HHsearch alignment for GI: 254781170 and conserved domain: COG0415
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1008.76 Aligned_cols=457 Identities=48% Similarity=0.806 Sum_probs=412.3
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 (483)
Q Consensus 7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~ 86 (483)
T Consensus 1 ~~~~l~WfrrDLR~~DN~aL~~A~~~~~~~~~~vfi~~~~~~~--~~~~~~~~Fl~~sL~~L~~~L~~~gi~L~v~~--- 75 (461)
T COG0415 1 TSTVLVWFRRDLRLTDNAALAAACQSGQPVIIAVFILDPEQLG--HASPRHAAFLLQSLQALQQSLAELGIPLLVRE--- 75 (461)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECHHHCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE---
T ss_conf 9707999406554677599999985378735899985500100--03799999999999999999997499459982---
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 350899999999870976142100111001100102688875-2000000223434555760023786443210147998
Q gi|254781170|r 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 (483)
Q Consensus 87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~ 165 (483)
T Consensus 76 -~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~~~d~~l~~p~~~~t~~~~~y~vfT~F~k~~ 154 (461)
T COG0415 76 -GDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHSFWDALLHEPGEVRTGSGEPYKVFTPFYKAW 154 (461)
T ss_pred -CCHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHH
T ss_conf -8879999999998185068850010563888999999888763954788545201577661379999765266699988
Q ss_pred HHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 86315663221245544567-766755575323476--434554688876433322111111101101202686545666
Q gi|254781170|r 166 IQNLVQADLRSLPVPAIRLT-GPVTPSNIPRFFDYP--FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 (483)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~t 242 (483)
T Consensus 155 ~~~~~~--~~~~~~p~~~~~~~~~~~--~~~~~~~P~~~~~~~~~~~~Ge~aA~~~l~~F~~~~l~~Y~~~Rd~p~~~~T 230 (461)
T COG0415 155 RDRLRI--LRPVPAPDVLDALRDEEP--PPEEISLPDFSKFDVLLFTGGEKAALARLQDFLAEGLDDYERTRDFPALDGT 230 (461)
T ss_pred HHHCCC--CCCCCCCCHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 875135--788899512103343446--7520018862224455789358999999999999888788874577564665
Q ss_pred CCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHH
Q ss_conf 54461111464879999999999864311123477200102320246888788863357888615301101200010467
Q gi|254781170|r 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322 (483)
Q Consensus 243 SrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~ 322 (483)
T Consensus 231 S~LSpyL~~G~IS~r~v~~~~~~~~~~----~~~~~~~~~~eL~WREFy~h~~~~~p~~~~~~~~~~~~~~~~w~~~~~~ 306 (461)
T COG0415 231 SRLSPYLAFGVISPREVYAALLAAESD----AREGTAALINELIWREFYQHLLYHYPSLSRFEPFAEKTLNIPWEDNPAH 306 (461)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 666889982886899999999976503----6401899999999999999999838853235641102457861269999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCC
Q ss_conf 89987227888688999999997167635899999999998410470022334776641331114745610020127898
Q gi|254781170|r 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402 (483)
Q Consensus 323 ~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~ 402 (483)
T Consensus 307 f~aW~~G~TGyPIVDA~MRqL~~TG~MHNR~RMivAsFL~k~L~IdWR~GE~~F~~~LiD~D~asN~ggWQW~AstG~Da 386 (461)
T COG0415 307 FQAWQEGKTGYPIVDAAMRQLNQTGYMHNRMRMIVASFLTKDLLIDWREGEKYFMRQLIDGDPASNNGGWQWAASTGTDA 386 (461)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 99986589899533389999998678412789999999998238877778999998544777556777735773168888
Q ss_pred CCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4702204645898872489978330082432799778049554013125789999763189999999999999996
Q gi|254781170|r 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 (483)
Q Consensus 403 ~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~ 478 (483)
T Consensus 387 ~pyfRiFNp~~Q~~kfDp~g~fIr~wvPeL~~~~~~~ih~p~~~~~-~~~~~~YP~piVd~~~~r~~a~~~y~~~~ 461 (461)
T COG0415 387 APYFRIFNPVTQAEKFDPDGEFIRRWVPELRNLPDKYIHEPWELSE-VVLGVDYPKPIVDHKESREQALAAYEAAK 461 (461)
T ss_pred CCCEECCCHHHHHHHCCCCCCCHHHHCHHHHCCCHHHCCCHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8630003878887652888532886488864798553148654433-11257898210154788999999987229