HHsearch results for GI: 254781170 and protein with PDBid: 2j07_A
>2j07_A Deoxyribodipyrimidine photo-lyase; chromophore, DNA binding protein, flavoprotein, nucleotide- binding, antenna chromophore; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=0 Score=927.05 Aligned_cols=420 Identities=33% Similarity=0.563 Sum_probs=371.3
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 (483)
Q Consensus 7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~ 86 (483)
|.-.||||||||||+||+||.+|++. ++|+||||+||.+++ .+++|++|++|||.+|+++|+++|++|+++.
T Consensus 1 ~gpvlvWfRrDLRl~DN~aL~~A~~~--~~vl~vfi~dp~~~~---~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~--- 72 (420)
T 2j07_A 1 MGPLLVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLK---TTPRRRAWFLENVRALREAYRARGGALWVLE--- 72 (420)
T ss_dssp -CCEEEEESSCCCSTTCHHHHHHHTT--SCEEEEEEECHHHHS---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE---
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE---
T ss_conf 99889998998425057999999837--998999998774323---4999999999999999999996899879999---
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 35089999999987097614210011100110010268887520000002234345557600237864432101479988
Q gi|254781170|r 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 (483)
Q Consensus 87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~ 166 (483)
|++.++|.+++++++|+.||++++|++++..||..|++.+. +..+.+.+++.+.+..+++|++||||++.+.
T Consensus 73 -G~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 144 (420)
T 2j07_A 73 -GLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALP-------VPLHLLPAPHLLPPDLPRAYRVYTPFSRLYR 144 (420)
T ss_dssp -SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCS-------SCEEEECCCCSSCTTCSSCCSSHHHHHTTCC
T ss_pred -ECHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCCC-------CCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -68699999999973742332112213211567776642245-------6836862144443337884324407888877
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 63156632212455445677667555753234764345546888764333221111111011012026865456665446
Q gi|254781170|r 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 (483)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 246 (483)
....+ .|.|... ........++.. ......++|||++|+++|++|+++++.+|.++||.|+.++||+||
T Consensus 145 ~~~~~-----~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 213 (420)
T 2j07_A 145 GAAPP-----LPPPEAL-PKGPEEGEIPRE-----DPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213 (420)
T ss_dssp CCCCC-----CCCCSSC-CCCCCCCCCCCC-----CCSSCCCCCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCCH
T ss_pred HCCCC-----CCCCCCC-CCCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCC
T ss_conf 50378-----8872003-456411247633-----345777998879999999999985002110105677644554404
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHH
Q ss_conf 11114648799999999998643111234772001023202468887888633578886153011012000104678998
Q gi|254781170|r 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 (483)
Q Consensus 247 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW 326 (483)
|||||||||||+|++++.+. .+++.++|++||+|||||+++++++|.+.. .++.+.++.++|..|++.|++|
T Consensus 214 PyL~fG~IS~R~v~~~~~~~-------~~~~~~~~~~eL~WRef~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~W 285 (420)
T 2j07_A 214 PYFALGVLSPRLAAWEAERR-------GGEGARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPRFQAFPWQEDEALFQAW 285 (420)
T ss_dssp HHHHTTSSCHHHHHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHCGGGGT-SCSSGGGTTCCCCCCHHHHHHH
T ss_pred HHHHCEECCHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHCCHHHH-HCCCHHHHCCCCCCCHHHHHHH
T ss_conf 46630421599999999986-------053003456788999999999884818887-5035243014422558999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 72278886889999999971676358999999999984104700223347766413311147456100201278984702
Q gi|254781170|r 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 (483)
Q Consensus 327 ~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~ 406 (483)
++|+|||||||||||||++|||||||||||||||||++|+||||+||.||+++|||||||||+|||||+||||+|++|||
T Consensus 286 ~~G~TG~P~vDA~MrqL~~tG~mhnr~Rm~~asfl~~~L~~~Wr~g~~~f~~~llD~d~~~n~~~wq~~ag~G~~~~~~~ 365 (420)
T 2j07_A 286 YEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYF 365 (420)
T ss_dssp HTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTT
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 83777751699999997650897739999999999986399879999999986637870028898887537688998764
Q ss_pred CCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20464589887248997833008243279977804955401312578999976318999999999999999640
Q gi|254781170|r 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 (483)
Q Consensus 407 Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~ 480 (483)
|||||++||++|||+|+|||||||||+++| ||.|||||+++|++|+++|++++|.
T Consensus 366 R~~np~~q~~~~Dp~g~fIr~wvPEL~~~~-------------------~~~pivd~~~~r~~~~~~~~~~~~~ 420 (420)
T 2j07_A 366 RVFNPVLQGERHDPEGRWLKRWAPEYPSYA-------------------PKDPVVDLEEARRRYLRLARDLARG 420 (420)
T ss_dssp CCCCHHHHHHHHSTTSHHHHHHCTTCSSSS-------------------CSSCSSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHCCCCCCHHHHCHHHCCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 112898999986989763887481211799-------------------8999437899999999999973278