RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system
enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>gnl|CDD|32851 COG3037, SgaT, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 481
Score = 364 bits (936), Expect = e-101
Identities = 199/472 (42%), Positives = 277/472 (58%), Gaps = 18/472 (3%)
Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60
M F F+FF + ILT+PA +LGLI ++G ILL K + +I TI+TI+GFLLL GA
Sbjct: 1 MEFLYTIFNFFINNILTEPAILLGLITLIGYILLKKPASKIIKGTIKTIIGFLLLGAGAG 60
Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120
+LV K + S I G+ +DPY + + D Y +VGY VLI F NIL V+
Sbjct: 61 VLVSTLKPVGAAFSEAFGIQGAGVDPY-NEAAATIAFLDNYGWVGYAVLIMFFGNILNVL 119
Query: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180
TG++ I L G +MFQQA ++ L W + + LL LYW I+ + K
Sbjct: 120 LARFTGLKYIFLTGHIMFQQAAMLAAVILFVLGFSGWLLIIIGAILLGLYWAISPAITQK 179
Query: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRS-ENINSLKLSKWLVLLNNYVIS-TA 238
PT+++T GF+IGHQQ +A W+A K+ G + E+ LKL KWL + + +++ TA
Sbjct: 180 PTRKVTGGDGFAIGHQQSLAYWLAAKVGKKFGKKKKESTEDLKLPKWLSIFRDSIVAITA 239
Query: 239 IVMIFFWGIALLSLG---IDTVQTMA--GKTHWTLYILETGLLFAVGIAIIMQGVSMFVK 293
+MI F+G LLSLG ID VQ MA G+ +W +YI++ GL FA G+ II+QGV MFV
Sbjct: 240 TMMILFFGAILLSLGAAGIDNVQLMASGGQANWFVYIIQQGLTFAAGVFIILQGVRMFVA 299
Query: 294 ELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSP-- 351
EL +F+GIS L+P A+ A+DC+A+Y FAPNA++ GF+ G IGQ+ + ++ F SP
Sbjct: 300 ELVPAFKGISEKLVPNAVPALDCAAVYPFAPNAVLIGFLSGFIGQLIGMGILGGFSSPNT 359
Query: 352 --ILIVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAI-----QLAK 404
ILI+PGF+P FFS AT G+FAN GGWR A F+MG++EI WA+ L
Sbjct: 360 GGILIIPGFVPHFFSGATAGVFANATGGWRGAVIGAFLMGILEIFFLPWALLLLLGALTG 419
Query: 405 TDSWMGMADWSLIAPLIMQGFK-LTHFFIIPIGLLSVIYMVYARRTLDDKQS 455
G ADW L P + Q K L I + ++++ M A L K+
Sbjct: 420 ASGTFGDADWGLFGPPLGQIVKFLGIAGFILLIVIALALMFLASIVLKAKED 471
>gnl|CDD|146314 pfam03611, EIIC-GAT, PTS system sugar-specific permease component.
This family includes bacterial transmembrane proteins
with a putative sugar-specific permease function,
including and analogous to the IIC component of the PTS
system. It has been suggested that this permease may
form part of an L-ascorbate utilisation pathway, with
proposed specificity for 3-keto-L-gulonate (formed by
hydrolysis of L-ascorbate). This family includes the IIC
component of the galactitol specific GAT family PTS
system.
Length = 406
Score = 293 bits (752), Expect = 8e-80
Identities = 128/410 (31%), Positives = 205/410 (50%), Gaps = 15/410 (3%)
Query: 14 QILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKKSKAIITKI 73
IL+ PA +LGLI ++G +LL KK + + T++T +GFL L G +LV
Sbjct: 3 NILSGPAVLLGLIALIGLLLLKKKFSKALKGTLKTGIGFLGLSAGIGLLVGSLGPAAKAF 62
Query: 74 SVIHHIDGSIIDPYVFMFSCITSLGDKYNF-VGYTVLIAFLLNILMVIFRHLTGIRTIVL 132
I G + D + I +L + V +++ FL+NIL+ F T I L
Sbjct: 63 VEAFGISGVVPDVGWPAAAAIAALAQNFGSPVALIMILGFLVNILLARF---TKFTYIFL 119
Query: 133 NGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYKPTQEITNNAGFS 192
G + A +I A T W + + +L LY I L +++T G +
Sbjct: 120 TGHIWNFWAFMIAGVLVYAG-TGNWWLIILGAVILGLYMLILPALTAPFVRKVTGLDGIA 178
Query: 193 IGHQQQVASWIAYKIAPYLGD-RSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALLS 251
IGH + ++ I G + ++ +KL K L + +++ AI+M+ IA L
Sbjct: 179 IGHFSPIGYLLSGLIGKLFGGLKKKSTEDIKLPKKLGFFGDSMVAGAILMLILGLIAGLF 238
Query: 252 LGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI 311
G D V+ ++G +W +YIL G+ FA G+AI+ +GV MF+ EL +F+GIS L+PGA
Sbjct: 239 AGPDFVEELSGGQNWIVYILTQGITFAAGMAILPRGVRMFLAELVPAFKGISEKLVPGAK 298
Query: 312 LAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFSNATIGIF 371
A+DC+ ++G+APNA++ GF+ IG + I +++ +I+PG +P+FF A G+F
Sbjct: 299 PALDCAVVFGYAPNAVLIGFLSSFIGGLVPIFILIAL--LAVILPGNVPLFFGGAAAGVF 356
Query: 372 ANHYGGWRAASKICFVMGVIEILGSIWAIQL-------AKTDSWMGMADW 414
N GG R A F+ G+I I + L + G AD+
Sbjct: 357 GNATGGTRGAIIGSFINGIIIIFLPLLLATLLAPLGTEMAAGTTFGDADF 406
>gnl|CDD|35153 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 31.8 bits (72), Expect = 0.41
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 196 QQQVASWIAYKIAPYLGDRSENIN--SLKLSKWLVLLNNYVISTAIVM-IFFWGIALLSL 252
Q Q+ S + K+ + +I +L+LS+ L + ++ I W + +
Sbjct: 375 QSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFV 434
Query: 253 G-IDTVQTMAGKTHWTLYILE---------TGLLFAVGIAIIMQGVSMFVKELTSSFRGI 302
G I + T++ + +IL+ TGLL V ++++M V F++ L S +G+
Sbjct: 435 GTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL-SYMQGL 493
Query: 303 ST 304
+
Sbjct: 494 VS 495
>gnl|CDD|38992 KOG3788, KOG3788, KOG3788, Predicted divalent cation transporter
[Inorganic ion transport and metabolism].
Length = 441
Score = 29.5 bits (66), Expect = 1.8
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60
+FF ++ ++ A +L L+ + G+++ I + F +L + A
Sbjct: 318 ASPRWPWRAFFSPEVNSRSARVLLLLSVPGHLIFLFIIALMKGGHTTNTYEFTILYLLAA 377
Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120
++ I ++ ++H + IDP +T+LGD +G T L+A L L +
Sbjct: 378 LIQVTILLYIAQV-IVHALWKRGIDPDNSAIPYLTALGD---LLG-TGLLALLFLSLDLF 432
Query: 121 FR 122
Sbjct: 433 DI 434
>gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 28.8 bits (64), Expect = 3.4
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 227 LVLLNNYVISTAIVMIFF-WGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIM 285
L L+ ++ AI ++ + WG L + + G I LL AV + +I
Sbjct: 512 LRLIRLLLLLIAIPLVLYVWGSYLEDITLWAYLGTTGGVLGVESITLGALLQAVLLFLIT 571
Query: 286 QGVSMFVKELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGF 331
++ + L G +I Y + G
Sbjct: 572 YVLTRNLPGWLEVRVLQRLDLDAGTRYSITTLLGYLLIAIGGLVGL 617
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 28.0 bits (62), Expect = 5.4
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 52 FLLLRVGADILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKY----NFVGYT 107
+ + + + ++V H I IID M S + GD+ +
Sbjct: 114 LFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKL 173
Query: 108 VLIAFLLNILMVIFRHLT 125
A I + + HL
Sbjct: 174 RGFATEHGIHITLVSHLR 191
>gnl|CDD|39591 KOG4390, KOG4390, KOG4390, Voltage-gated A-type K+ channel KCND
[Inorganic ion transport and metabolism].
Length = 632
Score = 27.7 bits (61), Expect = 7.0
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 275 LLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPGAI---LAIDCSAIYGFAPNALIWGF 331
LLF++ +AII+ MF E SS ++ IP A + + YG + I G
Sbjct: 327 LLFSLTMAIIIFATVMFYAEKGSSATKFTS--IPAAFWYTIVTMTTLGYGDMVPSTIAGK 384
Query: 332 IWGAIGQISTILVMLFFHSPI-LIVPGFIPMFFSN 365
I+G+I +S +LV+ P+ +IV F ++ N
Sbjct: 385 IFGSICSLSGVLVIAL---PVPVIVSNFSRIYHQN 416
>gnl|CDD|147750 pfam05767, Pox_A14, Poxvirus virion envelope protein A14. This
family consists of several Poxvirus virion envelope
protein A14 like sequences. A14 is a component of the
virion membrane and has been found to be an H1
phosphatase substrate in vivo and in vitro. A14 is
hyperphosphorylated on serine residues in the absence of
H1 expression.
Length = 92
Score = 27.4 bits (61), Expect = 8.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 378 WRAASKICFVMGVIEILGSI 397
WRA S ICF++G++ +LG +
Sbjct: 44 WRALSIICFILGIVLLLGIV 63
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.330 0.142 0.442
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,704,416
Number of extensions: 325241
Number of successful extensions: 1383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1336
Number of HSP's successfully gapped: 163
Length of query: 461
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 364
Effective length of database: 4,167,664
Effective search space: 1517029696
Effective search space used: 1517029696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.6 bits)