HHsearch alignment for GI: 254781170 and conserved domain: TIGR02765
>TIGR02765 crypto_DASH cryptochrome, DASH family; InterPro: IPR014133 Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This entry describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes..
Probab=100.00 E-value=0 Score=842.89 Aligned_cols=420 Identities=29% Similarity=0.509 Sum_probs=357.4
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCC----CCEEEEEEECHHHHCC----------------C------CCCHHHHHHH
Q ss_conf 426888358675567789999999579----8299999738378478----------------8------8998999999
Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNSD----AKVIAVFIATPEQWRQ----------------H------GISARQSHFI 61 (483)
Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~----~~vlpvyi~dp~~~~~----------------~------~~~~~~~~Fl 61 (483)
T Consensus 1 k~vl~wfRnDLRl~DN~~l~~A~~~~~~~~~~~l~p~YCfd~~~~~l~GfvPkGsenPhPaPk~~~~~~~~~G~~R~~FL 80 (529)
T TIGR02765 1 KVVLYWFRNDLRLHDNELLHKASSKADKSSFSELVPLYCFDPRQFKLSGFVPKGSENPHPAPKTHFGGFPKTGPFRAKFL 80 (529)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 96899971422203027999997314331750589885047655554111237777788886555576000115666789
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCC-----CCCEEEEC-CCCCHHHHCCHHHHHHHHH-CCC--
Q ss_conf 99999999999975980999965753508999999998709-----76142100-1110011001026888752-000--
Q gi|254781170|r 62 YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-----VTKLFYNR-QYEINEVRRDKLLEKRLQH-RVI-- 132 (483)
Q Consensus 62 ~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~-----i~~v~~n~-~~~~~~~~rd~~i~~~l~~-~~~-- 132 (483)
T Consensus 81 ~esv~DL~~~L~~~G~~LlVr~----G~p~~vl~~L~~~~~~keCqv~~v~~~~t~~gSeE~~~~~~l~~~~~~~~~~S~ 156 (529)
T TIGR02765 81 LESVADLRTSLRKLGSDLLVRA----GKPEDVLPELIKELEAKECQVRAVFLHQTEVGSEEKSVERKLQQALAKLGIHSA 156 (529)
T ss_pred HHHHHHHHHHHHHHCHHHCCCC----CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9999999999987150220048----887899999998631133301234422631203689999999987432377520
Q ss_pred -CEECCCCC--CCCCCCCCCC----CCCCCCCCHHHHHHHHH-HCCCCCCCCC-------CCCCCCCCCCCCCCC-CC--
Q ss_conf -00022343--4555760023----78644321014799886-3156632212-------455445677667555-75--
Q gi|254781170|r 133 -CKSFDDSV--LLPPGSILNH----ALQMYKVYTPFRKALIQ-NLVQADLRSL-------PVPAIRLTGPVTPSN-IP-- 194 (483)
Q Consensus 133 -~~~~~~~~--l~~p~~i~~~----~~~~~~vftpf~k~~~~-~~~~~~~~~~-------p~~~~~~~~~~~~~~-~~-- 194 (483)
T Consensus 157 ~~~~~w~~tkyL~h~~dLPF~~tsGl~dLPdvFTqFRK~VE~l~~~~~~~~~~P~~~~Lp~~P~~dmi~~~~~g~~~PGf 236 (529)
T TIGR02765 157 KVEQFWGSTKYLYHEDDLPFDHTSGLEDLPDVFTQFRKQVEALKISIRPPLPAPEKGELPPLPKIDMISVEDPGWQIPGF 236 (529)
T ss_pred EEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35654587101103355783011243446522130101001000011366788856677778743311367788888873
Q ss_pred CCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCC-CC-CCHHHHCCC-CCCCCCCCCCCHHHCCCC
Q ss_conf 32347643455------------------4688876433322111111-10-110120268-654566654461111464
Q gi|254781170|r 195 RFFDYPFQAID------------------PMFPIGEQNALHILRKFCK-EK-VYYYVEQRD-IPAIQGTSQLSPYLSIGV 253 (483)
Q Consensus 195 ~~~~~~~~~~~------------------~~~~gGe~~A~~~L~~Fl~-~~-l~~Y~~~Rn-~p~~~~tSrLSPyL~~G~ 253 (483)
T Consensus 237 ~~~~L~~~~~~~~~~~~~~~~~~~~~~S~~~F~GGE~~aL~r~~~Yf~~~~~~~~YKeTRNGllG~DySTKFSPWLAlGC 316 (529)
T TIGR02765 237 TLEDLGEEESEIVKFLKDLIDFPEDERSVLDFKGGETSALARLKEYFWSKDLLKSYKETRNGLLGPDYSTKFSPWLALGC 316 (529)
T ss_pred CHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 13530565147899976303662001332026675357889999874146665342111000146541146789987246
Q ss_pred CCHHHHHHHHHHHHH----------HHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHH--
Q ss_conf 879999999999864----------31112347720010232024688878886335788861530110120001046--
Q gi|254781170|r 254 LSPRQCWNRLKEEFV----------DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-- 321 (483)
Q Consensus 254 IS~R~v~~~~~~~~~----------~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~-- 321 (483)
T Consensus 317 vSpR~I~~~l~~YE~GtGtkykGadGf~~~~N~STYWv~FELLWRdYF~f~A~KyG~rLF~~~G~~-g~~~~w~~d~~ky 395 (529)
T TIGR02765 317 VSPRQIYEELQRYETGTGTKYKGADGFERGANDSTYWVIFELLWRDYFRFYALKYGNRLFRFSGLR-GKHPKWSFDAKKY 395 (529)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC-CCCCCCCHHHHHH
T ss_conf 688899999997522377421046664441365203457788889999999998386012046767-7888750046550
Q ss_pred -----------------------HHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf -----------------------789987227888688999999997167635899999999998410470022334776
Q gi|254781170|r 322 -----------------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378 (483)
Q Consensus 322 -----------------------~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~ 378 (483)
T Consensus 396 GWrtantsialPGqePtPekvse~F~~Wk~G~TGyPlvdAnMreL~~TGfMSNRGRQ~VASfLv~~LGlDWRyGAewFE~ 475 (529)
T TIGR02765 396 GWRTANTSIALPGQEPTPEKVSERFEAWKTGTTGYPLVDANMRELAATGFMSNRGRQNVASFLVKDLGLDWRYGAEWFET 475 (529)
T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 44100221445888887468999999860787578730222785621267334057899999987357654221788851
Q ss_pred HHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHH
Q ss_conf 641331114745610020127898470220464589887248997833008243
Q gi|254781170|r 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432 (483)
Q Consensus 379 ~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL 432 (483)
T Consensus 476 ~L~DYDV~SNWGNW~Y~AGVGnDPRga~R~FN~~KQa~~YDp~Geyv~~W~~~l 529 (529)
T TIGR02765 476 QLVDYDVSSNWGNWQYLAGVGNDPRGANRQFNLEKQAQDYDPDGEYVKTWVPEL 529 (529)
T ss_pred HHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCC
T ss_conf 211036552425655105788875534666573543025687863786406779