HHsearch alignment of GI: 254781170 and MMDB domain: 2j07_A_222-395
>2j07_A (A:222-395) Deoxyribodipyrimidine photo-lyase; chromophore, DNA binding protein, flavoprotein, nucleotide- binding, antenna chromophore; HET: FAD HDF; 1.95A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=448.67 Aligned_cols=174 Identities=44% Similarity=0.879 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCC
Q ss_conf 79999999999864311123477200102320246888788863357888615301101200010467899872278886
Q gi|254781170|r 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334 (483)
Q Consensus 255 S~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P 334 (483)
|||+|++++.+. ++++++.|++||+||||++++++++|.... .++.+.++.++|..+++.|++|++|+||+|
T Consensus 1 S~R~v~~~~~~~-------~~~~~~~f~~~L~WRe~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p 72 (174)
T 2j07_A 1 SPRLAAWEAERR-------GGEGARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPRFQAFPWQEDEALFQAWYEGKTGVP 72 (174)
T ss_dssp CHHHHHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHCGGGGT-SCSSGGGTTCCCCCCHHHHHHHHTTCSSCH
T ss_pred CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHCCCCCCH
T ss_conf 699999999887-------655544445678899999989886678876-531100133333478788633431667853
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 88999999997167635899999999998410470022334776641331114745610020127898470220464589
Q gi|254781170|r 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414 (483)
Q Consensus 335 lVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q 414 (483)
+||||||||++|||||||+|||||||+|+.|++||++|++||+++|||||+++|++||||+||+|+|+.|++|+|||++|
T Consensus 73 ~iDAamr~L~~tG~lhn~~R~~~asfl~~~l~~~w~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~~r~~n~~~~ 152 (174)
T 2j07_A 73 LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQ 152 (174)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCCCCCCEEECHHHH
T ss_conf 99999997554357678899999876677503342458999998764876101899988874768889976303489899
Q ss_pred HHHHCCCCCEEHCCCHHHHCCC
Q ss_conf 8872489978330082432799
Q gi|254781170|r 415 GKRFDPQGTFIRHWLPELNNVP 436 (483)
Q Consensus 415 ~~~~Dp~g~~ir~wvPeL~~~p 436 (483)
+++|||+|+|||||||||++|.
T Consensus 153 ~~~~Dp~g~yir~w~PeL~~~s 174 (174)
T 2j07_A 153 GERHDPEGRWLKRWAPEYPSYA 174 (174)
T ss_dssp HHHHSTTSHHHHHHCTTCSSSS
T ss_pred HHHHCCCCCCHHHHCCCCCCCC
T ss_conf 9987989754777481123799