RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system
enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)



>1cs6_A Axonin-1; neural cell adhesion; 1.80A {Gallus gallus}
           (A:105-201)
          Length = 97

 Score = 27.7 bits (61), Expect = 3.1
 Identities = 5/55 (9%), Positives = 13/55 (23%)

Query: 303 STSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPG 357
              +  G  +   CS    +   +  W          +     +   +  L +  
Sbjct: 6   PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 60


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 27.4 bits (60), Expect = 4.3
 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 36/156 (23%)

Query: 245 WGIALLSLGIDTV---QTMAGKTHWTLYILE----------TGLLFAVGIAIIMQGVSMF 291
             + L +   + +   Q+  GKT      +             +  A    +  Q +   
Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ-IMDV 208

Query: 292 VKELTSSFRGISTSLIPGA---ILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVML-- 346
           V E+       +   I  +      ID   + G  P  ++   +         I V +  
Sbjct: 209 VTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGT-PGTVMD-LMKRRQLDARDIKVFVLD 266

Query: 347 ---------FFHSPILIVPGFIP-----MFFSNATI 368
                          + +   +P     + FS AT 
Sbjct: 267 EADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS-ATF 301


>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB:
           2p2d_A 2p2n_A 2ocd_A (A:1-228)
          Length = 228

 Score = 26.9 bits (59), Expect = 5.6
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 367 TIGIFANHYGGWRAASKICFVMGVIEILGSIWAI------QLAKTDS-WMGMADWSLIAP 419
           TIG+  +  G    +  +   + ++                    DS  M   DW  IA 
Sbjct: 34  TIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAE 93

Query: 420 LIMQGFKLTHFFIIPIGLLSVIYMVYA 446
            I   +     F+I  G  ++ Y   A
Sbjct: 94  DIKAHYDDYDGFVILHGTDTMAYTASA 120


>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A
           {Pyrococcus horikoshii} PDB: 1wnf_A (A:1-198)
          Length = 198

 Score = 26.8 bits (59), Expect = 6.1
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 397 IWAIQLAKTDSW-MGMADWSLIAPLIMQGFKLTHFFIIPIGLLSVIYMVY 445
           I A  L   DS  +  +DW  +A  I +        +I  G  +  Y   
Sbjct: 42  IEARDLXNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTXAYSAS 91


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,414,161
Number of extensions: 145410
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 42
Length of query: 461
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 369
Effective length of database: 1,845,989
Effective search space: 681169941
Effective search space used: 681169941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.6 bits)