RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >gnl|CDD|181943 PRK09548, PRK09548, PTS system ascorbate-specific transporter subunits IICB; Provisional. Length = 602 Score = 515 bits (1329), Expect = e-147 Identities = 249/473 (52%), Positives = 346/473 (73%), Gaps = 18/473 (3%) Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60 M F F SQ++ K +LGL+ +G +LL K TT+I TI+TIVGF+L++VGA Sbjct: 1 METLYEIFLNFFSQVIGKAPLLLGLVACIGYLLLKKDTTTIIKGTIKTIVGFMLVQVGAG 60 Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120 LV K +I +S+ H + G++IDPY M + + ++GD Y +VGY VL+A LNIL+V+ Sbjct: 61 TLVAGFKPVIEALSLYHGLTGAVIDPYTSMQATLETMGDNYAWVGYAVLLALFLNILLVV 120 Query: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180 FR +TGIRTI+L G +MFQQAGLI +F+H L +W++V Y + L+ALYWGI+SN++ K Sbjct: 121 FRRITGIRTIMLTGHIMFQQAGLIAVFYHV-LGASMWETVIYGAVLMALYWGISSNIMNK 179 Query: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240 PTQ++T AGFSIGHQQQVASWIA KIAP LGD+ ++++ LKL KWL + ++ +++TAIV Sbjct: 180 PTQQVTGGAGFSIGHQQQVASWIATKIAPKLGDKEDSVDDLKLPKWLHIFHDSIVATAIV 239 Query: 241 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR 300 M F+GI LLS G+D +Q MAGKTHW +YILETGL FAV I +I+ GV MFV EL+ SF+ Sbjct: 240 MTVFFGIILLSFGLDNLQIMAGKTHWFIYILETGLKFAVAIQVIVIGVRMFVAELSESFK 299 Query: 301 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFH-------SPIL 353 GIS +IP A+LAIDC+AIY ++PNA+++GF+WGAIGQ + +++ F+ +PI+ Sbjct: 300 GISERVIPNAVLAIDCAAIYAYSPNAVVFGFMWGAIGQFLAVGILIAFNLKGIDVDAPII 359 Query: 354 IVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQL-------AKTD 406 I+PGFIPMFFSNATIG+FANH+GGW+A KICFVMG+IE+LGS W IQL + + Sbjct: 360 IIPGFIPMFFSNATIGVFANHFGGWKAVMKICFVMGIIEVLGSAWVIQLIANISQGTQFN 419 Query: 407 SWMGMADWSLIAPLIMQG--FKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNS 457 WMGMADW+L P I+QG + FF + + L+++YM++A + L K++ + Sbjct: 420 GWMGMADWALGFPPILQGLVGSKSAFFFVLL-ALALVYMIFASKQLRAKEAAA 471 >gnl|CDD|181830 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed. Length = 452 Score = 414 bits (1067), Expect = e-116 Identities = 170/462 (36%), Positives = 248/462 (53%), Gaps = 17/462 (3%) Query: 6 HCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKK 65 + F FF + ILT+PA ++GLI ++G IL K + VI T++TI+GFL+L GA ILV Sbjct: 2 NIFLFFINNILTQPAILVGLIALIGLILQKKPASDVIKGTLKTIIGFLILGAGAGILVSS 61 Query: 66 SKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFRHLT 125 K T I G + + + + G + +L+ FL+NIL T Sbjct: 62 LKPFGTMFQEAFGIQGVVPNNEAIVAAAQKKFGSATALI---MLLGFLINIL---LARFT 115 Query: 126 GIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYKPTQEI 185 + I L G MFQ A LI + A W + + LL LYW I+ + K T+++ Sbjct: 116 PFKYIFLTGHHMFQMACLIAVILSVA-GLSGWGLIIFGGLLLGLYWAISPAITQKYTRKV 174 Query: 186 TNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIVMIFFW 245 T N GF+IGH Q + W+A K+ G + ++ +KL K L L + +STAI M F+ Sbjct: 175 TGNDGFAIGHFQSLGYWLAGKVGKLFGKKEKSTEDIKLPKSLSFLRDSTVSTAITMTIFF 234 Query: 246 GIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTS 305 IA L GI+ V+ MAG ++ +YIL GL FA G+ II+QGV MF+ EL +F+GIS Sbjct: 235 LIAALFAGIEYVEEMAGGQNFIVYILMQGLTFAAGVFIILQGVRMFLAELVPAFQGISEK 294 Query: 306 LIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFSN 365 L+PGA A+DC A++ +APNA++ GF+ IG + + ++ F S ++I+PGFIP FF Sbjct: 295 LVPGAKPALDCPAVFPYAPNAVLIGFLSSFIGGLIGMGILGAFGS-VVIIPGFIPHFFCG 353 Query: 366 ATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGM-----ADWSLIAPL 420 AT G+F N GGWR A FV G++ + + + +GM DW AP Sbjct: 354 ATAGVFGNATGGWRGAIIGAFVNGLLITFLPALLLPVLGS---LGMANTTFGDWDFGAPG 410 Query: 421 IMQGFKLTHFFIIPIGLLSVI-YMVYARRTLDDKQSNSNHHE 461 I+ GF F II I ++ + +V A R L K+ Sbjct: 411 ILLGFLAKLFGIIGIIIVIALALLVLAGRALRKKEDAEKQLA 452 >gnl|CDD|183834 PRK12997, PRK12997, PTS system ascorbate-specific transporter subunit IIC; Reviewed. Length = 466 Score = 344 bits (884), Expect = 4e-95 Identities = 173/460 (37%), Positives = 258/460 (56%), Gaps = 15/460 (3%) Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60 M F +FF IL PA ++GLIV++G ILL K + VI+ TI+T VGFL+L VGA Sbjct: 1 MEFLMTVLNFFIQNILGTPAILVGLIVLIGYILLKKSFSDVITGTIKTTVGFLILNVGAG 60 Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120 LV + + S + G +IDPY + + T+LG ++ +V +LI F++NIL+ Sbjct: 61 GLVTTLRPFLAAFSKAFGLKGVVIDPYAGLAAAQTALGSEFPYVSLILLIGFIVNILLAA 120 Query: 121 FRHLTGIRTIVLNGEVMFQQAG----LIFIFFHTALNTEIWQSVAYSSCLLALYWGITSN 176 R T + I L G +M QQA L+ + N Q + +L +YW ++ Sbjct: 121 LRRFTKFKYIFLTGHIMVQQAATVLLLVLLLIPGFRNVFGVQLIIIGGIILGVYWAVSPA 180 Query: 177 LLYKPTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVIS 236 L ++IT N GF+IGHQQ W + KIA G + ++ +LKL KWL + + V++ Sbjct: 181 LAQPFMRKITGNDGFAIGHQQMFGYWFSGKIAGKFGKKEKSTENLKLPKWLSIFRDTVVA 240 Query: 237 TAIVMIFFWGIALLSLGIDTVQTMA------GKTHWTLYILETGLLFAVGIAIIMQGVSM 290 AIVM+ F+GI LL+ G D + + G +W +YI+ L F+VG+ I++QGV M Sbjct: 241 IAIVMLVFFGIILLAAGPDIMANVDLIAKGTGGQNWFMYIIIQALTFSVGVFILLQGVRM 300 Query: 291 FVKELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHS 350 FV EL +F+GIS LIPGA A+D A++ FAPNA++ GFI+G IG + + +++ F S Sbjct: 301 FVGELVPAFKGISDKLIPGAKPAVDVPAVFPFAPNAVLIGFIFGTIGGLIGMGILIVFKS 360 Query: 351 PILIVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAI---QLAKTDS 407 PI+I+PGF+P+FF AT G+F N GGWR A F+ G++ A+ LAK Sbjct: 361 PIVIIPGFVPLFFDGATAGVFGNARGGWRGAIIGSFLSGILITFLPALAVPLLGLAKYGG 420 Query: 408 WMGMADWSLIAPLIMQGFKLTHFFIIPIGLLSVIYMVYAR 447 W G DW G L + + LL++ + +A+ Sbjct: 421 WHGNTDWD--TDWPAFGLLLKYIGLGGYLLLAIPQLQFAK 458 >gnl|CDD|171824 PRK12996, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed. Length = 463 Score = 132 bits (334), Expect = 1e-31 Identities = 107/382 (28%), Positives = 181/382 (47%), Gaps = 9/382 (2%) Query: 11 FHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKKSKAII 70 F IL P+ ++GLI ++G + K + V+ TI+TI+GF++L GA +LV + Sbjct: 9 FVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTIKTILGFIVLGGGATVLVGSLNPLG 68 Query: 71 TKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFRHLTGIRTI 130 +I G I + + + G T LI + ++ T ++ I Sbjct: 69 GMFEHAFNIQGIIPNNEAIVSIALEKYG------ASTALIMAFGMVANIVVARFTRLKYI 122 Query: 131 VLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYKPTQEITNNAG 190 L G F A +I + T E V S +L L L + + IT Sbjct: 123 FLTGHHTFYMACMIGVIL-TVAGFEGVGLVFTGSLILGLVMAFFPALAQRYMRRITGTDD 181 Query: 191 FSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALL 250 + GH + ++ I G S + + L K L L + IS ++ M+ + I + Sbjct: 182 IAFGHFGTLGYVLSGWIGSLCGKGSRSTEEMNLPKNLSFLRDSSISISLTMMIIYLIMAV 241 Query: 251 SLGIDTVQ-TMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPG 309 S G + V+ T +G ++ +Y + + FA G+ II+QGV + + E+ +F G S L+P Sbjct: 242 SAGREYVEATFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPN 301 Query: 310 AILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFSNATIG 369 A A+DC +Y +APNA++ GF++ +G + + ++ +LI+PG +P FF+ AT G Sbjct: 302 ARPALDCPVVYPYAPNAVLIGFLFSFLGGLVGLFLLGQMKL-VLILPGVVPHFFTGATAG 360 Query: 370 IFANHYGGWRAASKICFVMGVI 391 +F N GG R A F G++ Sbjct: 361 VFGNATGGRRGAMIGAFANGLL 382 >gnl|CDD|178352 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase. Length = 544 Score = 31.3 bits (71), Expect = 0.54 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 197 QQVASWIAYKIAPYLGDRSENINSLKLS 224 + A+WI IA YL + +I+ +KL+ Sbjct: 407 KLAANWIMGDIAAYLKNEKVSISEIKLT 434 >gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional. Length = 466 Score = 29.6 bits (67), Expect = 1.7 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Query: 171 WGITSNLLYKPTQEITNNAGFSIGHQQQVASWI 203 W I S P + +T N + QQ+ SW+ Sbjct: 141 WVIAS-----PVERLTRNTDINFDKQQRRTSWL 168 >gnl|CDD|179577 PRK03427, PRK03427, cell division protein ZipA; Provisional. Length = 333 Score = 29.6 bits (67), Expect = 1.7 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 10/31 (32%) Query: 131 VLNGEVMFQ---QAGLIFIF-----FHTALN 153 LNGEV+ QAG F F FH L+ Sbjct: 210 ELNGEVLLNSIQQAG--FQFGDMNIFHRHLS 238 >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 637 Score = 28.8 bits (64), Expect = 3.1 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 1 MVFFAHCFSFFHSQILTKPAFMLG---LIVMLGNILLSKK 37 + CFS F SQI F+L + MLG+ L++ K Sbjct: 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDK 196 >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. Length = 317 Score = 27.7 bits (62), Expect = 6.1 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 15/57 (26%) Query: 75 VIH-----HIDGSIIDPYVFMFSCITSLGDKYNFVG-YTVLIAFLLNILMVIFRHLT 125 V+H H+D SI P F+ + N VG YT+L A F H++ Sbjct: 77 VVHFAAESHVDRSISGPAAFIET---------NVVGTYTLLEAVRKYWHEFRFHHIS 124 >gnl|CDD|163299 TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. Length = 664 Score = 27.5 bits (61), Expect = 7.0 Identities = 9/45 (20%), Positives = 13/45 (28%) Query: 78 HIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFR 122 H GS + + +L Y F IA V + Sbjct: 300 HNAGSTASAHTVHVGTLANLAAAYKFKAVVSAIAAAGKAPTVTVQ 344 >gnl|CDD|184973 PRK15011, PRK15011, sugar efflux transporter B; Provisional. Length = 393 Score = 27.5 bits (61), Expect = 7.2 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 9/81 (11%) Query: 327 LIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFS-NATIGIFANHYGGWRAASK-- 383 LI F+ G G + T + +F + P + FF+ +A IGI + + R+ + Sbjct: 21 LIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGD 80 Query: 384 ------ICFVMGVIEILGSIW 398 C ++GV+ W Sbjct: 81 RKSLIVFCCLLGVLACTLFAW 101 >gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional. Length = 1178 Score = 27.6 bits (61), Expect = 7.2 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%) Query: 90 MFSC--ITSLGDKYNFVGYTVLIAFLLNILMVIFRHLTGIRTIV----LNGEVMFQQAGL 143 +F+C +T+ ++++ V Y+V+ L I++ I RT++ L G Q+A Sbjct: 956 LFTCFTLTTAINEWSSVLYSVIYTALPTIVVGILDKDLSRRTLLKYPQLYGAGQRQEAYN 1015 Query: 144 IFIFFHTALNTEIWQSVAYSSCLLALYWGIT 174 +F+ T ++T +WQS L YW T Sbjct: 1016 SKLFWLTMIDT-LWQSAVVFFVPLFAYWAST 1045 >gnl|CDD|152329 pfam11893, DUF3413, Domain of unknown function (DUF3413). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 250 amino acids in length. This domain is found associated with pfam00884. Length = 253 Score = 27.6 bits (62), Expect = 7.9 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Query: 318 AIYGFAPNALIWGFIW-GAIGQISTILVMLFFHSPILIVPGFIPMFFSN 365 A Y F + ++W + G G++S +LF PI+++ + + +N Sbjct: 109 AQYRFHLSPVVWDLLLSGEQGELSVEWQLLFIVVPIILL---LELLLAN 154 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.330 0.142 0.442 Gapped Lambda K H 0.267 0.0753 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,467,783 Number of extensions: 498377 Number of successful extensions: 1487 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1459 Number of HSP's successfully gapped: 103 Length of query: 461 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 364 Effective length of database: 3,898,497 Effective search space: 1419052908 Effective search space used: 1419052908 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 59 (26.5 bits)