BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system
enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/461 (100%), Positives = 461/461 (100%)

Query: 1   MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60
           MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD
Sbjct: 1   MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60

Query: 61  ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120
           ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI
Sbjct: 61  ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120

Query: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180
           FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK
Sbjct: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180

Query: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240
           PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV
Sbjct: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240

Query: 241 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR 300
           MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR
Sbjct: 241 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR 300

Query: 301 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIP 360
           GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIP
Sbjct: 301 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIP 360

Query: 361 MFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPL 420
           MFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPL
Sbjct: 361 MFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPL 420

Query: 421 IMQGFKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNSNHHE 461
           IMQGFKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNSNHHE
Sbjct: 421 IMQGFKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNSNHHE 461


>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 27.7 bits (60), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 368 IGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPLIMQGFKL 427
           I +FAN +  +   S   F  G++      W  +     S   M  + LI PL++  F +
Sbjct: 211 ISLFANTFKFFSIISATDFFFGIV------WDPRFPALGSSNVMGQFGLI-PLLIGTFYI 263

Query: 428 ---THFFIIPIGLLSVIYMV-YARRTL 450
                 F +PIGLL  IYM  YA + L
Sbjct: 264 GFIAMLFSVPIGLLIAIYMAEYAPKKL 290


>gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 576

 Score = 24.3 bits (51), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 116 ILMVIFRHLTGIRTIVLNGEVMF 138
           I  VIF  + G  T+ LNGEV F
Sbjct: 114 IEGVIFNQVKGGMTVDLNGEVAF 136


>gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 221

 Score = 23.9 bits (50), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 198 QVASWIAYKIAPYLGDRSENINS 220
           Q+ SW  + IAP++ D + N N 
Sbjct: 113 QLNSWRCFYIAPFISDLAGNDND 135


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 23.5 bits (49), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 187 NNAGFSIGHQQQVASWIAYKIAP 209
           NN  FS  H   +   I+++IAP
Sbjct: 360 NNVSFSYNHHNCIFKGISFEIAP 382


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.142    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,894
Number of Sequences: 1233
Number of extensions: 11400
Number of successful extensions: 36
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 10
length of query: 461
length of database: 328,796
effective HSP length: 77
effective length of query: 384
effective length of database: 233,855
effective search space: 89800320
effective search space used: 89800320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 40 (20.0 bits)