BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] (461 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/461 (100%), Positives = 461/461 (100%) Query: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD Sbjct: 1 MVFFAHCFSFFHSQILTKPAFMLGLIVMLGNILLSKKITTVISSTIQTIVGFLLLRVGAD 60 Query: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI Sbjct: 61 ILVKKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGYTVLIAFLLNILMVI 120 Query: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK Sbjct: 121 FRHLTGIRTIVLNGEVMFQQAGLIFIFFHTALNTEIWQSVAYSSCLLALYWGITSNLLYK 180 Query: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV Sbjct: 181 PTQEITNNAGFSIGHQQQVASWIAYKIAPYLGDRSENINSLKLSKWLVLLNNYVISTAIV 240 Query: 241 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR 300 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR Sbjct: 241 MIFFWGIALLSLGIDTVQTMAGKTHWTLYILETGLLFAVGIAIIMQGVSMFVKELTSSFR 300 Query: 301 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIP 360 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIP Sbjct: 301 GISTSLIPGAILAIDCSAIYGFAPNALIWGFIWGAIGQISTILVMLFFHSPILIVPGFIP 360 Query: 361 MFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPL 420 MFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPL Sbjct: 361 MFFSNATIGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPL 420 Query: 421 IMQGFKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNSNHHE 461 IMQGFKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNSNHHE Sbjct: 421 IMQGFKLTHFFIIPIGLLSVIYMVYARRTLDDKQSNSNHHE 461 >gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 27.7 bits (60), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Query: 368 IGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPLIMQGFKL 427 I +FAN + + S F G++ W + S M + LI PL++ F + Sbjct: 211 ISLFANTFKFFSIISATDFFFGIV------WDPRFPALGSSNVMGQFGLI-PLLIGTFYI 263 Query: 428 ---THFFIIPIGLLSVIYMV-YARRTL 450 F +PIGLL IYM YA + L Sbjct: 264 GFIAMLFSVPIGLLIAIYMAEYAPKKL 290 >gi|254780456|ref|YP_003064869.1| 30S ribosomal protein S1 [Candidatus Liberibacter asiaticus str. psy62] Length = 576 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 116 ILMVIFRHLTGIRTIVLNGEVMF 138 I VIF + G T+ LNGEV F Sbjct: 114 IEGVIFNQVKGGMTVDLNGEVAF 136 >gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus str. psy62] Length = 221 Score = 23.9 bits (50), Expect = 6.5, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 14/23 (60%) Query: 198 QVASWIAYKIAPYLGDRSENINS 220 Q+ SW + IAP++ D + N N Sbjct: 113 QLNSWRCFYIAPFISDLAGNDND 135 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 187 NNAGFSIGHQQQVASWIAYKIAP 209 NN FS H + I+++IAP Sbjct: 360 NNVSFSYNHHNCIFKGISFEIAP 382 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.142 0.442 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,894 Number of Sequences: 1233 Number of extensions: 11400 Number of successful extensions: 36 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 10 length of query: 461 length of database: 328,796 effective HSP length: 77 effective length of query: 384 effective length of database: 233,855 effective search space: 89800320 effective search space used: 89800320 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 40 (20.0 bits)