RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >1cs6_A Axonin-1; neural cell adhesion; 1.80A {Gallus gallus} (A:105-201) Length = 97 Score = 27.7 bits (61), Expect = 3.1 Identities = 5/55 (9%), Positives = 13/55 (23%) Query: 303 STSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPG 357 + G + CS + + W + + + L + Sbjct: 6 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 60 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 27.4 bits (60), Expect = 4.3 Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 36/156 (23%) Query: 245 WGIALLSLGIDTV---QTMAGKTHWTLYILE----------TGLLFAVGIAIIMQGVSMF 291 + L + + + Q+ GKT + + A + Q + Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ-IMDV 208 Query: 292 VKELTSSFRGISTSLIPGA---ILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVML-- 346 V E+ + I + ID + G P ++ + I V + Sbjct: 209 VTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGT-PGTVMD-LMKRRQLDARDIKVFVLD 266 Query: 347 ---------FFHSPILIVPGFIP-----MFFSNATI 368 + + +P + FS AT Sbjct: 267 EADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS-ATF 301 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 2ocd_A (A:1-228) Length = 228 Score = 26.9 bits (59), Expect = 5.6 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%) Query: 367 TIGIFANHYGGWRAASKICFVMGVIEILGSIWAI------QLAKTDS-WMGMADWSLIAP 419 TIG+ + G + + + ++ DS M DW IA Sbjct: 34 TIGMQRSEQGYIPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAE 93 Query: 420 LIMQGFKLTHFFIIPIGLLSVIYMVYA 446 I + F+I G ++ Y A Sbjct: 94 DIKAHYDDYDGFVILHGTDTMAYTASA 120 >1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A (A:1-198) Length = 198 Score = 26.8 bits (59), Expect = 6.1 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 397 IWAIQLAKTDSW-MGMADWSLIAPLIMQGFKLTHFFIIPIGLLSVIYMVY 445 I A L DS + +DW +A I + +I G + Y Sbjct: 42 IEARDLXNVDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTXAYSAS 91 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.330 0.142 0.442 Gapped Lambda K H 0.267 0.0596 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,414,161 Number of extensions: 145410 Number of successful extensions: 390 Number of sequences better than 10.0: 1 Number of HSP's gapped: 386 Number of HSP's successfully gapped: 42 Length of query: 461 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 369 Effective length of database: 1,845,989 Effective search space: 681169941 Effective search space used: 681169941 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 56 (25.6 bits)