HHsearch alignment for GI: 254781170 and conserved domain: pfam03441
>pfam03441 FAD_binding_7 FAD binding domain of DNA photolyase.
Probab=100.00 E-value=0 Score=726.41 Aligned_cols=268 Identities=51% Similarity=0.921 Sum_probs=252.8
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHH
Q ss_conf 87643332211111110110120268654566654461111464879999999999864311123477200102320246
Q gi|254781170|r 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289 (483)
Q Consensus 210 gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRe 289 (483)
T Consensus 1 GGe~~A~~~L~~Fl~~~l~~Y~~~Rn~P~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~f~~eL~WRe 80 (275)
T pfam03441 1 GGEKAALKRLESFLKERLADYAKDRDDPAADGTSRLSPYLHFGEISPRQVYQAVRKAAGAPGSAASEGAEAFLSELIWRE 80 (275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 94999999999999868877534038888767764679880896869999999999873103544211999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCHHCCH---HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8887888633578886153011012000104---6789987227888688999999997167635899999999998410
Q gi|254781170|r 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366 (483)
Q Consensus 290 f~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~---~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~ 366 (483)
T Consensus 81 f~~~~~~~~p~~~~-~~~~~~~~~~~w~~~~~~~~~~~aW~~G~TG~P~vDA~mrqL~~tG~mhnr~Rm~vAsfl~k~L~ 159 (275)
T pfam03441 81 FYIQLLYHNPDLER-ENLNPAYDGLPWAKDRPDEYLLEAWEEGRTGYPLVDAAMRQLRQTGWMHNRLRMIVASFLTKKLL 159 (275)
T ss_pred HHHHHHHHCCCHHH-HCCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999985862765-32678773687556743299999987599899619999999999889668999999999998736
Q ss_pred CCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHH
Q ss_conf 47002233477664133111474561002012789847022046458988724899783300824327997780495540
Q gi|254781170|r 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446 (483)
Q Consensus 367 idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~ 446 (483)
T Consensus 160 idWr~G~~~f~~~LiD~D~a~N~~~Wqw~agtg~d~~p~~Ri~np~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~Pw~~ 239 (275)
T pfam03441 160 IDWREGEEYFAETLIDADPASNNGGWQWQAGTGTDAAPYFRIFNPVKQSDKFDPNGEYIRRWVPELAGLPDRYIHEPWKA 239 (275)
T ss_pred CCHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCC
T ss_conf 88689999999876564653477877888477888875433569988999859896559997877526998884795438
Q ss_pred HHH----CCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 131----25789999763189999999999999996
Q gi|254781170|r 447 LDK----NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478 (483)
Q Consensus 447 ~~~----~~~~~~YP~pivd~~~~~~~a~~~~~~~~ 478 (483)
T Consensus 240 ~~~~~~~~~~~~~YP~Pivd~~~~r~~~~~~~~~~~ 275 (275)
T pfam03441 240 PRPVQAGAVLGKDYPKPIVDHKEARKRALDAYKAAR 275 (275)
T ss_pred CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 878887612479997133888999999999999719