~~V~~fl~GT~ee-Y~~~vk~y~~d~~~l 37 (77) T d1ccda_ 2 SDICPGFLQVLEALLLGSESN-YEAALKPFNPASDLQ 37 (77) T ss_dssp TTSCHHHHHHHHHHTTSCHHH-HHHHHTTTCCCHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHH-HHHHHHCCCCCHHHH T ss_conf 631688999999997698899-999997259989999 No 9 >d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]} Probab=13.12 E-value=25 Score=11.20 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=8.8 Q ss_pred HHHHHHCCCCCCCH Q ss_conf 99975618820073 Q gi|254781169|r 205 YKIAPYLGDRSENI 218 (461) Q Consensus 205 ~~ig~~~G~k~~st 218 (461) .-+|+.||+++.|| T Consensus 50 ~~Ig~~fg~rdHsT 63 (94) T d1j1va_ 50 PEIGDAFGGRDHTT 63 (94) T ss_dssp HHHHHHTTSCCHHH T ss_pred HHHHHHHCCCCCHH T ss_conf 99999958997019 No 10 >d1t8ha_ d.194.1.2 (A:) Hypothetical protein YlmD {Bacillus stearothermophilus [TaxId: 1422]} Probab=10.60 E-value=12 Score=13.35 Aligned_cols=36 Identities=22% Similarity=0.672 Sum_probs=25.1 Q ss_pred HHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88753750576542134638899999999989999999999 Q gi|254781169|r 359 IPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWA 399 (461) Q Consensus 359 i~~FF~gatagVfgNa~GG~rgAiig~fv~Gii~~~~~a~~ 399 (461) +|.+|..-..++.|-..-||||+. +|++......+. T Consensus 126 ~PIll~d~~~~~iaavHaGWRG~~-----~gIi~~~i~~m~ 161 (272) T d1t8ha_ 126 VPIYFVAPSAGLVGLAHAGWRGTA-----GGIAGHMVWLWQ 161 (272) T ss_dssp EEEEEEETTTTEEEEEEECHHHHH-----TTHHHHHHHHHH T ss_pred CCEEEEECCCCEEEEEECCCCHHH-----HHHHHHHHHHHH T ss_conf 401477225764788614670288-----889999998753 Done!