HHsearch alignment of GI: 254781170 and MMDB domain: 3fy4_A_323-451

>3fy4_A (A:323-451) 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00  E-value=0  Score=318.78  Aligned_cols=127  Identities=43%  Similarity=0.861  Sum_probs=121.3

Q ss_pred             HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf             10120001046789987227888688999999997167635899999999998410-47002233477664133111474
Q gi|254781170|r  311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNN  389 (483)
Q Consensus       311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~-idWr~g~~~f~~~llD~d~~~n~  389 (483)
                      ++..+|+++.+.+++|++|+||+|+||||||||++||||||++|||||||+|+.|. +||+.|++||+++|||||+++|+
T Consensus         2 t~~~~~~~~~~~~~~~~~G~Tg~p~vdaa~r~L~~tG~~h~~~R~~~a~~~~~~l~~~~w~~g~~~f~~~~iD~~~~~n~   81 (129)
T 3fy4_A            2 CKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINN   81 (129)
T ss_dssp             SCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCH
T ss_conf             23454335630012332234688289999999754154242889999999987413887666299988547586703677


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf             5610020127898470220464589887248997833008243279977
Q gi|254781170|r  390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ  438 (483)
Q Consensus       390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~  438 (483)
                      +||||+||+|.|.. ++|+|||++|+++|||+|+|||||+|||+.+|++
T Consensus        82 ~~w~~~aG~~~~~~-~~r~~n~~~~~~~~d~~g~yi~~~~pel~~~P~e  129 (129)
T 3fy4_A           82 GNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQ  129 (129)
T ss_dssp             HHHHHHTTSSSCCC-TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTT
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHH
T ss_conf             87645421478776-5542689899998599975299859664269977