HHsearch alignment for GI: 254781170 and conserved domain: pfam00875
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=100.00 E-value=2.3e-40 Score=276.41 Aligned_cols=156 Identities=38% Similarity=0.631 Sum_probs=147.9
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 (483)
Q Consensus 10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~ 89 (483)
T Consensus 1 vl~WfR~DLRl~DN~aL~~A~~~~~-~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~----g~ 75 (164)
T pfam00875 1 VLVWFRRDLRLHDNPALAAAAASGA-PVIPVFILDPAQLGSHKLGAARRWFLLESLADLDESLAKLGIPLIVRR----GD 75 (164)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECC----CC
T ss_conf 9899689876302899999997299-789999972677247887889999999999999999996688631058----98
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999870976142100111001100102688875-2000000223434555760023786443210147998863
Q gi|254781170|r 90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 (483)
Q Consensus 90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~ 168 (483)
T Consensus 76 ~~~~l~~l~~~~~i~~v~~n~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~p~~i~~~~g~~~~vFTpf~k~~~~~ 155 (164)
T pfam00875 76 PAEVLPELAKELGASAVYWNRDYEPYERRRDAAVKEALREAGIEVHSFDDHLLVPPGEVLTKKGEPYKVFTPFWKAWLKE 155 (164)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 58999999996799999991678989999999999999854746999789587775812179849898564899999841
Q ss_pred CC
Q ss_conf 15
Q gi|254781170|r 169 LV 170 (483)
Q Consensus 169 ~~ 170 (483)
T Consensus 156 ~~ 157 (164)
T pfam00875 156 LL 157 (164)
T ss_pred CC
T ss_conf 89