RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} Length = 338 Score = 29.4 bits (66), Expect = 0.71 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 300 RGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPG-- 357 +GI + I A G+ +A+ F+ G + + +L + I+ V G Sbjct: 185 KGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKA--VLKLEKTGKEIVFVEGQG 242 Query: 358 -FIPMFFSNATIGI 370 + T+G+ Sbjct: 243 ALRHPAYGQVTLGL 256 >d1pgsa2 b.121.1.1 (A:141-314) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]} Length = 174 Score = 26.8 bits (59), Expect = 4.1 Identities = 7/38 (18%), Positives = 16/38 (42%) Query: 203 IAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240 YK + + + +S +++ +N IS +V Sbjct: 135 YEYKFQSWTNNGTNGDAFYAISSFVIAKSNTPISAPVV 172 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.330 0.142 0.442 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,696,951 Number of extensions: 76964 Number of successful extensions: 235 Number of sequences better than 10.0: 1 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 26 Length of query: 461 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 373 Effective length of database: 1,199,356 Effective search space: 447359788 Effective search space used: 447359788 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 55 (25.2 bits)