RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system
enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>gnl|CDD|181943 PRK09548, PRK09548, PTS system ascorbate-specific transporter
subunits IICB; Provisional.
Length = 602
Score = 515 bits (1329), Expect = e-147
Identities = 249/473 (52%), Positives = 346/473 (73%), Gaps = 18/473 (3%)
Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60
M F F SQ++ K +LGL+ +G +LL K TT+I TI+TIVGF+L++VGA
Sbjct: 1 METLYEIFLNFFSQVIGKAPLLLGLVACIGYLLLKKDTTTIIKGTIKTIVGFMLVQVGAG 60
Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120
LV K +I +S+ H + G++IDPY M + + ++GD Y +VGY VL+A LNIL+V+
Sbjct: 61 TLVAGFKPVIEALSLYHGLTGAVIDPYTSMQATLETMGDNYAWVGYAVLLALFLNILLVV 120
Query: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180
FR +TGIRTI+L G +MFQQAGLI +F+H L +W++V Y + L+ALYWGI+SN++ K
Sbjct: 121 FRRITGIRTIMLTGHIMFQQAGLIAVFYHV-LGASMWETVIYGAVLMALYWGISSNIMNK 179
Query: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240
PTQ++T AGFSIGHQQQVASWIA KIAP LGD+ ++++ LKL KWL + ++ +++TAIV
Sbjct: 180 PTQQVTGGAGFSIGHQQQVASWIATKIAPKLGDKEDSVDDLKLPKWLHIFHDSIVATAIV 239
Query: 241 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR 300
M F+GI LLS G+D +Q MAGKTHW +YILETGL FAV I +I+ GV MFV EL+ SF+
Sbjct: 240 MTVFFGIILLSFGLDNLQIMAGKTHWFIYILETGLKFAVAIQVIVIGVRMFVAELSESFK 299
Query: 301 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFH-------SPIL 353
GIS +IP A+LAIDC+AIY ++PNA+++GF+WGAIGQ + +++ F+ +PI+
Sbjct: 300 GISERVIPNAVLAIDCAAIYAYSPNAVVFGFMWGAIGQFLAVGILIAFNLKGIDVDAPII 359
Query: 354 IVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQL-------AKTD 406
I+PGFIPMFFSNATIG+FANH+GGW+A KICFVMG+IE+LGS W IQL + +
Sbjct: 360 IIPGFIPMFFSNATIGVFANHFGGWKAVMKICFVMGIIEVLGSAWVIQLIANISQGTQFN 419
Query: 407 SWMGMADWSLIAPLIMQG--FKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNS 457
WMGMADW+L P I+QG + FF + + L+++YM++A + L K++ +
Sbjct: 420 GWMGMADWALGFPPILQGLVGSKSAFFFVLL-ALALVYMIFASKQLRAKEAAA 471
>gnl|CDD|181830 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 452
Score = 414 bits (1067), Expect = e-116
Identities = 170/462 (36%), Positives = 248/462 (53%), Gaps = 17/462 (3%)
Query: 6 HCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKK 65
+ F FF + ILT+PA ++GLI ++G IL K + VI T++TI+GFL+L GA ILV
Sbjct: 2 NIFLFFINNILTQPAILVGLIALIGLILQKKPASDVIKGTLKTIIGFLILGAGAGILVSS 61
Query: 66 SKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFRHLT 125
K T I G + + + + G + +L+ FL+NIL T
Sbjct: 62 LKPFGTMFQEAFGIQGVVPNNEAIVAAAQKKFGSATALI---MLLGFLINIL---LARFT 115
Query: 126 GIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYKPTQEI 185
+ I L G MFQ A LI + A W + + LL LYW I+ + K T+++
Sbjct: 116 PFKYIFLTGHHMFQMACLIAVILSVA-GLSGWGLIIFGGLLLGLYWAISPAITQKYTRKV 174
Query: 186 TNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIVMIFFW 245
T N GF+IGH Q + W+A K+ G + ++ +KL K L L + +STAI M F+
Sbjct: 175 TGNDGFAIGHFQSLGYWLAGKVGKLFGKKEKSTEDIKLPKSLSFLRDSTVSTAITMTIFF 234
Query: 246 GIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTS 305
IA L GI+ V+ MAG ++ +YIL GL FA G+ II+QGV MF+ EL +F+GIS
Sbjct: 235 LIAALFAGIEYVEEMAGGQNFIVYILMQGLTFAAGVFIILQGVRMFLAELVPAFQGISEK 294
Query: 306 LIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFSN 365
L+PGA A+DC A++ +APNA++ GF+ IG + + ++ F S ++I+PGFIP FF
Sbjct: 295 LVPGAKPALDCPAVFPYAPNAVLIGFLSSFIGGLIGMGILGAFGS-VVIIPGFIPHFFCG 353
Query: 366 ATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGM-----ADWSLIAPL 420
AT G+F N GGWR A FV G++ + + + +GM DW AP
Sbjct: 354 ATAGVFGNATGGWRGAIIGAFVNGLLITFLPALLLPVLGS---LGMANTTFGDWDFGAPG 410
Query: 421 IMQGFKLTHFFIIPIGLLSVI-YMVYARRTLDDKQSNSNHHE 461
I+ GF F II I ++ + +V A R L K+
Sbjct: 411 ILLGFLAKLFGIIGIIIVIALALLVLAGRALRKKEDAEKQLA 452
>gnl|CDD|183834 PRK12997, PRK12997, PTS system ascorbate-specific transporter
subunit IIC; Reviewed.
Length = 466
Score = 344 bits (884), Expect = 4e-95
Identities = 173/460 (37%), Positives = 258/460 (56%), Gaps = 15/460 (3%)
Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60
M F +FF IL PA ++GLIV++G ILL K + VI+ TI+T VGFL+L VGA
Sbjct: 1 MEFLMTVLNFFIQNILGTPAILVGLIVLIGYILLKKSFSDVITGTIKTTVGFLILNVGAG 60
Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120
LV + + S + G +IDPY + + T+LG ++ +V +LI F++NIL+
Sbjct: 61 GLVTTLRPFLAAFSKAFGLKGVVIDPYAGLAAAQTALGSEFPYVSLILLIGFIVNILLAA 120
Query: 121 FRHLTGIRTIVLNGEVMFQQAG----LIFIFFHTALNTEIWQSVAYSSCLLALYWGITSN 176
R T + I L G +M QQA L+ + N Q + +L +YW ++
Sbjct: 121 LRRFTKFKYIFLTGHIMVQQAATVLLLVLLLIPGFRNVFGVQLIIIGGIILGVYWAVSPA 180
Query: 177 LLYKPTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVIS 236
L ++IT N GF+IGHQQ W + KIA G + ++ +LKL KWL + + V++
Sbjct: 181 LAQPFMRKITGNDGFAIGHQQMFGYWFSGKIAGKFGKKEKSTENLKLPKWLSIFRDTVVA 240
Query: 237 TAIVMIFFWGIALLSLGIDTVQTMA------GKTHWTLYILETGLLFAVGIAIIMQGVSM 290
AIVM+ F+GI LL+ G D + + G +W +YI+ L F+VG+ I++QGV M
Sbjct: 241 IAIVMLVFFGIILLAAGPDIMANVDLIAKGTGGQNWFMYIIIQALTFSVGVFILLQGVRM 300
Query: 291 FVKELTSSFRGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHS 350
FV EL +F+GIS LIPGA A+D A++ FAPNA++ GFI+G IG + + +++ F S
Sbjct: 301 FVGELVPAFKGISDKLIPGAKPAVDVPAVFPFAPNAVLIGFIFGTIGGLIGMGILIVFKS 360
Query: 351 PILIVPGFIPMFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAI---QLAKTDS 407
PI+I+PGF+P+FF AT G+F N GGWR A F+ G++ A+ LAK
Sbjct: 361 PIVIIPGFVPLFFDGATAGVFGNARGGWRGAIIGSFLSGILITFLPALAVPLLGLAKYGG 420
Query: 408 WMGMADWSLIAPLIMQGFKLTHFFIIPIGLLSVIYMVYAR 447
W G DW G L + + LL++ + +A+
Sbjct: 421 WHGNTDWD--TDWPAFGLLLKYIGLGGYLLLAIPQLQFAK 458
>gnl|CDD|171824 PRK12996, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 463
Score = 132 bits (334), Expect = 1e-31
Identities = 107/382 (28%), Positives = 181/382 (47%), Gaps = 9/382 (2%)
Query: 11 FHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGADILVKKSKAII 70
F IL P+ ++GLI ++G + K + V+ TI+TI+GF++L GA +LV +
Sbjct: 9 FVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTIKTILGFIVLGGGATVLVGSLNPLG 68
Query: 71 TKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFRHLTGIRTI 130
+I G I + + + G T LI + ++ T ++ I
Sbjct: 69 GMFEHAFNIQGIIPNNEAIVSIALEKYG------ASTALIMAFGMVANIVVARFTRLKYI 122
Query: 131 VLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYKPTQEITNNAG 190
L G F A +I + T E V S +L L L + + IT
Sbjct: 123 FLTGHHTFYMACMIGVIL-TVAGFEGVGLVFTGSLILGLVMAFFPALAQRYMRRITGTDD 181
Query: 191 FSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIVMIFFWGIALL 250
+ GH + ++ I G S + + L K L L + IS ++ M+ + I +
Sbjct: 182 IAFGHFGTLGYVLSGWIGSLCGKGSRSTEEMNLPKNLSFLRDSSISISLTMMIIYLIMAV 241
Query: 251 SLGIDTVQ-TMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFRGISTSLIPG 309
S G + V+ T +G ++ +Y + + FA G+ II+QGV + + E+ +F G S L+P
Sbjct: 242 SAGREYVEATFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPN 301
Query: 310 AILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFSNATIG 369
A A+DC +Y +APNA++ GF++ +G + + ++ +LI+PG +P FF+ AT G
Sbjct: 302 ARPALDCPVVYPYAPNAVLIGFLFSFLGGLVGLFLLGQMKL-VLILPGVVPHFFTGATAG 360
Query: 370 IFANHYGGWRAASKICFVMGVI 391
+F N GG R A F G++
Sbjct: 361 VFGNATGGRRGAMIGAFANGLL 382
>gnl|CDD|178352 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase.
Length = 544
Score = 31.3 bits (71), Expect = 0.54
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 197 QQVASWIAYKIAPYLGDRSENINSLKLS 224
+ A+WI IA YL + +I+ +KL+
Sbjct: 407 KLAANWIMGDIAAYLKNEKVSISEIKLT 434
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase
BaeS; Provisional.
Length = 466
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 171 WGITSNLLYKPTQEITNNAGFSIGHQQQVASWI 203
W I S P + +T N + QQ+ SW+
Sbjct: 141 WVIAS-----PVERLTRNTDINFDKQQRRTSWL 168
>gnl|CDD|179577 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 131 VLNGEVMFQ---QAGLIFIF-----FHTALN 153
LNGEV+ QAG F F FH L+
Sbjct: 210 ELNGEVLLNSIQQAG--FQFGDMNIFHRHLS 238
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 637
Score = 28.8 bits (64), Expect = 3.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 1 MVFFAHCFSFFHSQILTKPAFMLG---LIVMLGNILLSKK 37
+ CFS F SQI F+L + MLG+ L++ K
Sbjct: 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDK 196
>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase. This
protein is related to UDP-glucose 4-epimerase (GalE) and
likewise has an NAD cofactor.
Length = 317
Score = 27.7 bits (62), Expect = 6.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 75 VIH-----HIDGSIIDPYVFMFSCITSLGDKYNFVG-YTVLIAFLLNILMVIFRHLT 125
V+H H+D SI P F+ + N VG YT+L A F H++
Sbjct: 77 VVHFAAESHVDRSISGPAAFIET---------NVVGTYTLLEAVRKYWHEFRFHHIS 124
>gnl|CDD|163299 TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC
family. The protein SO_1778 (MtrC) of Shewanella
oneidensis MR-1, and its paralog SO_1779 (OmcA), with
which it intteracts, are large decaheme proteins, about
900 amino acids in length, involved in the use of
manganese [Mn(III/IV)] and iron [Fe(III)] as terminal
electron acceptors. This model represents these and
similar decaheme proteins, found also in Rhodoferax
ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966,
and a few other bacterial species.
Length = 664
Score = 27.5 bits (61), Expect = 7.0
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 78 HIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVIFR 122
H GS + + +L Y F IA V +
Sbjct: 300 HNAGSTASAHTVHVGTLANLAAAYKFKAVVSAIAAAGKAPTVTVQ 344
>gnl|CDD|184973 PRK15011, PRK15011, sugar efflux transporter B; Provisional.
Length = 393
Score = 27.5 bits (61), Expect = 7.2
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 327 LIWGFIWGAIGQISTILVMLFFHSPILIVPGFIPMFFS-NATIGIFANHYGGWRAASK-- 383
LI F+ G G + T + +F + P + FF+ +A IGI + + R+ +
Sbjct: 21 LIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGD 80
Query: 384 ------ICFVMGVIEILGSIW 398
C ++GV+ W
Sbjct: 81 RKSLIVFCCLLGVLACTLFAW 101
>gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 27.6 bits (61), Expect = 7.2
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 90 MFSC--ITSLGDKYNFVGYTVLIAFLLNILMVIFRHLTGIRTIV----LNGEVMFQQAGL 143
+F+C +T+ ++++ V Y+V+ L I++ I RT++ L G Q+A
Sbjct: 956 LFTCFTLTTAINEWSSVLYSVIYTALPTIVVGILDKDLSRRTLLKYPQLYGAGQRQEAYN 1015
Query: 144 IFIFFHTALNTEIWQSVAYSSCLLALYWGIT 174
+F+ T ++T +WQS L YW T
Sbjct: 1016 SKLFWLTMIDT-LWQSAVVFFVPLFAYWAST 1045
>gnl|CDD|152329 pfam11893, DUF3413, Domain of unknown function (DUF3413). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 250
amino acids in length. This domain is found associated
with pfam00884.
Length = 253
Score = 27.6 bits (62), Expect = 7.9
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 318 AIYGFAPNALIWGFIW-GAIGQISTILVMLFFHSPILIVPGFIPMFFSN 365
A Y F + ++W + G G++S +LF PI+++ + + +N
Sbjct: 109 AQYRFHLSPVVWDLLLSGEQGELSVEWQLLFIVVPIILL---LELLLAN 154
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.330 0.142 0.442
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,467,783
Number of extensions: 498377
Number of successful extensions: 1487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1459
Number of HSP's successfully gapped: 103
Length of query: 461
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,898,497
Effective search space: 1419052908
Effective search space used: 1419052908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.5 bits)