RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >gnl|CDD|32851 COG3037, SgaT, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 481 Score = 364 bits (936), Expect = e-101 Identities = 199/472 (42%), Positives = 277/472 (58%), Gaps = 18/472 (3%) Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60 M F F+FF + ILT+PA +LGLI ++G ILL K + +I TI+TI+GFLLL GA Sbjct: 1 MEFLYTIFNFFINNILTEPAILLGLITLIGYILLKKPASKIIKGTIKTIIGFLLLGAGAG 60 Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120 +LV K + S I G+ +DPY + + D Y +VGY VLI F NIL V+ Sbjct: 61 VLVSTLKPVGAAFSEAFGIQGAGVDPY-NEAAATIAFLDNYGWVGYAVLIMFFGNILNVL 119 Query: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180 TG++ I L G +MFQQA ++ L W + + LL LYW I+ + K Sbjct: 120 LARFTGLKYIFLTGHIMFQQAAMLAAVILFVLGFSGWLLIIIGAILLGLYWAISPAITQK 179 Query: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRS-ENINSLKLSKWLVLLNNYVIS-TA 238 PT+++T GF+IGHQQ +A W+A K+ G + E+ LKL KWL + + +++ TA Sbjct: 180 PTRKVTGGDGFAIGHQQSLAYWLAAKVGKKFGKKKKESTEDLKLPKWLSIFRDSIVAITA 239 Query: 239 IVMIFFWGIALLSLG---IDTVQTMA--GKTHWTLYILETGLLFAVGIAIIMQGVSMFVK 293 +MI F+G LLSLG ID VQ MA G+ +W +YI++ GL FA G+ II+QGV MFV Sbjct: 240 TMMILFFGAILLSLGAAGIDNVQLMASGGQANWFVYIIQQGLTFAAGVFIILQGVRMFVA 299 Query: 294 ELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSP-- 351 EL +F+GIS L+P A+ A+DC+A+Y FAPNA++ GF+ G IGQ+ + ++ F SP Sbjct: 300 ELVPAFKGISEKLVPNAVPALDCAAVYPFAPNAVLIGFLSGFIGQLIGMGILGGFSSPNT 359 Query: 352 --ILIVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAI-----QLAK 404 ILI+PGF+P FFS AT G+FAN GGWR A F+MG++EI WA+ L Sbjct: 360 GGILIIPGFVPHFFSGATAGVFANATGGWRGAVIGAFLMGILEIFFLPWALLLLLGALTG 419 Query: 405 TDSWMGMADWSLIAPLIMQGFK-LTHFFIIPIGLLSVIYMVYARRTLDDKQS 455 G ADW L P + Q K L I + ++++ M A L K+ Sbjct: 420 ASGTFGDADWGLFGPPLGQIVKFLGIAGFILLIVIALALMFLASIVLKAKED 471 >gnl|CDD|146314 pfam03611, EIIC-GAT, PTS system sugar-specific permease component. This family includes bacterial transmembrane proteins with a putative sugar-specific permease function, including and analogous to the IIC component of the PTS system. It has been suggested that this permease may form part of an L-ascorbate utilisation pathway, with proposed specificity for 3-keto-L-gulonate (formed by hydrolysis of L-ascorbate). This family includes the IIC component of the galactitol specific GAT family PTS system. Length = 406 Score = 293 bits (752), Expect = 8e-80 Identities = 128/410 (31%), Positives = 205/410 (50%), Gaps = 15/410 (3%) Query: 14 QILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKKSKAIITKI 73 IL+ PA +LGLI ++G +LL KK + + T++T +GFL L G +LV Sbjct: 3 NILSGPAVLLGLIALIGLLLLKKKFSKALKGTLKTGIGFLGLSAGIGLLVGSLGPAAKAF 62 Query: 74 SVIHHIDGSIIDPYVFMFSCITSLGDKYNF-VGYTVLIAFLLNILMVIFRHLTGIRTIVL 132 I G + D + I +L + V +++ FL+NIL+ F T I L Sbjct: 63 VEAFGISGVVPDVGWPAAAAIAALAQNFGSPVALIMILGFLVNILLARF---TKFTYIFL 119 Query: 133 NGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYKPTQEITNNAGFS 192 G + A +I A T W + + +L LY I L +++T G + Sbjct: 120 TGHIWNFWAFMIAGVLVYAG-TGNWWLIILGAVILGLYMLILPALTAPFVRKVTGLDGIA 178 Query: 193 IGHQQQVASWIAYKIAPYLGD-RSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALLS 251 IGH + ++ I G + ++ +KL K L + +++ AI+M+ IA L Sbjct: 179 IGHFSPIGYLLSGLIGKLFGGLKKKSTEDIKLPKKLGFFGDSMVAGAILMLILGLIAGLF 238 Query: 252 LGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI 311 G D V+ ++G +W +YIL G+ FA G+AI+ +GV MF+ EL +F+GIS L+PGA Sbjct: 239 AGPDFVEELSGGQNWIVYILTQGITFAAGMAILPRGVRMFLAELVPAFKGISEKLVPGAK 298 Query: 312 LAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFSNATIGIF 371 A+DC+ ++G+APNA++ GF+ IG + I +++ +I+PG +P+FF A G+F Sbjct: 299 PALDCAVVFGYAPNAVLIGFLSSFIGGLVPIFILIAL--LAVILPGNVPLFFGGAAAGVF 356 Query: 372 ANHYGGWRAASKICFVMGVIEILGSIWAIQL-------AKTDSWMGMADW 414 N GG R A F+ G+I I + L + G AD+ Sbjct: 357 GNATGGTRGAIIGSFINGIIIIFLPLLLATLLAPLGTEMAAGTTFGDADF 406 >gnl|CDD|35153 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown]. Length = 827 Score = 31.8 bits (72), Expect = 0.41 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 14/122 (11%) Query: 196 QQQVASWIAYKIAPYLGDRSENIN--SLKLSKWLVLLNNYVISTAIVM-IFFWGIALLSL 252 Q Q+ S + K+ + +I +L+LS+ L + ++ I W + + Sbjct: 375 QSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFV 434 Query: 253 G-IDTVQTMAGKTHWTLYILE---------TGLLFAVGIAIIMQGVSMFVKELTSSFRGI 302 G I + T++ + +IL+ TGLL V ++++M V F++ L S +G+ Sbjct: 435 GTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL-SYMQGL 493 Query: 303 ST 304 + Sbjct: 494 VS 495 >gnl|CDD|38992 KOG3788, KOG3788, KOG3788, Predicted divalent cation transporter [Inorganic ion transport and metabolism]. Length = 441 Score = 29.5 bits (66), Expect = 1.8 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60 +FF ++ ++ A +L L+ + G+++ I + F +L + A Sbjct: 318 ASPRWPWRAFFSPEVNSRSARVLLLLSVPGHLIFLFIIALMKGGHTTNTYEFTILYLLAA 377 Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120 ++ I ++ ++H + IDP +T+LGD +G T L+A L L + Sbjct: 378 LIQVTILLYIAQV-IVHALWKRGIDPDNSAIPYLTALGD---LLG-TGLLALLFLSLDLF 432 Query: 121 FR 122 Sbjct: 433 DI 434 >gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]. Length = 835 Score = 28.8 bits (64), Expect = 3.4 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 1/106 (0%) Query: 227 LVLLNNYVISTAIVMIFF-WGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIM 285 L L+ ++ AI ++ + WG L + + G I LL AV + +I Sbjct: 512 LRLIRLLLLLIAIPLVLYVWGSYLEDITLWAYLGTTGGVLGVESITLGALLQAVLLFLIT 571 Query: 286 QGVSMFVKELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGF 331 ++ + L G +I Y + G Sbjct: 572 YVLTRNLPGWLEVRVLQRLDLDAGTRYSITTLLGYLLIAIGGLVGL 617 >gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.. Length = 271 Score = 28.0 bits (62), Expect = 5.4 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 4/78 (5%) Query: 52 FLLLRVGADILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKY----NFVGYT 107 + + + + ++V H I IID M S + GD+ + Sbjct: 114 LFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKL 173 Query: 108 VLIAFLLNILMVIFRHLT 125 A I + + HL Sbjct: 174 RGFATEHGIHITLVSHLR 191 >gnl|CDD|39591 KOG4390, KOG4390, KOG4390, Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]. Length = 632 Score = 27.7 bits (61), Expect = 7.0 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%) Query: 275 LLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI---LAIDCSAIYGFAPNALIWGF 331 LLF++ +AII+ MF E SS ++ IP A + + YG + I G Sbjct: 327 LLFSLTMAIIIFATVMFYAEKGSSATKFTS--IPAAFWYTIVTMTTLGYGDMVPSTIAGK 384 Query: 332 IWGAIGQISTILVMLFFHSPI-LIVPGFIPMFFSN 365 I+G+I +S +LV+ P+ +IV F ++ N Sbjct: 385 IFGSICSLSGVLVIAL---PVPVIVSNFSRIYHQN 416 >gnl|CDD|147750 pfam05767, Pox_A14, Poxvirus virion envelope protein A14. This family consists of several Poxvirus virion envelope protein A14 like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression. Length = 92 Score = 27.4 bits (61), Expect = 8.0 Identities = 10/20 (50%), Positives = 16/20 (80%) Query: 378 WRAASKICFVMGVIEILGSI 397 WRA S ICF++G++ +LG + Sbjct: 44 WRALSIICFILGIVLLLGIV 63 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.330 0.142 0.442 Gapped Lambda K H 0.267 0.0686 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,704,416 Number of extensions: 325241 Number of successful extensions: 1383 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1336 Number of HSP's successfully gapped: 163 Length of query: 461 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 364 Effective length of database: 4,167,664 Effective search space: 1517029696 Effective search space used: 1517029696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 59 (26.6 bits)