HHsearch results for GI: 254781170 and protein with PDBid: 3fy4_A
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=1009.96 Aligned_cols=463 Identities=29% Similarity=0.455 Sum_probs=400.2
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC---------CCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 268883586755677899999995798299999738378478---------88998999999999999999999759809
Q gi|254781170|r 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGISARQSHFIYASLLQVQKSLSQKGIVF 79 (483)
Q Consensus 9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~---------~~~~~~~~~Fl~esL~~L~~~L~~~g~~L 79 (483)
.+||||||||||+||+||.+|++.++ +|+||||+||.++.. +..|++|++|+++||.+|+++|+++|++|
T Consensus 6 ~sLVWfRrDLRl~DN~AL~~A~~~~~-~vlpvfi~dp~~~~~~~~~~~~~~~~~~~rr~~Fl~esL~~L~~~L~~~g~~L 84 (537)
T 3fy4_A 6 GSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRL 84 (537)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHTTCS-CEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCC-EEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 88899789964607999999980799-09999998657854363113445654359999999999999999999879947
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 9996575350899999999870976142100111001100102688875-2000000223434555760023-7864432
Q gi|254781170|r 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKV 157 (483)
Q Consensus 80 ~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~-~~~~~~v 157 (483)
+|+. |++.++|.+++++++|+.|++|++|++++..||..|.+.|+ .++.+..+.+++|++|..+.+. .+.+|++
T Consensus 85 ~v~~----G~~~~~l~~L~~~~~i~~V~~~~~~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~~~ 160 (537)
T 3fy4_A 85 LVFK----GEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLS 160 (537)
T ss_dssp EEEE----SCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSS
T ss_pred EEEE----CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9997----898999999999759998999620363688899999998874385501022221356310234677655423
Q ss_pred CHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 101479988631566322124---554456776675557532347643----455468887643332211111110--11
Q gi|254781170|r 158 YTPFRKALIQNLVQADLRSLP---VPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEK--VY 228 (483)
Q Consensus 158 ftpf~k~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gGe~~A~~~L~~Fl~~~--l~ 228 (483)
||+|+|.+............+ .+............++.+.+++.. .....++|||++|+++|++|+.++ +.
T Consensus 161 ft~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~ 240 (537)
T 3fy4_A 161 YQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVA 240 (537)
T ss_dssp HHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 34287764022234432456732247532112123445688766488754333468876538999999999998642344
Q ss_pred HHHHCCCCCCC---CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 01202686545---666544611114648799999999998643111234772001023202468887888633578886
Q gi|254781170|r 229 YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 (483)
Q Consensus 229 ~Y~~~Rn~p~~---~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~ 305 (483)
+|.+.||.|+. ++||+|||||+|||||||+||+++.+...+. ...+.+.++|++||+|||||+|+++++|.+.. .
T Consensus 241 ~Y~~~r~~p~~~~~~~tSrLSPyL~~G~IS~R~v~~~l~~~~~~~-~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~-~ 318 (537)
T 3fy4_A 241 NFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDV-KKHTSPPVSLLGQLLWREFFYTTAFGTPNFDK-M 318 (537)
T ss_dssp TCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTT-SCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTS-S
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH-H
T ss_conf 432113475422457765434335777478999999999975430-13434379999999999999888861842765-4
Q ss_pred HCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCC
Q ss_conf 1530110120001046789987227888688999999997167635899999999998-410470022334776641331
Q gi|254781170|r 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 (483)
Q Consensus 306 ~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~-~L~idWr~g~~~f~~~llD~d 384 (483)
++++.++.++|..|++.|++||+|+|||||||||||||++|||||||||||||||||| +|+||||+||+||+++|||||
T Consensus 319 ~~~~~~~~~~w~~d~~~~~~W~~G~TG~PlVDA~MRqL~~TGwmhnR~Rm~vasFl~k~~L~idWr~G~~~F~~~liD~D 398 (537)
T 3fy4_A 319 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSD 398 (537)
T ss_dssp TTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 02113202553234045666644887995689999998745883489999999999806789883889999998576866
Q ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCC
Q ss_conf 11474561002012789847022046458988724899783300824327997780495540131------257899997
Q gi|254781170|r 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 (483)
Q Consensus 385 ~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~ 458 (483)
||||+|||||+||+|.|+ ||||||||++||++|||+|+|||||||||++||+++||+||+++.. +.+|.|||+
T Consensus 399 ~a~n~~~Wq~~ag~~~~~-~~~Rifnp~~Q~~~~Dp~g~fir~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~~~~YP~ 477 (537)
T 3fy4_A 399 WAINNGNWMWLSCSSFFY-QFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPK 477 (537)
T ss_dssp HHHHHHHHHHHTTSSSCC-CTTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCC
T ss_pred CCCCHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 201878775343158888-7572048989999869897659985866416997772791349989998749867899970
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 631899999999999999964
Q gi|254781170|r 459 PIVDHKKACHHTLNQYYAAKK 479 (483)
Q Consensus 459 pivd~~~~~~~a~~~~~~~~k 479 (483)
|||||++||++|+++++++++
T Consensus 478 PiVd~~~a~~~a~~~~~~~~~ 498 (537)
T 3fy4_A 478 PMVLHDSASKECKRKMGEAYA 498 (537)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 119789999999999999999