HHsearch alignment of GI: 254781170 and MMDB domain: 2j4d_A_317-525
>2j4d_A (A:317-525) Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=0 Score=495.34 Aligned_cols=203 Identities=32% Similarity=0.589 Sum_probs=193.7
Q ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 72001023202468887888633578886153011012000104678998722788868899999999716763589999
Q gi|254781170|r 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356 (483)
Q Consensus 277 ~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~ 356 (483)
|+++|++||+||||++++++++|++.. .++.+.++.++|+++++.|++|++|+||+|+||||||||++|||||||+|||
T Consensus 2 ~~e~f~~eL~wRe~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~w~~G~TG~p~vDAamr~L~~tG~lhn~~Rm~ 80 (209)
T 2j4d_A 2 STYWVLFELIWRDYFRFLSIKCGNSLF-HLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQI 80 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGT-STTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 337898999998886689871761232-0222100122212231123432311368818999999999863557799999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCC
Q ss_conf 99999984104700223347766413311147456100201278984702204645898872489978330082432799
Q gi|254781170|r 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436 (483)
Q Consensus 357 vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p 436 (483)
||||||+.|++||+.|++||+++|||||+++|+|||||+||+|+|+.+ +|+|||++|++++||+|+|||+|||||+++|
T Consensus 81 vasfl~~~l~~~w~~g~~~f~~~liD~d~a~n~~~wq~~aG~~~~~~~-~r~~~p~~q~~~~Dp~g~yi~~w~pel~~~p 159 (209)
T 2j4d_A 81 VCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLP 159 (209)
T ss_dssp HHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSSCGGG-CCCCCHHHHHHHHCTTCHHHHHHSGGGTTSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHCCCCCCHHHHCHHHHCCC
T ss_conf 999989871668778999999873686443188887898657889998-5046988999985999756687488753699
Q ss_pred HHHHCCHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 778049554013125--789999763189999999999999996400
Q gi|254781170|r 437 TQYIHAPHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 (483)
Q Consensus 437 ~~~ih~p~~~~~~~~--~~~~YP~pivd~~~~~~~a~~~~~~~~k~~ 481 (483)
.++||+||.++.... .+.+||.||||++++|++++++|+++|++.
T Consensus 160 ~~~i~~p~~~~~~~~~~~~~~yp~pivd~~~~~~~~~~~~~~~~~~~ 206 (209)
T 2j4d_A 160 KEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGGGFRGSHSGRRSRH 206 (209)
T ss_dssp TTTTTSCHHHHTCCCSSCCSCCC------------------------
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 88806976588443415767796233189999999998888887503