HHsearch alignment of GI: 254781170 and MMDB domain: 3fy4_A_323-451
>3fy4_A (A:323-451) 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=318.78 Aligned_cols=127 Identities=43% Similarity=0.861 Sum_probs=121.3
Q ss_pred HHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCHHCCC
Q ss_conf 10120001046789987227888688999999997167635899999999998410-47002233477664133111474
Q gi|254781170|r 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNN 389 (483)
Q Consensus 311 ~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~-idWr~g~~~f~~~llD~d~~~n~ 389 (483)
++..+|+++.+.+++|++|+||+|+||||||||++||||||++|||||||+|+.|. +||+.|++||+++|||||+++|+
T Consensus 2 t~~~~~~~~~~~~~~~~~G~Tg~p~vdaa~r~L~~tG~~h~~~R~~~a~~~~~~l~~~~w~~g~~~f~~~~iD~~~~~n~ 81 (129)
T 3fy4_A 2 CKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINN 81 (129)
T ss_dssp SCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCH
T ss_conf 23454335630012332234688289999999754154242889999999987413887666299988547586703677
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHH
Q ss_conf 5610020127898470220464589887248997833008243279977
Q gi|254781170|r 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438 (483)
Q Consensus 390 ~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~ 438 (483)
+||||+||+|.|.. ++|+|||++|+++|||+|+|||||+|||+.+|++
T Consensus 82 ~~w~~~aG~~~~~~-~~r~~n~~~~~~~~d~~g~yi~~~~pel~~~P~e 129 (129)
T 3fy4_A 82 GNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQ 129 (129)
T ss_dssp HHHHHHTTSSSCCC-TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTT
T ss_pred HHHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHH
T ss_conf 87645421478776-5542689899998599975299859664269977