HHsearch results for GI: 254781170 and protein with PDBid: 1np7_A
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=0 Score=994.32 Aligned_cols=463 Identities=29% Similarity=0.493 Sum_probs=396.3
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8642688835867556778999999957982999997383784788-----89989999999999999999997598099
Q gi|254781170|r 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASLLQVQKSLSQKGIVFQ 80 (483)
Q Consensus 6 ~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~-----~~~~~~~~Fl~esL~~L~~~L~~~g~~L~ 80 (483)
.-++.||||||||||+||+||.+|+++++ +|+||||+||.++..+ ..|++|+.||++||.+|+++|+++|++|+
T Consensus 4 ~~p~~ivWfrrDLRl~DN~aL~~A~~~~~-~vl~vfi~dp~~~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~ 82 (489)
T 1np7_A 4 VPPTVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL 82 (489)
T ss_dssp CCCEEEEEESSCCCSTTCHHHHHHHHTTS-EEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99988999499854617899999995799-39999998727751447443213499999999999999999997799769
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 996575350899999999870976142100111001100102688875-2000000223434555760023786443210
Q gi|254781170|r 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 (483)
Q Consensus 81 v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vft 159 (483)
|+. |++.++|.+|+++++|+.||+|++|+++++.||+.|.+.|. .++.+..++++++++|+.+.+..+++|++||
T Consensus 83 v~~----G~~~~vl~~L~~~~~i~~v~~~~e~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~l~~p~~i~~~~~~~~~~ft 158 (489)
T 1np7_A 83 VTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFT 158 (489)
T ss_dssp EEE----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHH
T ss_pred EEE----CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECCCCCEEECCCCCCCCCCH
T ss_conf 997----8999999999998599589991664613577888999987630000012332001476511247898752102
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCC---CCCCCC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHH
Q ss_conf 147998863156632212455445677667-555753---234764-345546888764333221111--1110110120
Q gi|254781170|r 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVT-PSNIPR---FFDYPF-QAIDPMFPIGEQNALHILRKF--CKEKVYYYVE 232 (483)
Q Consensus 160 pf~k~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~gGe~~A~~~L~~F--l~~~l~~Y~~ 232 (483)
||++++.+......+...+.+......... ....+. ...... ......++|||.+|+++|.+| ..+++.+|++
T Consensus 159 ~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~A~~~l~~~~f~~~~~~~Y~~ 238 (489)
T 1np7_A 159 KFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKE 238 (489)
T ss_dssp HHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 88999986203456554552013787444422367843444433643233324676447888877877652101024766
Q ss_pred CCCCC-CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 26865-45666544611114648799999999998643111234772001023202468887888633578886153011
Q gi|254781170|r 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 (483)
Q Consensus 233 ~Rn~p-~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~ 311 (483)
.||.| +.++||+|||||+|||||||+||+++.+...+. ..+.+.++|++||+|||||+++++++|+..+. .+.+.+
T Consensus 239 ~r~~~~~~~~sSrLSPyL~~G~IS~R~v~~~~~~~~~~~--~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~-~~~~~~ 315 (489)
T 1np7_A 239 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER--VSNDSTHWLIFELLWRDFFRFVAQKYGNKLFN-RGGLLN 315 (489)
T ss_dssp HTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGS-TTTTTT
T ss_pred HHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH-HCCCCC
T ss_conf 524654347654308877058578999999999975311--22420689998899999999888738608765-302212
Q ss_pred HCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCC
Q ss_conf 01200010467899872278886889999999971676358999999999984104700223347766413311147456
Q gi|254781170|r 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 (483)
Q Consensus 312 ~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~ 391 (483)
+.++|+.|++.|++|++|+|||||||||||||++||||||||||||||||||+|+||||+|++||+++|||||||||+||
T Consensus 316 ~~~~~~~d~~~~~aW~~G~TG~PlvDA~MRqL~~tGwmhnr~Rm~vasFl~k~L~idWr~g~~~f~~~liD~d~a~n~~~ 395 (489)
T 1np7_A 316 KNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGN 395 (489)
T ss_dssp CCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCHHH
T ss_conf 34664344355664425888994279999999987881689999999999846677878899999987348654327787
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCCCCCCHHH
Q ss_conf 1002012789847022046458988724899783300824327997780495540131------2578999976318999
Q gi|254781170|r 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465 (483)
Q Consensus 392 wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~pivd~~~ 465 (483)
|||+||||+|+.| ||||||++||+||||+|+|||||||||+++|+++||+||+++.. +.+|.|||+|||||++
T Consensus 396 wq~~ag~g~d~~~-~Ri~np~~q~~~~Dp~g~fir~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~Pivd~~~ 474 (489)
T 1np7_A 396 WNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQ 474 (489)
T ss_dssp HHHHHTSSCCTTS-CCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCHHH
T ss_pred HHHHHCCCCCCCC-CEECCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 6888647889998-601388899998699976688748764179977717902299899997398568999856678799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999996
Q gi|254781170|r 466 ACHHTLNQYYAAK 478 (483)
Q Consensus 466 ~~~~a~~~~~~~~ 478 (483)
||+ |.+++++++
T Consensus 475 ~~~-~~~~~~~~~ 486 (489)
T 1np7_A 475 SVE-ARRKIEQMG 486 (489)
T ss_dssp HHH-HHHTCC---
T ss_pred HHH-HHHHHHHHC
T ss_conf 999-999999854