HHsearch results for GI: 254781170 and protein with PDBid: 1np7_A

>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00  E-value=0  Score=994.32  Aligned_cols=463  Identities=29%  Similarity=0.493  Sum_probs=396.3

Q ss_pred             CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             8642688835867556778999999957982999997383784788-----89989999999999999999997598099
Q gi|254781170|r    6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASLLQVQKSLSQKGIVFQ   80 (483)
Q Consensus         6 ~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~-----~~~~~~~~Fl~esL~~L~~~L~~~g~~L~   80 (483)
                      .-++.||||||||||+||+||.+|+++++ +|+||||+||.++..+     ..|++|+.||++||.+|+++|+++|++|+
T Consensus         4 ~~p~~ivWfrrDLRl~DN~aL~~A~~~~~-~vl~vfi~dp~~~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~   82 (489)
T 1np7_A            4 VPPTVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL   82 (489)
T ss_dssp             CCCEEEEEESSCCCSTTCHHHHHHHHTTS-EEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             99988999499854617899999995799-39999998727751447443213499999999999999999997799769


Q ss_pred             EEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             996575350899999999870976142100111001100102688875-2000000223434555760023786443210
Q gi|254781170|r   81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYT  159 (483)
Q Consensus        81 v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vft  159 (483)
                      |+.    |++.++|.+|+++++|+.||+|++|+++++.||+.|.+.|. .++.+..++++++++|+.+.+..+++|++||
T Consensus        83 v~~----G~~~~vl~~L~~~~~i~~v~~~~e~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~l~~p~~i~~~~~~~~~~ft  158 (489)
T 1np7_A           83 VTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFT  158 (489)
T ss_dssp             EEE----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHH
T ss_pred             EEE----CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECCCCCEEECCCCCCCCCCH
T ss_conf             997----8999999999998599589991664613577888999987630000012332001476511247898752102


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCC---CCCCCC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHH
Q ss_conf             147998863156632212455445677667-555753---234764-345546888764333221111--1110110120
Q gi|254781170|r  160 PFRKALIQNLVQADLRSLPVPAIRLTGPVT-PSNIPR---FFDYPF-QAIDPMFPIGEQNALHILRKF--CKEKVYYYVE  232 (483)
Q Consensus       160 pf~k~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~gGe~~A~~~L~~F--l~~~l~~Y~~  232 (483)
                      ||++++.+......+...+.+......... ....+.   ...... ......++|||.+|+++|.+|  ..+++.+|++
T Consensus       159 ~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~A~~~l~~~~f~~~~~~~Y~~  238 (489)
T 1np7_A          159 KFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKE  238 (489)
T ss_dssp             HHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             88999986203456554552013787444422367843444433643233324676447888877877652101024766


Q ss_pred             CCCCC-CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             26865-45666544611114648799999999998643111234772001023202468887888633578886153011
Q gi|254781170|r  233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT  311 (483)
Q Consensus       233 ~Rn~p-~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~  311 (483)
                      .||.| +.++||+|||||+|||||||+||+++.+...+.  ..+.+.++|++||+|||||+++++++|+..+. .+.+.+
T Consensus       239 ~r~~~~~~~~sSrLSPyL~~G~IS~R~v~~~~~~~~~~~--~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~-~~~~~~  315 (489)
T 1np7_A          239 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER--VSNDSTHWLIFELLWRDFFRFVAQKYGNKLFN-RGGLLN  315 (489)
T ss_dssp             HTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGS-TTTTTT
T ss_pred             HHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH-HCCCCC
T ss_conf             524654347654308877058578999999999975311--22420689998899999999888738608765-302212


Q ss_pred             HCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCC
Q ss_conf             01200010467899872278886889999999971676358999999999984104700223347766413311147456
Q gi|254781170|r  312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG  391 (483)
Q Consensus       312 ~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~  391 (483)
                      +.++|+.|++.|++|++|+|||||||||||||++||||||||||||||||||+|+||||+|++||+++|||||||||+||
T Consensus       316 ~~~~~~~d~~~~~aW~~G~TG~PlvDA~MRqL~~tGwmhnr~Rm~vasFl~k~L~idWr~g~~~f~~~liD~d~a~n~~~  395 (489)
T 1np7_A          316 KNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGN  395 (489)
T ss_dssp             CCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCHHH
T ss_conf             34664344355664425888994279999999987881689999999999846677878899999987348654327787


Q ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCCCCCCHHH
Q ss_conf             1002012789847022046458988724899783300824327997780495540131------2578999976318999
Q gi|254781170|r  392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK  465 (483)
Q Consensus       392 wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~pivd~~~  465 (483)
                      |||+||||+|+.| ||||||++||+||||+|+|||||||||+++|+++||+||+++..      +.+|.|||+|||||++
T Consensus       396 wq~~ag~g~d~~~-~Ri~np~~q~~~~Dp~g~fir~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~Pivd~~~  474 (489)
T 1np7_A          396 WNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQ  474 (489)
T ss_dssp             HHHHHTSSCCTTS-CCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCHHH
T ss_pred             HHHHHCCCCCCCC-CEECCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             6888647889998-601388899998699976688748764179977717902299899997398568999856678799


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999996
Q gi|254781170|r  466 ACHHTLNQYYAAK  478 (483)
Q Consensus       466 ~~~~a~~~~~~~~  478 (483)
                      ||+ |.+++++++
T Consensus       475 ~~~-~~~~~~~~~  486 (489)
T 1np7_A          475 SVE-ARRKIEQMG  486 (489)
T ss_dssp             HHH-HHHTCC---
T ss_pred             HHH-HHHHHHHHC
T ss_conf             999-999999854