>TIGR00591 phr2 deoxyribodipyrimidine photolyase; InterPro: IPR008148 Deoxyribodipyrimidine photolyase (DNA photolyase) is a DNA repair enzyme. It binds to UV-damaged DNA containing pyrimidine dimers and, upon absorbing a near-UV photon (300 to 500 nm), breaks the cyclobutane ring joining the two pyrimidines of the dimer. DNA photolyase is an enzyme that requires two choromophore-cofactors for its activity: a reduced FADH2 and either 5,10-methenyltetrahydrofolate (5,10-MTFH) or an oxidized 8-hydroxy-5- deazaflavin (8-HDF) derivative (F420). The folate or deazaflavin chromophore appears to function as an antenna, while the FADH2 chromophore is thought to be responsible for electron transfer. On the basis of sequence similarities DNA photolyases can be grouped into two classes. The second class contains enzymes from Myxococcus xanthus, methanogenic archaebacteria, insects, fish and marsupial mammals. It is not yet known what second cofactor is bound to class 2 enzymes. There are a number of conserved sequence regions in all known class 2 DNA photolyases, especially in the C-terminal part. ; GO: 0003904 deoxyribodipyrimidine photo-lyase activity, 0006281 DNA repair.

Probab=100.00 E-value=0 Score=374.64 Aligned_cols=397 Identities=21% Similarity=0.259 Sum_probs=285.5 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHC---CCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 42688835867556778999999957---982999997383784788899899999999999999999975980999965 Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84 (483) Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~---~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~ 84 (483) T Consensus 23 g~vvYWM~rd~Rv~DNWAL~yA~~LA~~~~~PL~VvFcL~p~fl---~A~~RhY~Fml~GL~~v~~~c~~l~Ipf~Ll~- 98 (471) T TIGR00591 23 GYVVYWMSRDQRVQDNWALIYAQRLALKLKLPLHVVFCLVPKFL---NATIRHYKFMLKGLREVAKECRALGIPFHLLL- 98 (471) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC- T ss_conf 75488740376322579999999999740798699830777876---66517899999999999999986489879757- Q ss_pred CCCC-CHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCH---H Q ss_conf 7535-08999999998709761421001110011001026888752000000223434555760023786443210---1 Q gi|254781170|r 85 SNFD-DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT---P 160 (483) Q Consensus 85 ~~~g-~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vft---p 160 (483) T Consensus 99 ---gr~~~~~lP~f~~~~~~~a~VtDf~PL~~~~~w~~~v~k~Lp~~vPl~qVDAhnvVP~w~AS~K--~EY~ArTiR~K 173 (471) T TIGR00591 99 ---GRSAKEVLPKFVQERDAGAVVTDFSPLRIIRQWVEEVAKALPKDVPLVQVDAHNVVPMWVASDK--LEYSARTIRGK 173 (471) T ss_pred ---CCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEECHHHCCCH--HHHHHHHHHHH T ss_conf ---8986665588885417752653630223107789998504732166256547540031001660--23333545678 Q ss_pred HHHHHHHHCC-CCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCCCCCC----CCCC Q ss_conf 4799886315-6632212455--------44567766755575323476-4345546-88876433322111----1111 Q gi|254781170|r 161 FRKALIQNLV-QADLRSLPVP--------AIRLTGPVTPSNIPRFFDYP-FQAIDPM-FPIGEQNALHILRK----FCKE 225 (483) Q Consensus 161 f~k~~~~~~~-~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~gGe~~A~~~L~~----Fl~~ 225 (483) T Consensus 174 I~~~L~~fL~r~~P~~~~~~~~~Grkle~~~~~~~~vdw~~~~~~l~~dG~~V~E~~~a~pG~~agl~~L~~nkdGF~~~ 253 (471) T TIGR00591 174 IKKLLPEFLTREFPLVAVHPAAAGRKLEPSLKTAKAVDWEEALASLQVDGREVAEVQWAKPGTKAGLEMLQSNKDGFISQ 253 (471) T ss_pred HHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH T ss_conf 88741442023577556786553553573213367767789999716898838860000684389999987201331666 Q ss_pred CCCHHHHCCCCCCC-CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCC-HHHHHHHHHHHH--HHH Q ss_conf 01101202686545-66654461111464879999999999864311123477200102320-246888788863--357 Q gi|254781170|r 226 KVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY--PSV 301 (483) Q Consensus 226 ~l~~Y~~~Rn~p~~-~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~-WRef~~~~~~~~--P~~ 301 (483) T Consensus 254 RL~~f~~~RNdP~~p~aLS~LSP~lHfGq~Saqr~al~a~r~----R~~~~~sv~~FlEEL~VRREL~dNFCfY~PG~~Y 329 (471) T TIGR00591 254 RLELFETDRNDPNKPDALSNLSPWLHFGQLSAQRAALEARRA----RGNSSASVDAFLEELIVRRELADNFCFYNPGPSY 329 (471) T ss_pred HHHCCCCCCCCCCCHHHHHCCCCHHHHCCCCHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 640014678887502565247612340443588999999973----0678335776556566544420562240788874 Q ss_pred HHHHHC---------CHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 888615---------30110120001046789987227888688999999997167635899999999998410470022 Q gi|254781170|r 302 CMGKPF---------IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372 (483) Q Consensus 302 ~~~~~~---------~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g 372 (483) T Consensus 330 ds~~gl~~WA~~TL~~H~kD~Re~~YSleqLE---~a~T~D~LWNAAQ~elV~~GKmHGfLRMY----WaKK-ILEWT~~ 401 (471) T TIGR00591 330 DSLKGLYEWAQKTLMDHAKDKREHLYSLEQLE---KAKTHDPLWNAAQLELVEEGKMHGFLRMY----WAKK-ILEWTAS 401 (471) T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH---CCCCCCHHHHHHHHHHHHCCCCCCCHHHH----HHCE-ECCCCCC T ss_conf 43356627899998754216877301289730---64676610569999998707603213665----5021-0026887 Q ss_pred ---HHHHHHHH-----HCC-CHHCCCCCCCEEEECCCCCCCC--------CCCCCHHHHHHHHCCCCCEEHCC Q ss_conf ---33477664-----133-1114745610020127898470--------22046458988724899783300 Q gi|254781170|r 373 ---EEYFMSQL-----LDG-DLASNNGGWQWAASTGNDSVPY--------FRIFNPTIQGKRFDPQGTFIRHW 428 (483) Q Consensus 373 ---~~~f~~~l-----lD~-d~~~n~~~wq~~a~~G~d~~~~--------~Ri~np~~q~~~~Dp~g~~ir~w 428 (483) T Consensus 402 PeeAL~~aiyLNDrY~~DGrDPn-GyvGcMWsi-CG~HD~gW~ER~iFGKvRyMNy~GckRKF~-v~~y~~r~ 471 (471) T TIGR00591 402 PEEALSIAIYLNDRYELDGRDPN-GYVGCMWSI-CGIHDQGWAEREIFGKVRYMNYAGCKRKFN-VAEYVRRY 471 (471) T ss_pred HHHHHHHHHHHCCCCEECCCCCC-CCEEEEEEE-CCCCCCCCCCCCCCCCCCCCCHHHHHHHCC-HHHHHHCC T ss_conf 68999999985453022674887-601312222-673587644530146413564022332125-25663139

HHsearch alignment for GI: 254781170 and conserved domain: TIGR00591