RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system
enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)



>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 338

 Score = 29.4 bits (66), Expect = 0.71
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 300 RGISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPG-- 357
           +GI    +      I   A  G+  +A+   F+ G + +   +L +      I+ V G  
Sbjct: 185 KGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKA--VLKLEKTGKEIVFVEGQG 242

Query: 358 -FIPMFFSNATIGI 370
                 +   T+G+
Sbjct: 243 ALRHPAYGQVTLGL 256


>d1pgsa2 b.121.1.1 (A:141-314) Peptide:N-glycosidase F, PNGase F
           {Flavobacterium meningosepticum [TaxId: 238]}
          Length = 174

 Score = 26.8 bits (59), Expect = 4.1
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 203 IAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240
             YK   +  + +       +S +++  +N  IS  +V
Sbjct: 135 YEYKFQSWTNNGTNGDAFYAISSFVIAKSNTPISAPVV 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,696,951
Number of extensions: 76964
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 26
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.2 bits)