HHsearch alignment of GI: 254781170 and MMDB domain: 2j07_A_222-395

>2j07_A (A:222-395) Deoxyribodipyrimidine photo-lyase; chromophore, DNA binding protein, flavoprotein, nucleotide- binding, antenna chromophore; HET: FAD HDF; 1.95A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=448.67  Aligned_cols=174  Identities=44%  Similarity=0.879  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCC
Q ss_conf             79999999999864311123477200102320246888788863357888615301101200010467899872278886
Q gi|254781170|r  255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP  334 (483)
Q Consensus       255 S~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P  334 (483)
                      |||+|++++.+.       ++++++.|++||+||||++++++++|.... .++.+.++.++|..+++.|++|++|+||+|
T Consensus         1 S~R~v~~~~~~~-------~~~~~~~f~~~L~WRe~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p   72 (174)
T 2j07_A            1 SPRLAAWEAERR-------GGEGARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPRFQAFPWQEDEALFQAWYEGKTGVP   72 (174)
T ss_dssp             CHHHHHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHCGGGGT-SCSSGGGTTCCCCCCHHHHHHHHTTCSSCH
T ss_pred             CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHCCCCCCH
T ss_conf             699999999887-------655544445678899999989886678876-531100133333478788633431667853


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf             88999999997167635899999999998410470022334776641331114745610020127898470220464589
Q gi|254781170|r  335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ  414 (483)
Q Consensus       335 lVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q  414 (483)
                      +||||||||++|||||||+|||||||+|+.|++||++|++||+++|||||+++|++||||+||+|+|+.|++|+|||++|
T Consensus        73 ~iDAamr~L~~tG~lhn~~R~~~asfl~~~l~~~w~~g~~~f~~~liD~d~a~n~~~wq~~ag~~~~~~~~~r~~n~~~~  152 (174)
T 2j07_A           73 LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQ  152 (174)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCCCCCCEEECHHHH
T ss_conf             99999997554357678899999876677503342458999998764876101899988874768889976303489899


Q ss_pred             HHHHCCCCCEEHCCCHHHHCCC
Q ss_conf             8872489978330082432799
Q gi|254781170|r  415 GKRFDPQGTFIRHWLPELNNVP  436 (483)
Q Consensus       415 ~~~~Dp~g~~ir~wvPeL~~~p  436 (483)
                      +++|||+|+|||||||||++|.
T Consensus       153 ~~~~Dp~g~yir~w~PeL~~~s  174 (174)
T 2j07_A          153 GERHDPEGRWLKRWAPEYPSYA  174 (174)
T ss_dssp             HHHHSTTSHHHHHHCTTCSSSS
T ss_pred             HHHHCCCCCCHHHHCCCCCCCC
T ss_conf             9987989754777481123799