HHsearch alignment of GI: 254781170 and MMDB domain: 1u3d_A_1-259
>1u3d_A (A:1-259) Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=358.08 Aligned_cols=241 Identities=22% Similarity=0.293 Sum_probs=203.5
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 26888358675567789999999579829999973837847888998999999999999999999759809999657535
Q gi|254781170|r 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88 (483)
Q Consensus 9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g 88 (483)
++|||||||||++||+||.+|++.+ +++||||+||.+++....|++|++|+++||.+|+++|+++|++|+++.|+
T Consensus 13 ~~i~WfrrDlRl~DN~aL~~A~~~~--~~l~v~v~d~~~~~~~~~~~~~~~fl~esL~~L~~~L~~~G~~L~v~~g~--- 87 (259)
T 1u3d_A 13 CSIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRST--- 87 (259)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHHS--CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECS---
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCC--CEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC---
T ss_conf 5899979996541489999998499--98999997733325899668999999999999999999879967999688---
Q ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 08999999998709761421001110011001026888752-00000022343455576002378644321014799886
Q gi|254781170|r 89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 (483)
Q Consensus 89 ~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~ 167 (483)
.+.++|.+++++++++.|+++.+|++++++||+.|.+.|+. ++.+..++++++++|+.+.+..+.+|++||||+++|..
T Consensus 88 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~~d~~i~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~f~~f~~~~~~ 167 (259)
T 1u3d_A 88 DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLS 167 (259)
T ss_dssp CHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCHHHHHCCEEEEECCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 86999999999819988999332160454201011002330580799604643100002345678863025889999986
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCC-CCC---CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
Q ss_conf 315663221245544567766755-575---323476-434554688876433322111111101101202686545666
Q gi|254781170|r 168 NLVQADLRSLPVPAIRLTGPVTPS-NIP---RFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242 (483)
Q Consensus 168 ~~~~~~~~~~p~~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~t 242 (483)
.....++...+............. ... ...... .......|+|||.+|+++|++|+++++.+|+++||.|+.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gge~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~t 247 (259)
T 1u3d_A 168 MPYDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATT 247 (259)
T ss_dssp CSSCCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 31124666564311233443222123444332222573112455257303678876533331122201245431100000
Q ss_pred CCCCHHHCCCCC
Q ss_conf 544611114648
Q gi|254781170|r 243 SQLSPYLSIGVL 254 (483)
Q Consensus 243 SrLSPyL~~G~I 254 (483)
|+|||||+||||
T Consensus 248 S~LSpyL~~G~I 259 (259)
T 1u3d_A 248 SFLSPHLHFGEV 259 (259)
T ss_dssp CCCHHHHHTTSS
T ss_pred HCCCCCCCCCCC
T ss_conf 002200132437