HHsearch results for GI: 254781170 and protein with PDBid: 3fy4_A

>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00  E-value=0  Score=1009.96  Aligned_cols=463  Identities=29%  Similarity=0.455  Sum_probs=400.2

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC---------CCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             268883586755677899999995798299999738378478---------88998999999999999999999759809
Q gi|254781170|r    9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGISARQSHFIYASLLQVQKSLSQKGIVF   79 (483)
Q Consensus         9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~---------~~~~~~~~~Fl~esL~~L~~~L~~~g~~L   79 (483)
                      .+||||||||||+||+||.+|++.++ +|+||||+||.++..         +..|++|++|+++||.+|+++|+++|++|
T Consensus         6 ~sLVWfRrDLRl~DN~AL~~A~~~~~-~vlpvfi~dp~~~~~~~~~~~~~~~~~~~rr~~Fl~esL~~L~~~L~~~g~~L   84 (537)
T 3fy4_A            6 GSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRL   84 (537)
T ss_dssp             EEEEEESSCCCSTTCHHHHHHHTTCS-CEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCC-EEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             88899789964607999999980799-09999998657854363113445654359999999999999999999879947


Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             9996575350899999999870976142100111001100102688875-2000000223434555760023-7864432
Q gi|254781170|r   80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKV  157 (483)
Q Consensus        80 ~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~-~~~~~~v  157 (483)
                      +|+.    |++.++|.+++++++|+.|++|++|++++..||..|.+.|+ .++.+..+.+++|++|..+.+. .+.+|++
T Consensus        85 ~v~~----G~~~~~l~~L~~~~~i~~V~~~~~~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~~~  160 (537)
T 3fy4_A           85 LVFK----GEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLS  160 (537)
T ss_dssp             EEEE----SCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSS
T ss_pred             EEEE----CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9997----898999999999759998999620363688899999998874385501022221356310234677655423


Q ss_pred             CHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf             101479988631566322124---554456776675557532347643----455468887643332211111110--11
Q gi|254781170|r  158 YTPFRKALIQNLVQADLRSLP---VPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEK--VY  228 (483)
Q Consensus       158 ftpf~k~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gGe~~A~~~L~~Fl~~~--l~  228 (483)
                      ||+|+|.+............+   .+............++.+.+++..    .....++|||++|+++|++|+.++  +.
T Consensus       161 ft~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~  240 (537)
T 3fy4_A          161 YQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVA  240 (537)
T ss_dssp             HHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHH
T ss_pred             CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             34287764022234432456732247532112123445688766488754333468876538999999999998642344


Q ss_pred             HHHHCCCCCCC---CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             01202686545---666544611114648799999999998643111234772001023202468887888633578886
Q gi|254781170|r  229 YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK  305 (483)
Q Consensus       229 ~Y~~~Rn~p~~---~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~  305 (483)
                      +|.+.||.|+.   ++||+|||||+|||||||+||+++.+...+. ...+.+.++|++||+|||||+|+++++|.+.. .
T Consensus       241 ~Y~~~r~~p~~~~~~~tSrLSPyL~~G~IS~R~v~~~l~~~~~~~-~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~-~  318 (537)
T 3fy4_A          241 NFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDV-KKHTSPPVSLLGQLLWREFFYTTAFGTPNFDK-M  318 (537)
T ss_dssp             TCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTT-SCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTS-S
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH-H
T ss_conf             432113475422457765434335777478999999999975430-13434379999999999999888861842765-4


Q ss_pred             HCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCC
Q ss_conf             1530110120001046789987227888688999999997167635899999999998-410470022334776641331
Q gi|254781170|r  306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD  384 (483)
Q Consensus       306 ~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~-~L~idWr~g~~~f~~~llD~d  384 (483)
                      ++++.++.++|..|++.|++||+|+|||||||||||||++|||||||||||||||||| +|+||||+||+||+++|||||
T Consensus       319 ~~~~~~~~~~w~~d~~~~~~W~~G~TG~PlVDA~MRqL~~TGwmhnR~Rm~vasFl~k~~L~idWr~G~~~F~~~liD~D  398 (537)
T 3fy4_A          319 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSD  398 (537)
T ss_dssp             TTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCC
T ss_pred             CCCHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             02113202553234045666644887995689999998745883489999999999806789883889999998576866


Q ss_pred             HHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCC
Q ss_conf             11474561002012789847022046458988724899783300824327997780495540131------257899997
Q gi|254781170|r  385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL  458 (483)
Q Consensus       385 ~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~  458 (483)
                      ||||+|||||+||+|.|+ ||||||||++||++|||+|+|||||||||++||+++||+||+++..      +.+|.|||+
T Consensus       399 ~a~n~~~Wq~~ag~~~~~-~~~Rifnp~~Q~~~~Dp~g~fir~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~~~~YP~  477 (537)
T 3fy4_A          399 WAINNGNWMWLSCSSFFY-QFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPK  477 (537)
T ss_dssp             HHHHHHHHHHHTTSSSCC-CTTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCC
T ss_pred             CCCCHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf             201878775343158888-7572048989999869897659985866416997772791349989998749867899970


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             631899999999999999964
Q gi|254781170|r  459 PIVDHKKACHHTLNQYYAAKK  479 (483)
Q Consensus       459 pivd~~~~~~~a~~~~~~~~k  479 (483)
                      |||||++||++|+++++++++
T Consensus       478 PiVd~~~a~~~a~~~~~~~~~  498 (537)
T 3fy4_A          478 PMVLHDSASKECKRKMGEAYA  498 (537)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
T ss_conf             119789999999999999999