HHsearch alignment for GI: 254781170 and conserved domain: COG3046
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only].
Probab=99.92 E-value=9e-24 Score=170.87 Aligned_cols=402 Identities=18% Similarity=0.260 Sum_probs=256.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 26888358675567789999999579829999973837847888998999999999999999999759809999657535
Q gi|254781170|r 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 (483)
Q Consensus 9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g 88 (483)
T Consensus 3 ~~~~lvLgdQL~~~~~al~~--d~~--~~~vllvE~~~~a~~~r~HkqKl~lv~aAMR~Fad~LraeG~~V~Y~~~~~-~ 77 (505)
T COG3046 3 SSVVLVLGDQLSEDHSALGD--DRS--QDGVLLVESAAEARYRRHHKQKLVLVFAAMRHFADELRAEGLKVRYERADD-N 77 (505)
T ss_pred CEEEEEECCCCCCCCCHHCC--CCC--CCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC-C
T ss_conf 13899745523555531104--766--673898615767666300612447789999999999862775269997377-6
Q ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHH-HHCCCCEECC-CCCCCCCCCCCCCCC-CCCCCCHHHHHHH
Q ss_conf 089999999987097614210011100110010268887-5200000022-343455576002378-6443210147998
Q gi|254781170|r 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFD-DSVLLPPGSILNHAL-QMYKVYTPFRKAL 165 (483)
Q Consensus 89 ~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l-~~~~~~~~~~-~~~l~~p~~i~~~~~-~~~~vftpf~k~~ 165 (483)
T Consensus 78 ~~~~~l~~~l~~~~~d~~~~~~---p~~~~l~~~m~~L~~~~g~~i~~~~~~~Fl~s~a~f~~w~~~~k~~lme~FYr~m 154 (505)
T COG3046 78 SFGGELRRALEAYPGDRVQVQE---PGDHRLEARMKSLSMALGIEITEVENPHFLCSRAEFDAWAGDRKPLLMESFYRRM 154 (505)
T ss_pred CCCHHHHHHHHHCCCCEEEEEC---CCCHHHHHHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 4426999999716877579966---7631289999866654382257753755312787766661668541059999998
Q ss_pred HHHC---CCCC-------------CCCCCCCCCCCCCCC--CCC--------CCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 8631---5663-------------221245544567766--755--------5753234764-34554688876433322
Q gi|254781170|r 166 IQNL---VQAD-------------LRSLPVPAIRLTGPV--TPS--------NIPRFFDYPF-QAIDPMFPIGEQNALHI 218 (483)
Q Consensus 166 ~~~~---~~~~-------------~~~~p~~~~~~~~~~--~~~--------~~~~~~~~~~-~~~~~~~~gGe~~A~~~ 218 (483)
T Consensus 155 Rkr~g~LM~~dqP~GGrWnFDaeNR~~~~-pdL~~P~pl~fppd~~vq~v~e~Ve~~f~~~~G~~e~F~wpvtr~~A~~~ 233 (505)
T COG3046 155 RKRTGILMEDDQPEGGRWNFDAENRKKLP-PDLLPPKPLKFPPDEIVQEVKERVERLFPDNFGQVEGFGWPVTRTQALRA 233 (505)
T ss_pred HHHHCEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 88615211379777886776732356799-76789998878996036999999996479998762337897788999999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCC----CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCC-CHHHHHHH
Q ss_conf 1111111011012026865456----665446111146487999999999986431112347720010232-02468887
Q gi|254781170|r 219 LRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRH 293 (483)
Q Consensus 219 L~~Fl~~~l~~Y~~~Rn~p~~~----~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL-~WRef~~~ 293 (483)
T Consensus 234 L~~Fi~~~L~nFG~yQDam~~d~~~L~HSllS~alNigLL~PleVi~Aa~~Ay~~-g~ipLN~VEGFvRQiiGWREfmRg 312 (505)
T COG3046 234 LKHFIADRLPNFGSYQDAMSADDPHLWHSLLSFALNIGLLTPLEVIRAALKAYRE-GDIPLNSVEGFVRQIIGWREFMRG 312 (505)
T ss_pred HHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998631577477787468851578777787632479889999999973235-888668888999998509999877
Q ss_pred HHHHH-HHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 88863-35788861530110120001046789987227888688999999997167635899999999998410470022
Q gi|254781170|r 294 LMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 (483)
Q Consensus 294 ~~~~~-P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g 372 (483)
T Consensus 313 iY~~~~P~y~t-rN~f~~d~~Lp-----~~y--w-~g~T~M~cl~~av~~v~d~gYAHHIqRLMV~gNfALl~G~dPd~v 383 (505)
T COG3046 313 IYWLKMPDYAT-RNFFNADRKLP-----PFY--W-TGQTKMACLAIAVGRVLDHGYAHHIQRLMVTGNFALLLGVDPDAV 383 (505)
T ss_pred HHHHCCCCHHH-HHHHCCCCCCC-----CCC--C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 65324885443-12213689999-----744--5-687674289999999861027999999999734788747878999
Q ss_pred HHHHHHHHHC-CCHH---CCCCCCCEEEECCCC-CCCCC------CCCCHHHHHHHHCCCCCEEHCCCH
Q ss_conf 3347766413-3111---474561002012789-84702------204645898872489978330082
Q gi|254781170|r 373 EEYFMSQLLD-GDLA---SNNGGWQWAASTGND-SVPYF------RIFNPTIQGKRFDPQGTFIRHWLP 430 (483)
Q Consensus 373 ~~~f~~~llD-~d~~---~n~~~wq~~a~~G~d-~~~~~------Ri~np~~q~~~~Dp~g~~ir~wvP 430 (483)
T Consensus 384 ~~Wf~~~fiDAYdWV~~PNv~GM~qFADG-G~iatKPYasS~nYInkMSDyC~~C~yd~k~r~Gd~aCp 451 (505)
T COG3046 384 DRWFMEVFIDAYDWVELPNVRGMSQFADG-GLIATKPYASSGNYINKMSDYCSDCAYDPKSRLGDDACP 451 (505)
T ss_pred HHHHHHHHHHHHHHEECCCCCCHHHCCCC-CEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf 99999987127662134563212220368-555247654311688877676541356803125765576