Query gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 483
No_of_seqs 261 out of 3686
Neff 8.8
Searched_HMMs 23785
Date Wed Jun 1 01:46:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781170.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dnp_A DNA photolyase; DNA rep 100.0 0 0 1033.2 32.4 469 8-480 1-470 (471)
2 1u3d_A Cryptochrome 1 apoprote 100.0 0 0 1017.3 31.7 468 7-480 11-494 (509)
3 2wq7_A RE11660P; lyase-DNA com 100.0 0 0 1012.3 27.3 466 8-481 29-524 (543)
4 3fy4_A 6-4 photolyase; DNA rep 100.0 0 0 1010.0 28.5 463 9-479 6-498 (537)
5 1np7_A DNA photolyase; protein 100.0 0 0 994.3 32.9 463 6-478 4-486 (489)
6 1owl_A Photolyase, deoxyribodi 100.0 0 0 993.1 31.0 460 10-480 5-474 (484)
7 2j4d_A Cryptochrome 3, cryptoc 100.0 0 0 979.3 31.8 464 8-480 40-521 (525)
8 2e0i_A 432AA long hypothetical 100.0 0 0 956.1 32.8 429 9-481 2-432 (440)
9 2j07_A Deoxyribodipyrimidine p 100.0 0 0 927.1 27.8 420 7-480 1-420 (420)
10 2gvs_A Chemosensory protein CS 63.1 1.2 5E-05 22.4 -0.1 21 415-435 87-107 (109)
11 3dlo_A Universal stress protei 54.3 9.5 0.0004 16.6 10.7 83 24-110 40-125 (155)
12 2gtq_A Aminopeptidase N; alani 51.4 2.5 0.0001 20.3 -0.1 98 315-417 736-841 (867)
13 3ebh_A PFA-M1, M1 family amino 51.3 2.5 0.0001 20.4 -0.1 98 315-417 757-862 (889)
14 2d13_A Hypothetical protein PH 48.4 12 0.0005 16.0 6.1 87 24-118 19-106 (227)
15 1k19_A Chemosensory protein CS 46.5 2.8 0.00012 20.0 -0.4 19 415-433 85-103 (112)
16 3dwl_D Actin-related protein 2 41.8 6.2 0.00026 17.8 0.7 17 346-362 277-293 (317)
17 1k8k_D P34, ARP2/3 complex 34 38.2 7.6 0.00032 17.3 0.7 17 346-362 259-275 (300)
18 3odh_A Okrai endonuclease; alp 38.0 12 0.00052 15.9 1.8 10 160-169 54-63 (194)
19 3b34_A Aminopeptidase N; prote 38.0 6.7 0.00028 17.6 0.4 78 315-396 759-845 (891)
20 1mjh_A Protein (ATP-binding do 35.1 19 0.0008 14.7 9.7 88 21-110 17-128 (162)
21 2dum_A Hypothetical protein PH 25.0 28 0.0012 13.6 9.3 83 24-110 20-125 (170)
22 3bbl_A Regulatory protein of L 23.9 30 0.0012 13.5 6.1 73 60-137 22-94 (287)
No 1
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=0 Score=1033.16 Aligned_cols=469 Identities=52% Similarity=0.975 Sum_probs=423.7
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87 (483)
Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~ 87 (483)
|++||||||||||+||+||.+|++.++.+|+||||+||.+++.++.|.+|++|+++||.+|+++|+++|++|+++.++..
T Consensus 1 ~t~ivWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~r~~~Fl~esL~~L~~~L~~~g~~L~i~~g~~~ 80 (471)
T 1dnp_A 1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF 80 (471)
T ss_dssp CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 91999849994543689999999759996899999880564289978999999999999999999978997799976753
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 50899999999870976142100111001100102688875200000022343455576002378644321014799886
Q gi|254781170|r 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167 (483)
Q Consensus 88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~ 167 (483)
+.++++|.+++++++|+.|++++++++++..||..|...++ ++.++.++++++++++.+.+..++++++||||+++|.+
T Consensus 81 ~~~~~il~~l~~~~~i~~v~~~~~~~~~~~~rd~~v~~~~~-~~~~~~~~~~~l~~~~~i~~~~~~~~~~ft~f~k~~~~ 159 (471)
T 1dnp_A 81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK 159 (471)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEECCCCEEECCCEEECCCCCCCCCCCHHHHHHHH
T ss_conf 15899999999975960999705412147789999998622-83378458837843412431577663000188999988
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 3156632212455445677667555753234764-345546888764333221111111011012026865456665446
Q gi|254781170|r 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 (483)
Q Consensus 168 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 246 (483)
.+........+.|.........+..... .+.+. ......++|||++|+++|++|+++++.+|.+.||.|+.++||+||
T Consensus 160 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ge~~A~~~L~~Fl~~r~~~Y~~~r~~P~~~~tSrLS 238 (471)
T 1dnp_A 160 RLREGMPECVAAPKVRSSGSIEPSPSIT-LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 238 (471)
T ss_dssp HHHTCCCCCCCCCCCCTTCCCCCCCCCC-CCSCCCCCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 6542256666776433310147886434-367644532025884268999999999986666778752375447887658
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHH
Q ss_conf 11114648799999999998643111234772001023202468887888633578886153011012000104678998
Q gi|254781170|r 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 (483)
Q Consensus 247 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW 326 (483)
|||+|||||||+|++++.+..... ..+.+...|++||+|||||+++++++|..+...++.+.++.++|+.|++.|++|
T Consensus 239 PyL~~G~IS~R~v~~~~~~~~~~~--~~~~~~~~~~~eL~WRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 316 (471)
T 1dnp_A 239 ASLATGGLSPRQCLHRLLAEQPQA--LDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAW 316 (471)
T ss_dssp HHHHHTSSCHHHHHHHHHHHCGGG--GGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHCCCCCCHHHHHHH
T ss_conf 788708677999999999971012--221107888888888999999999785154421220343320124685888876
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 72278886889999999971676358999999999984104700223347766413311147456100201278984702
Q gi|254781170|r 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 (483)
Q Consensus 327 ~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~ 406 (483)
++|+||||+||||||||++|||||||||||||||||++|+||||+|++||+++|||||||||+|||||+||||+|++|||
T Consensus 317 ~~G~TG~PlvDA~MrqL~~tG~mhnr~Rm~~asfl~~~L~i~Wr~g~~~f~~~llD~d~~~n~~~wq~~ag~g~~~~~~~ 396 (471)
T 1dnp_A 317 QEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYF 396 (471)
T ss_dssp HHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTT
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 42898972899999997866788859999999999856898868889999988147880007589999847588899865
Q ss_pred CCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20464589887248997833008243279977804955401312578999976318999999999999999640
Q gi|254781170|r 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 (483)
Q Consensus 407 Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~ 480 (483)
|||||++||++|||+|+|||||||||+++|+++||+||+++..+.++.|||+|||||+++|++|+++|+++||+
T Consensus 397 R~~np~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~pw~~~~~~~~~~~Yp~Pivd~~~~~~~~~~~~~~~rk~ 470 (471)
T 1dnp_A 397 RIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARKG 470 (471)
T ss_dssp CCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHHHHTTTCCCSSCCCSSCHHHHHHHHHHHHHHHTCC
T ss_pred EEECHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 01089899998698976488859663179977837931161430867899866688999999999999998566
No 2
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=0 Score=1017.26 Aligned_cols=468 Identities=28% Similarity=0.469 Sum_probs=409.8
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 (483)
Q Consensus 7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~ 86 (483)
+.++||||||||||+||+||.+|++. ++|+|||||||.+++.++.|.+|.+|+++||.+|+++|+++|++|+++.+
T Consensus 11 ~~~sivWFRrDLRl~DN~aL~~A~~~--~~vl~lyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~g-- 86 (509)
T 1u3d_A 11 GGCSIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRS-- 86 (509)
T ss_dssp --CEEEEESSCCCSTTCHHHHHHHHH--SCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC--
T ss_conf 99589982899664149999999849--99899999772332589966899999999999999999987996799968--
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 350899999999870976142100111001100102688875-2000000223434555760023786443210147998
Q gi|254781170|r 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165 (483)
Q Consensus 87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~ 165 (483)
++++++|.+++++++|+.|++|++|++++..||+.|...|+ .++.+.+++++++++|+.+.+..+.+|++||||++++
T Consensus 87 -~d~~~~l~~l~~~~~i~~V~~~~~~~~~~~~rd~~v~~~~~~~~I~~~~~~~~~l~~~~~~~~~~~~~~~~f~~f~~~~ 165 (509)
T 1u3d_A 87 -TDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERC 165 (509)
T ss_dssp -SCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf -8879999999998199889992453702787888764236650923785114323573000245688630357899999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC--CCCCC--CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 863156632212455445677667--55575--323476-4345546888764333221111111011012026865456
Q gi|254781170|r 166 IQNLVQADLRSLPVPAIRLTGPVT--PSNIP--RFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 (483)
Q Consensus 166 ~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~--~~~~~~-~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~ 240 (483)
.......++...+.+......... ...+. .....+ .......|+|||++|+++|++|+++++.+|.+.|+.|+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~Y~~~r~~p~~~ 245 (509)
T 1u3d_A 166 LSMPYDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSA 245 (509)
T ss_dssp HTCSSCCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86311246665643112444543233476443322224742014540685468999999887766666530245675334
Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHH----CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH
Q ss_conf 665446111146487999999999986431----1123477200102320246888788863357888615301101200
Q gi|254781170|r 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316 (483)
Q Consensus 241 ~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~----~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w 316 (483)
+||+|||||+|||||||+||++++...... ....+.+.++|++||+|||||+++++++|... ..++.+.++.++|
T Consensus 246 ~tSrLSPyLa~G~IS~R~v~~~v~~~~~~~~~~~~~~~~~~~~~f~~eL~wRef~~~~~~~~p~~~-~~~~~~~~~~~~~ 324 (509)
T 1u3d_A 246 TTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSH-ERPLLGHLKFFPW 324 (509)
T ss_dssp TSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTT-TSCSCCTTTTCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCHHHHCCCCC
T ss_conf 543356322557676999999999987765420010007899999999999999999987293444-2420123213664
Q ss_pred HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEE
Q ss_conf 01046789987227888688999999997167635899999999998410470022334776641331114745610020
Q gi|254781170|r 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396 (483)
Q Consensus 317 ~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a 396 (483)
..|++.|++|++|+|||||||||||||++||||||||||||||||||+||||||+||+||+++|||||||+|+|||||+|
T Consensus 325 ~~d~~~~~aW~~G~TG~P~vDA~MRqL~~tGwmhnr~R~~vasfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a 404 (509)
T 1u3d_A 325 AVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 404 (509)
T ss_dssp CCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 45869999998637798189999999998789887999999999999851208999999999723877576889998740
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 12789847022046458988724899783300824327997780495540131------257899997631899999999
Q gi|254781170|r 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHT 470 (483)
Q Consensus 397 ~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~pivd~~~~~~~a 470 (483)
|||+|++||+|||||++||++|||+|+|||||||||++||+++||+||+++.. +.+|.|||.|||||++||++|
T Consensus 405 g~g~d~~~~~Ri~np~~q~~~~Dp~g~fIr~wvPeL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~Pivd~~~~~~~~ 484 (509)
T 1u3d_A 405 GTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARL 484 (509)
T ss_dssp TCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78988777541069889999869897609885914114997773691119989999839867899970228789999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999640
Q gi|254781170|r 471 LNQYYAAKKQ 480 (483)
Q Consensus 471 ~~~~~~~~k~ 480 (483)
+++++++++.
T Consensus 485 ~~~~~~~~~~ 494 (509)
T 1u3d_A 485 HEALSQMWQL 494 (509)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999988
No 3
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=0 Score=1012.31 Aligned_cols=466 Identities=28% Similarity=0.441 Sum_probs=403.1
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCC-----CCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 426888358675567789999999579-----829999973837847888998999999999999999999759809999
Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNSD-----AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82 (483)
Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~-----~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~ 82 (483)
++.||||||||||+||+||.+|++.++ .+|+||||+||.+++.+..|.+|++||++||.+|+++|+++|++|+|+
T Consensus 29 ~~vi~WFRrDLRl~DN~AL~~A~~~a~~~~~~~~V~pvfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~lg~~L~v~ 108 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVV 108 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 87898889995363549999999860201589729999998915435799789999999999999999999779977999
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCC-CCCCCCCCCHH
Q ss_conf 6575350899999999870976142100111001100102688875-200000022343455576002-37864432101
Q gi|254781170|r 83 QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILN-HALQMYKVYTP 160 (483)
Q Consensus 83 ~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~-~~~~~~~vftp 160 (483)
. |++.++|.+|+++++|+.||+|++|++++++||+.|++.|+ .++.+.++++++|++|+.+.+ ..+.++.+|++
T Consensus 109 ~----G~~~~~l~~L~~~~~i~~V~~n~~~~~~~~~rD~~v~~~l~~~~i~~~~~~~~~l~~p~~~~~k~~~~~~~~~~~ 184 (543)
T 2wq7_A 109 R----GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQK 184 (543)
T ss_dssp E----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHH
T ss_pred E----CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 7----899999999999769988999433578999999999887765310211236666568542233357888633317
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 479988631566322124554456776---------67555753234---76434554688876433322111111101-
Q gi|254781170|r 161 FRKALIQNLVQADLRSLPVPAIRLTGP---------VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKV- 227 (483)
Q Consensus 161 f~k~~~~~~~~~~~~~~p~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l- 227 (483)
|++.+.+...+.++ ..|.+......+ ......+.+.+ .+.......|+|||++|+++|++|+++++
T Consensus 185 ~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~gGE~~A~~~L~~Fl~~~l~ 263 (543)
T 2wq7_A 185 FLGIVEQLKVPKVL-GVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIW 263 (543)
T ss_dssp HHHHHTTSCCCCCC-CCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGGGCCCCCSCCSHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 77788761366565-76400023567750123210110014887887443801105434787469999999999987543
Q ss_pred -CHHHHCCCCCC--CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -10120268654--566654461111464879999999999864311123477200102320246888788863357888
Q gi|254781170|r 228 -YYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304 (483)
Q Consensus 228 -~~Y~~~Rn~p~--~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~ 304 (483)
.+|.++||.|+ .++||+|||||+|||||||+|++++.+.... ......+.++|++||+|||||+++++++|++..
T Consensus 264 ~~~y~~~r~~p~~~~~~TSrLSPyL~~G~IS~R~v~~~~~~~~~~-~~~~~~~~~~~~~eL~WRef~~~~~~~~P~~~~- 341 (543)
T 2wq7_A 264 VARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKR-QPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDR- 341 (543)
T ss_dssp HHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHH-CSSCCCTTTSHHHHHHHHHHHHHHHHTCTTTTS-
T ss_pred HHHHHHHHCCCCCHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH-
T ss_conf 335777513743011034631863446876299999999997640-343220068887899999999989986881143-
Q ss_pred HHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCC
Q ss_conf 61530110120001046789987227888688999999997167635899999999998-41047002233477664133
Q gi|254781170|r 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDG 383 (483)
Q Consensus 305 ~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~-~L~idWr~g~~~f~~~llD~ 383 (483)
.++.+.++.++|++|++.|++|++|+|||||||||||||++|||||||||||||||||| +|+||||+||+||+++||||
T Consensus 342 ~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDAaMRqL~~TGwmHnr~Rm~vasfL~k~~L~idWr~G~~~F~~~liD~ 421 (543)
T 2wq7_A 342 MLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQ 421 (543)
T ss_dssp STTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHCTTC
T ss_pred HCCCHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 12420111244223346788331799898269999999998778047999999999999740868358999999866586
Q ss_pred CHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCC
Q ss_conf 111474561002012789847022046458988724899783300824327997780495540131------25789999
Q gi|254781170|r 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457 (483)
Q Consensus 384 d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP 457 (483)
|||||+|||||+||||+|+ ||||||||++||+||||+|+|||+|||||++||+++||+||+++.. +.+|.|||
T Consensus 422 D~a~n~~~Wqw~ag~g~~~-~~~RifNP~~q~~~~Dp~g~fir~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP 500 (543)
T 2wq7_A 422 DWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGTDYP 500 (543)
T ss_dssp CHHHHHHHHHHHTTSSSCC-CTTCCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHHHHTSGGGSCHHHHHHTTCCBTTTBC
T ss_pred CCCCCHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 7103889999985478899-867344888999987889755887487743699777189121999999983985689898
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 763189999999999999996400
Q gi|254781170|r 458 LPIVDHKKACHHTLNQYYAAKKQS 481 (483)
Q Consensus 458 ~pivd~~~~~~~a~~~~~~~~k~~ 481 (483)
.|||||+++|++|+++|+++||.+
T Consensus 501 ~Pivd~~~~~~~a~~~~~~~~~~~ 524 (543)
T 2wq7_A 501 HRIVKHEVVHKENIKRMGAAYKVN 524 (543)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 244879999999999999999862
No 4
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=1009.96 Aligned_cols=463 Identities=29% Similarity=0.455 Sum_probs=400.2
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC---------CCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 268883586755677899999995798299999738378478---------88998999999999999999999759809
Q gi|254781170|r 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGISARQSHFIYASLLQVQKSLSQKGIVF 79 (483)
Q Consensus 9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~---------~~~~~~~~~Fl~esL~~L~~~L~~~g~~L 79 (483)
.+||||||||||+||+||.+|++.++ +|+||||+||.++.. +..|++|++|+++||.+|+++|+++|++|
T Consensus 6 ~sLVWfRrDLRl~DN~AL~~A~~~~~-~vlpvfi~dp~~~~~~~~~~~~~~~~~~~rr~~Fl~esL~~L~~~L~~~g~~L 84 (537)
T 3fy4_A 6 GSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRL 84 (537)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHTTCS-CEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCC-EEEEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 88899789964607999999980799-09999998657854363113445654359999999999999999999879947
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 9996575350899999999870976142100111001100102688875-2000000223434555760023-7864432
Q gi|254781170|r 80 QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKV 157 (483)
Q Consensus 80 ~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~-~~~~~~v 157 (483)
+|+. |++.++|.+++++++|+.|++|++|++++..||..|.+.|+ .++.+..+.+++|++|..+.+. .+.+|++
T Consensus 85 ~v~~----G~~~~~l~~L~~~~~i~~V~~~~~~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~~~ 160 (537)
T 3fy4_A 85 LVFK----GEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLS 160 (537)
T ss_dssp EEEE----SCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSS
T ss_pred EEEE----CCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9997----898999999999759998999620363688899999998874385501022221356310234677655423
Q ss_pred CHHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 101479988631566322124---554456776675557532347643----455468887643332211111110--11
Q gi|254781170|r 158 YTPFRKALIQNLVQADLRSLP---VPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEK--VY 228 (483)
Q Consensus 158 ftpf~k~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gGe~~A~~~L~~Fl~~~--l~ 228 (483)
||+|+|.+............+ .+............++.+.+++.. .....++|||++|+++|++|+.++ +.
T Consensus 161 ft~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~gGe~~A~~~L~~fl~~~~~l~ 240 (537)
T 3fy4_A 161 YQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVA 240 (537)
T ss_dssp HHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 34287764022234432456732247532112123445688766488754333468876538999999999998642344
Q ss_pred HHHHCCCCCCC---CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 01202686545---666544611114648799999999998643111234772001023202468887888633578886
Q gi|254781170|r 229 YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305 (483)
Q Consensus 229 ~Y~~~Rn~p~~---~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~ 305 (483)
+|.+.||.|+. ++||+|||||+|||||||+||+++.+...+. ...+.+.++|++||+|||||+|+++++|.+.. .
T Consensus 241 ~Y~~~r~~p~~~~~~~tSrLSPyL~~G~IS~R~v~~~l~~~~~~~-~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~-~ 318 (537)
T 3fy4_A 241 NFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDV-KKHTSPPVSLLGQLLWREFFYTTAFGTPNFDK-M 318 (537)
T ss_dssp TCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTT-SCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTS-S
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH-H
T ss_conf 432113475422457765434335777478999999999975430-13434379999999999999888861842765-4
Q ss_pred HCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHCCC
Q ss_conf 1530110120001046789987227888688999999997167635899999999998-410470022334776641331
Q gi|254781170|r 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384 (483)
Q Consensus 306 ~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~-~L~idWr~g~~~f~~~llD~d 384 (483)
++++.++.++|..|++.|++||+|+|||||||||||||++|||||||||||||||||| +|+||||+||+||+++|||||
T Consensus 319 ~~~~~~~~~~w~~d~~~~~~W~~G~TG~PlVDA~MRqL~~TGwmhnR~Rm~vasFl~k~~L~idWr~G~~~F~~~liD~D 398 (537)
T 3fy4_A 319 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSD 398 (537)
T ss_dssp TTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 02113202553234045666644887995689999998745883489999999999806789883889999998576866
Q ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCC
Q ss_conf 11474561002012789847022046458988724899783300824327997780495540131------257899997
Q gi|254781170|r 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458 (483)
Q Consensus 385 ~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~ 458 (483)
||||+|||||+||+|.|+ ||||||||++||++|||+|+|||||||||++||+++||+||+++.. +.+|.|||+
T Consensus 399 ~a~n~~~Wq~~ag~~~~~-~~~Rifnp~~Q~~~~Dp~g~fir~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~~~~YP~ 477 (537)
T 3fy4_A 399 WAINNGNWMWLSCSSFFY-QFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPK 477 (537)
T ss_dssp HHHHHHHHHHHTTSSSCC-CTTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHTCCBTTTBCC
T ss_pred CCCCHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 201878775343158888-7572048989999869897659985866416997772791349989998749867899970
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 631899999999999999964
Q gi|254781170|r 459 PIVDHKKACHHTLNQYYAAKK 479 (483)
Q Consensus 459 pivd~~~~~~~a~~~~~~~~k 479 (483)
|||||++||++|+++++++++
T Consensus 478 PiVd~~~a~~~a~~~~~~~~~ 498 (537)
T 3fy4_A 478 PMVLHDSASKECKRKMGEAYA 498 (537)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 119789999999999999999
No 5
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=0 Score=994.32 Aligned_cols=463 Identities=29% Similarity=0.493 Sum_probs=396.3
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8642688835867556778999999957982999997383784788-----89989999999999999999997598099
Q gi|254781170|r 6 AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASLLQVQKSLSQKGIVFQ 80 (483)
Q Consensus 6 ~M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~-----~~~~~~~~Fl~esL~~L~~~L~~~g~~L~ 80 (483)
.-++.||||||||||+||+||.+|+++++ +|+||||+||.++..+ ..|++|+.||++||.+|+++|+++|++|+
T Consensus 4 ~~p~~ivWfrrDLRl~DN~aL~~A~~~~~-~vl~vfi~dp~~~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~ 82 (489)
T 1np7_A 4 VPPTVLVWFRNDLRLHDHEPLHRALKSGL-AITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL 82 (489)
T ss_dssp CCCEEEEEESSCCCSTTCHHHHHHHHTTS-EEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99988999499854617899999995799-39999998727751447443213499999999999999999997799769
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 996575350899999999870976142100111001100102688875-2000000223434555760023786443210
Q gi|254781170|r 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYT 159 (483)
Q Consensus 81 v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vft 159 (483)
|+. |++.++|.+|+++++|+.||+|++|+++++.||+.|.+.|. .++.+..++++++++|+.+.+..+++|++||
T Consensus 83 v~~----G~~~~vl~~L~~~~~i~~v~~~~e~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~l~~p~~i~~~~~~~~~~ft 158 (489)
T 1np7_A 83 VTT----GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFT 158 (489)
T ss_dssp EEE----SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHH
T ss_pred EEE----CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCEECCCCCEEECCCCCCCCCCH
T ss_conf 997----8999999999998599589991664613577888999987630000012332001476511247898752102
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCC---CCCCCC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCHHHH
Q ss_conf 147998863156632212455445677667-555753---234764-345546888764333221111--1110110120
Q gi|254781170|r 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVT-PSNIPR---FFDYPF-QAIDPMFPIGEQNALHILRKF--CKEKVYYYVE 232 (483)
Q Consensus 160 pf~k~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~gGe~~A~~~L~~F--l~~~l~~Y~~ 232 (483)
||++++.+......+...+.+......... ....+. ...... ......++|||.+|+++|.+| ..+++.+|++
T Consensus 159 ~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~A~~~l~~~~f~~~~~~~Y~~ 238 (489)
T 1np7_A 159 KFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGDRLKDYKE 238 (489)
T ss_dssp HHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSCCGGGHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 88999986203456554552013787444422367843444433643233324676447888877877652101024766
Q ss_pred CCCCC-CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 26865-45666544611114648799999999998643111234772001023202468887888633578886153011
Q gi|254781170|r 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 (483)
Q Consensus 233 ~Rn~p-~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~ 311 (483)
.||.| +.++||+|||||+|||||||+||+++.+...+. ..+.+.++|++||+|||||+++++++|+..+. .+.+.+
T Consensus 239 ~r~~~~~~~~sSrLSPyL~~G~IS~R~v~~~~~~~~~~~--~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~-~~~~~~ 315 (489)
T 1np7_A 239 TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER--VSNDSTHWLIFELLWRDFFRFVAQKYGNKLFN-RGGLLN 315 (489)
T ss_dssp HTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGS-TTTTTT
T ss_pred HHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH-HCCCCC
T ss_conf 524654347654308877058578999999999975311--22420689998899999999888738608765-302212
Q ss_pred HCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCC
Q ss_conf 01200010467899872278886889999999971676358999999999984104700223347766413311147456
Q gi|254781170|r 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 (483)
Q Consensus 312 ~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~ 391 (483)
+.++|+.|++.|++|++|+|||||||||||||++||||||||||||||||||+|+||||+|++||+++|||||||||+||
T Consensus 316 ~~~~~~~d~~~~~aW~~G~TG~PlvDA~MRqL~~tGwmhnr~Rm~vasFl~k~L~idWr~g~~~f~~~liD~d~a~n~~~ 395 (489)
T 1np7_A 316 KNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGN 395 (489)
T ss_dssp CCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHCHHH
T ss_conf 34664344355664425888994279999999987881689999999999846677878899999987348654327787
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHH------CCCCCCCCCCCCCHHH
Q ss_conf 1002012789847022046458988724899783300824327997780495540131------2578999976318999
Q gi|254781170|r 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465 (483)
Q Consensus 392 wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~------~~~~~~YP~pivd~~~ 465 (483)
|||+||||+|+.| ||||||++||+||||+|+|||||||||+++|+++||+||+++.. +.+|.|||+|||||++
T Consensus 396 wq~~ag~g~d~~~-~Ri~np~~q~~~~Dp~g~fir~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~Pivd~~~ 474 (489)
T 1np7_A 396 WNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQ 474 (489)
T ss_dssp HHHHHTSSCCTTS-CCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCCSSCHHH
T ss_pred HHHHHCCCCCCCC-CEECCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 6888647889998-601388899998699976688748764179977717902299899997398568999856678799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999996
Q gi|254781170|r 466 ACHHTLNQYYAAK 478 (483)
Q Consensus 466 ~~~~a~~~~~~~~ 478 (483)
||+ |.+++++++
T Consensus 475 ~~~-~~~~~~~~~ 486 (489)
T 1np7_A 475 SVE-ARRKIEQMG 486 (489)
T ss_dssp HHH-HHHTCC---
T ss_pred HHH-HHHHHHHHC
T ss_conf 999-999999854
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus pcc 6301} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=0 Score=993.12 Aligned_cols=460 Identities=35% Similarity=0.613 Sum_probs=406.5
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89 (483)
Q Consensus 10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~ 89 (483)
.||||||||||+||+||.+|++.++ +|+||||+||.+++.++.|++|++|+++||.+|+++|+++|++|+|+. |+
T Consensus 5 Vl~WfrrDLRl~DN~aL~~A~~~~~-~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~----G~ 79 (484)
T 1owl_A 5 ILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ----GD 79 (484)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHCS-CEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE----SC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE----EC
T ss_conf 8999789853525799999996799-799999987667428997999999999999999999997899679999----47
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 899999999870976142100111001100102688875-2000000223434555760023786443210147998863
Q gi|254781170|r 90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168 (483)
Q Consensus 90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~ 168 (483)
+.++|.+|+++++|+.|+++++|++++..||..+...++ .++.+..+.++++++|+.+.+..+++|++||||+|+|.+.
T Consensus 80 ~~~~l~~L~~~~~i~~v~~~~e~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~l~~p~~v~~~~~~~~~vft~f~k~~~~~ 159 (484)
T 1owl_A 80 PQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQ 159 (484)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCEEECCCCCCCCCCCHHHHHHHHC
T ss_conf 89999999998699799997115631567777777654036725431366411267622337999764221899999855
Q ss_pred CCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 15663221245544567-------76675557532347643-45546888764333221111111011012026865456
Q gi|254781170|r 169 LVQADLRSLPVPAIRLT-------GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240 (483)
Q Consensus 169 ~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~ 240 (483)
....++.. |....... .......++...+.... .....++|||++|+++|++|+++++.+|+++||.|+.+
T Consensus 160 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGE~~A~~~L~~Fl~~~l~~Y~~~Rn~P~~~ 238 (484)
T 1owl_A 160 PKPTPVAT-PTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEA 238 (484)
T ss_dssp CCCCCCCC-CCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCCCSCCSSCSSHHHHHHHHHHHHHTGGGGHHHHTTCTTSC
T ss_pred CCCCCCCC-CCCCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 56566668-62013555010254432222112446550755344788896299999999997566776246667885667
Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCC
Q ss_conf 66544611114648799999999998643111-23477200102320246888788863357888615301101200010
Q gi|254781170|r 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319 (483)
Q Consensus 241 ~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~-~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~ 319 (483)
+||+|||||||||||||+||+++.+....... +...+...|++||+|||||+++++++|++.. .++++.++.++|+.+
T Consensus 239 ~tSrLSPyL~fG~IS~R~v~~~~~~~~~~~~~~~~~~~~~~f~~eL~WReff~~~l~~~p~~~~-~~~~~~~~~~~~~~~ 317 (484)
T 1owl_A 239 GTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLAD-GPYRSLWQQFPWENR 317 (484)
T ss_dssp CSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGG-SCCSTGGGGCCCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH-HHCCCHHCCCCCCCC
T ss_conf 6565171016765779999999998752100122453146888898999999888872803444-430421103786447
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECC
Q ss_conf 46789987227888688999999997167635899999999998410470022334776641331114745610020127
Q gi|254781170|r 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399 (483)
Q Consensus 320 ~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G 399 (483)
++.|++|++|+|||||||||||||++|||||||||||||||||++|+||||+|+.||+++|||||+|||+|||||+||||
T Consensus 318 ~~~~~~W~~G~TG~PlvDA~MRqL~~tGwmhnr~Rm~vasfl~~~L~~~Wr~g~~~f~~~llD~d~a~n~~~wqw~ag~g 397 (484)
T 1owl_A 318 EALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSG 397 (484)
T ss_dssp HHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHEEECCC
T ss_conf 89999997066787489999999998688558999999999876468789999999998603588657977766222215
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89847022046458988724899783300824327997780495540131257899997631899999999999999964
Q gi|254781170|r 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479 (483)
Q Consensus 400 ~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k 479 (483)
+|++| ||||||++|++||||+|+|||||||||++||+++||+||..+. ++.|||+|||||+++|++|+++|+++|+
T Consensus 398 ~d~~~-~R~~np~~q~~~~Dp~g~yir~wvPeL~~~~~~~i~~~~~~~~---~~~~Yp~pivd~~~~~~~~~~~~~~~k~ 473 (484)
T 1owl_A 398 MDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPI---ERRGYPAPIVNHNLRQKQFKALYNQLKA 473 (484)
T ss_dssp SSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCHH---HHTTSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CEEECHHHHHHHHCCCCCCHHHHCHHHCCCCHHHHCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 69998-6310788999984999771877397532899678539010654---4479986758879999999999999876
Q ss_pred H
Q ss_conf 0
Q gi|254781170|r 480 Q 480 (483)
Q Consensus 480 ~ 480 (483)
+
T Consensus 474 ~ 474 (484)
T 1owl_A 474 A 474 (484)
T ss_dssp H
T ss_pred H
T ss_conf 3
No 7
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=0 Score=979.27 Aligned_cols=464 Identities=26% Similarity=0.445 Sum_probs=398.6
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 4268883586755677899999995798299999738378478------8899899999999999999999975980999
Q gi|254781170|r 8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYASLLQVQKSLSQKGIVFQY 81 (483)
Q Consensus 8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~------~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v 81 (483)
.++||||||||||+||+||.+|++.++ +|+||||+||.++.. +..|++|++|+++||.+|+++|+++|++|++
T Consensus 40 ~vslvWfRrDLRl~DN~AL~~A~~~~~-~Vlpvfi~dp~~~~~~~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~G~~L~v 118 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSSSD-TILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLI 118 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTCS-EEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 618999789954626899999996499-7899999755674444333587758999999999999999999977997799
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH---CCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 965753508999999998709761421001110011001026888752---00000022343455576002378644321
Q gi|254781170|r 82 HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH---RVICKSFDDSVLLPPGSILNHALQMYKVY 158 (483)
Q Consensus 82 ~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~---~~~~~~~~~~~l~~p~~i~~~~~~~~~vf 158 (483)
+. |++.++|.+|+++++|+.||+|++|+++++.||+.|++.|+. .+.+..+++.++++|+.+.++.+++|++|
T Consensus 119 ~~----G~~~~vL~~L~~~~~i~~V~~~~e~~~~~~~rd~~v~~~l~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~v~ 194 (525)
T 2j4d_A 119 RS----GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVY 194 (525)
T ss_dssp EE----SCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSH
T ss_pred EE----CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 98----98899999999983997898357567888888999999988743655420016753213452115778874210
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCC-CCC-CCCHHHH
Q ss_conf 0147998863156632212455445677667555753234764----345546888764333221111-111-0110120
Q gi|254781170|r 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKF-CKE-KVYYYVE 232 (483)
Q Consensus 159 tpf~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~gGe~~A~~~L~~F-l~~-~l~~Y~~ 232 (483)
|+|+|++.+.....++...+..............++....... ......++|||++|.++|.+| ++. .+..|.+
T Consensus 195 t~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~A~~~ll~~f~~~~~~~~y~~ 274 (525)
T 2j4d_A 195 TQFRKSVEAKCSIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKE 274 (525)
T ss_dssp HHHHHHHHHHCCCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCCCCCCCSEEEECCSHHHHHHHHHHHHTTSCCGGGHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCC
T ss_conf 08899888640124554565445776652112444324450468500133434676699999998644654221010000
Q ss_pred CCCCC-CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 26865-45666544611114648799999999998643111234772001023202468887888633578886153011
Q gi|254781170|r 233 QRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311 (483)
Q Consensus 233 ~Rn~p-~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~ 311 (483)
.||.| +.++||+|||||+|||||||+||+++.+...+ .....+.++|++||+|||||+++++++|.... .++.+.+
T Consensus 275 ~r~~~~a~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~--~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~-~~~~~~~ 351 (525)
T 2j4d_A 275 TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKE--RVANNSTYWVLFELIWRDYFRFLSIKCGNSLF-HLGGPRN 351 (525)
T ss_dssp HTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGT-STTTTTT
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH-HCCCHHH
T ss_conf 14687777653101022113668699999999998751--12234258998889999999999882871764-1010342
Q ss_pred HCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCC
Q ss_conf 01200010467899872278886889999999971676358999999999984104700223347766413311147456
Q gi|254781170|r 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391 (483)
Q Consensus 312 ~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~ 391 (483)
+.++|..|++.|++|++|+|||||||||||||++||||||||||||||||||+|+||||+|++||+++|||||||||+||
T Consensus 352 ~~~~w~~d~~~~~~W~~G~TG~PlVDAaMRqL~~tGwmHnr~Rm~vaSFl~k~L~idWr~g~~~F~~~llD~D~a~n~~~ 431 (525)
T 2j4d_A 352 VQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGN 431 (525)
T ss_dssp CCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCHHH
T ss_conf 01243223068999970898985299999999987780589999999999986073968999999986567764338888
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCC--CCCCCCCCCCHHHHHHH
Q ss_conf 1002012789847022046458988724899783300824327997780495540131257--89999763189999999
Q gi|254781170|r 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHH 469 (483)
Q Consensus 392 wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~--~~~YP~pivd~~~~~~~ 469 (483)
|||+||||+|+.|| |||||++||++|||+|+|||||||||++||+++||+||+++...++ +++||+||||++++++.
T Consensus 432 wqw~ag~g~d~~~~-Rifnp~~q~~~~Dp~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~i~~~~~yp~p~v~~~~~~~~ 510 (525)
T 2j4d_A 432 WTYGAGVGNDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLMYMDTVVPLKHGNGPMAGGSKSGGG 510 (525)
T ss_dssp HHHHHTCSSCGGGC-CCCCHHHHHHHHCTTCHHHHHHSGGGTTSCTTTTTSCHHHHTCCCSSCCSCCC------------
T ss_pred HHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHH
T ss_conf 79985678899986-15698899998699986567748874369988716976578544324677696344179999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999640
Q gi|254781170|r 470 TLNQYYAAKKQ 480 (483)
Q Consensus 470 a~~~~~~~~k~ 480 (483)
+++++...|..
T Consensus 511 ~~~~~~~~~~~ 521 (525)
T 2j4d_A 511 FRGSHSGRRSR 521 (525)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
T ss_conf 99988988863
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine photolyase; FAD, DNA repair; HET: FAD; 2.80A {Sulfolobus tokodaii str}
Probab=100.00 E-value=0 Score=956.05 Aligned_cols=429 Identities=33% Similarity=0.569 Sum_probs=369.9
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2688835867556778999999957982999997383784-788899899999999999999999975980999965753
Q gi|254781170|r 9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87 (483)
Q Consensus 9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~-~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~ 87 (483)
.+||||||||||+||+||.+|++.++ +|+||||+||.++ +.+..|.+|++||++||.+|+++|+++|++|+|+.
T Consensus 2 ~~i~WFRrDLRl~DN~aL~~A~~~~~-~vl~vfi~dp~~~~~~~~~s~~~~~Fl~esL~~L~~~L~~~g~~L~v~~---- 76 (440)
T 2e0i_A 2 DCIFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFF---- 76 (440)
T ss_dssp EEEEEESSCCCSSSCHHHHHHHHHSS-EEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEE----
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCC-CEEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE----
T ss_conf 88999689842606899999996699-7999999871887329876899999999999999999997799669997----
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 508999999998709761421001110011001026888752-0000002234345557600237864432101479988
Q gi|254781170|r 88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 (483)
Q Consensus 88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~ 166 (483)
|++.++|.+++. +++.|+++++|+|+++.||+.|++.|+. ++.+.+++++.+.+.. ...+++||||++++.
T Consensus 77 G~~~~vl~~l~~--~i~~v~~~~~~~p~~~~rd~~i~~~~~~~~i~~~~~~~~~~~p~~------~~~~~~ft~~~~~~~ 148 (440)
T 2e0i_A 77 GEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKS------LFHHRNFTSFYNEVS 148 (440)
T ss_dssp SCHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGG------GCCCSSHHHHHHHHT
T ss_pred CCHHHHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC------CCCCCCCHHHHHHHH
T ss_conf 899999999999--703212455678156569999999999749863203565566543------334655218889987
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 63156632212455445677667555753234764345546888764333221111111011012026865456665446
Q gi|254781170|r 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 (483)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 246 (483)
+.....+.. .+......... ...+...... ....+.++|||++|+++|++|+. ...||.|+.++||+||
T Consensus 149 ~~~~~~p~~-~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~gGe~~a~~~l~~fl~------~~~r~~p~~~~tSrLS 217 (440)
T 2e0i_A 149 KVKVREPET-MEGSFDVTDSS---MNVDFLLTFK-KIESPLFRGGRREGLYLLHRNVD------FRRRDYPAENNNYRLS 217 (440)
T ss_dssp TSCCCCCCC-CCCCBCCCSSS---BCGGGGGGTC-CCCCTTCCCSHHHHHHHHTCCCC------GGGTTCTTTTCCCCCH
T ss_pred HHCCCCCCC-CCCCCCCCCCC---CCCHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHH------HCCCCCCCCCCCCCCC
T ss_conf 402478300-12335664223---5620210123-35774230799999999988876------5247987656776557
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHH
Q ss_conf 11114648799999999998643111234772001023202468887888633578886153011012000104678998
Q gi|254781170|r 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 (483)
Q Consensus 247 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW 326 (483)
|||+|||||||+|++++ .+.++|++||+|||||+++++++|++.. .++.+.++.++|+.|++.|++|
T Consensus 218 PyLa~G~IS~R~v~~~~------------~~~~~~~~EL~WRef~~~~~~~~p~~~~-~~~~~~~~~~~w~~~~~~~~~W 284 (440)
T 2e0i_A 218 PHLKFGTISMREAYYTQ------------KGKEEFVRELYWRDFFTLLAYYNPHVFG-HCYRREYDNISWENNESYFEAW 284 (440)
T ss_dssp HHHHTTSSCHHHHHHHS------------TTCHHHHHHHHHHHHHHHHHHHCGGGTT-SCSSGGGGGCCCCCCHHHHHHH
T ss_pred CCEEEEEECHHHHHHHH------------HCCHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHCCCCCCCHHHHHHH
T ss_conf 56145430699999985------------3616667887550688999995980155-3210554058853488989998
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 72278886889999999971676358999999999984104700223347766413311147456100201278984702
Q gi|254781170|r 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 (483)
Q Consensus 327 ~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~ 406 (483)
|+|+|||||||||||||++||||||||||||||||||+|+||||+||+||+++|||||||||+|||||+||||+|+. +
T Consensus 285 ~~G~TG~P~VDA~MRqL~~TGwmhnR~Rm~vaSfl~~~L~idWr~G~~~f~~~liD~d~a~n~~~Wq~~ag~g~d~~--~ 362 (440)
T 2e0i_A 285 KEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--F 362 (440)
T ss_dssp HHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCCS--C
T ss_pred HCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC--C
T ss_conf 66998867999999986500887679999999999860376869999999986557770128877378747888877--6
Q ss_pred CCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 204645898872489978330082432799778049554013125789999763189999999999999996400
Q gi|254781170|r 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481 (483)
Q Consensus 407 Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~~ 481 (483)
|||||++||++|||+|+|||||||||++||+++||+||+++ +.|||.|||||+++|++|+++|+++||.-
T Consensus 363 R~fnp~~q~~~~Dp~g~yir~wvPeL~~~p~~~ih~p~~~~-----~~~Yp~pivd~~~~~~~~~~~~~~~~~~~ 432 (440)
T 2e0i_A 363 RVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYKTK-----VPGYPSPIVNWLERVNYVKSEYKNVKAVL 432 (440)
T ss_dssp CCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTTSC-----CTTSCCCSSCHHHHHHHHHHHHHHC----
T ss_pred EEECHHHHHHHHCCCCCCHHHHCHHHHCCCHHHHCCHHHCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 30279899998599975288848774459977848972387-----77999775889999999999999999999
No 9
>2j07_A Deoxyribodipyrimidine photo-lyase; chromophore, DNA binding protein, flavoprotein, nucleotide- binding, antenna chromophore; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=0 Score=927.05 Aligned_cols=420 Identities=33% Similarity=0.563 Sum_probs=371.3
Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 64268883586755677899999995798299999738378478889989999999999999999997598099996575
Q gi|254781170|r 7 MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86 (483)
Q Consensus 7 M~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~ 86 (483)
|.-.||||||||||+||+||.+|++. ++|+||||+||.+++ .+++|++|++|||.+|+++|+++|++|+++.
T Consensus 1 ~gpvlvWfRrDLRl~DN~aL~~A~~~--~~vl~vfi~dp~~~~---~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~--- 72 (420)
T 2j07_A 1 MGPLLVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLK---TTPRRRAWFLENVRALREAYRARGGALWVLE--- 72 (420)
T ss_dssp -CCEEEEESSCCCSTTCHHHHHHHTT--SCEEEEEEECHHHHS---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE---
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCC---CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE---
T ss_conf 99889998998425057999999837--998999998774323---4999999999999999999996899879999---
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 35089999999987097614210011100110010268887520000002234345557600237864432101479988
Q gi|254781170|r 87 FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI 166 (483)
Q Consensus 87 ~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~ 166 (483)
|++.++|.+++++++|+.||++++|++++..||..|++.+. +..+.+.+++.+.+..+++|++||||++.+.
T Consensus 73 -G~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 144 (420)
T 2j07_A 73 -GLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALP-------VPLHLLPAPHLLPPDLPRAYRVYTPFSRLYR 144 (420)
T ss_dssp -SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCS-------SCEEEECCCCSSCTTCSSCCSSHHHHHTTCC
T ss_pred -ECHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCCC-------CCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf -68699999999973742332112213211567776642245-------6836862144443337884324407888877
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 63156632212455445677667555753234764345546888764333221111111011012026865456665446
Q gi|254781170|r 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246 (483)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 246 (483)
....+ .|.|... ........++.. ......++|||++|+++|++|+++++.+|.++||.|+.++||+||
T Consensus 145 ~~~~~-----~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLS 213 (420)
T 2j07_A 145 GAAPP-----LPPPEAL-PKGPEEGEIPRE-----DPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213 (420)
T ss_dssp CCCCC-----CCCCSSC-CCCCCCCCCCCC-----CCSSCCCCCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCCH
T ss_pred HCCCC-----CCCCCCC-CCCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCC
T ss_conf 50378-----8872003-456411247633-----345777998879999999999985002110105677644554404
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHH
Q ss_conf 11114648799999999998643111234772001023202468887888633578886153011012000104678998
Q gi|254781170|r 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326 (483)
Q Consensus 247 PyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW 326 (483)
|||||||||||+|++++.+. .+++.++|++||+|||||+++++++|.+.. .++.+.++.++|..|++.|++|
T Consensus 214 PyL~fG~IS~R~v~~~~~~~-------~~~~~~~~~~eL~WRef~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~W 285 (420)
T 2j07_A 214 PYFALGVLSPRLAAWEAERR-------GGEGARKWVAELLWRDFSYHLLYHFPWMAE-RPLDPRFQAFPWQEDEALFQAW 285 (420)
T ss_dssp HHHHTTSSCHHHHHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHCGGGGT-SCSSGGGTTCCCCCCHHHHHHH
T ss_pred HHHHCEECCHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHCCHHHH-HCCCHHHHCCCCCCCHHHHHHH
T ss_conf 46630421599999999986-------053003456788999999999884818887-5035243014422558999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 72278886889999999971676358999999999984104700223347766413311147456100201278984702
Q gi|254781170|r 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406 (483)
Q Consensus 327 ~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~ 406 (483)
++|+|||||||||||||++|||||||||||||||||++|+||||+||.||+++|||||||||+|||||+||||+|++|||
T Consensus 286 ~~G~TG~P~vDA~MrqL~~tG~mhnr~Rm~~asfl~~~L~~~Wr~g~~~f~~~llD~d~~~n~~~wq~~ag~G~~~~~~~ 365 (420)
T 2j07_A 286 YEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYF 365 (420)
T ss_dssp HTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGCCTT
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 83777751699999997650897739999999999986399879999999986637870028898887537688998764
Q ss_pred CCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 20464589887248997833008243279977804955401312578999976318999999999999999640
Q gi|254781170|r 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480 (483)
Q Consensus 407 Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k~ 480 (483)
|||||++||++|||+|+|||||||||+++| ||.|||||+++|++|+++|++++|.
T Consensus 366 R~~np~~q~~~~Dp~g~fIr~wvPEL~~~~-------------------~~~pivd~~~~r~~~~~~~~~~~~~ 420 (420)
T 2j07_A 366 RVFNPVLQGERHDPEGRWLKRWAPEYPSYA-------------------PKDPVVDLEEARRRYLRLARDLARG 420 (420)
T ss_dssp CCCCHHHHHHHHSTTSHHHHHHCTTCSSSS-------------------CSSCSSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHCCCCCCHHHHCHHHCCCC-------------------CCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 112898999986989763887481211799-------------------8999437899999999999973278
No 10
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=63.14 E-value=1.2 Score=22.38 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=15.6
Q ss_pred HHHHCCCCCEEHCCCHHHHCC
Q ss_conf 887248997833008243279
Q gi|254781170|r 415 GKRFDPQGTFIRHWLPELNNV 435 (483)
Q Consensus 415 ~~~~Dp~g~~ir~wvPeL~~~ 435 (483)
..+|||+|+|.++|--+++.+
T Consensus 87 ~~KyDP~g~y~~k~e~~~~~~ 107 (109)
T 2gvs_A 87 KAKYDPDGTYSKKYEDREKEL 107 (109)
T ss_dssp HHHHCTTCTTTHHHHTTTCCS
T ss_pred HHHHCCCCHHHHHHHHHHHHH
T ss_conf 998596956999999999874
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus}
Probab=54.32 E-value=9.5 Score=16.63 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=54.4
Q ss_pred HHHHHHHH---HCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999999---579829999973837847888998999999999999999999759809999657535089999999987
Q gi|254781170|r 24 KALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100 (483)
Q Consensus 24 ~aL~~A~~---~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~ 100 (483)
.||..|++ ..+.++..|++.++.. ........-.-+-|..+.+.+++.|....+......|++.+.|.+++++
T Consensus 40 ~al~~A~~~A~~~~~~l~lvhv~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~ 115 (155)
T 3dlo_A 40 RVLRFAAEEARLRGVPVYVVHSLPGGG----RTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADE 115 (155)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECCST----TSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 999999999998399699999743887----7766789999999999999999849994899999578989999999987
Q ss_pred CCCCCEEEEC
Q ss_conf 0976142100
Q gi|254781170|r 101 QRVTKLFYNR 110 (483)
Q Consensus 101 ~~i~~v~~n~ 110 (483)
.+++-|++-.
T Consensus 116 ~~adLIV~G~ 125 (155)
T 3dlo_A 116 VDAIAIVIGI 125 (155)
T ss_dssp TTCSEEEEEC
T ss_pred CCCCEEEECC
T ss_conf 2998998568
No 12
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58}
Probab=51.39 E-value=2.5 Score=20.35 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=60.9
Q ss_pred CHHCCHHHHHHHHHCCCCCCHHH--HHHHHHHHHC-C---CCHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHCCCHH
Q ss_conf 00010467899872278886889--9999999716-7---6358999999999984104700--2233477664133111
Q gi|254781170|r 315 EWNKDSHLLQAWKQGYTGFPIID--AAMRQLNTIG-W---MHNRLRMITASFLVKDLLVDWR--IGEEYFMSQLLDGDLA 386 (483)
Q Consensus 315 ~w~~~~~~~~aW~~G~TG~PlVD--A~MR~L~~tG-~---mhnr~Rm~vaSfl~~~L~idWr--~g~~~f~~~llD~d~~ 386 (483)
+|.++.-.+++|=.-+.+-|.-| .-++.|.+.- | -.||.|.++++|..++-..|=. .|-+++++.++.-|.-
T Consensus 736 ~wk~~~lv~dkWf~~qa~~~~~~~~~~v~~L~~h~~f~~~nPN~~rsl~g~f~~n~~~Fh~~dg~Gy~~~~~~i~~ld~~ 815 (867)
T 2gtq_A 736 KFSDDALVMDKYFALVGSSRRSDTLQQVRTALQHPKFSLENPNKARSLIGSFSRNVPHFHAEDGSGYRFIADKVIEIDRF 815 (867)
T ss_dssp HTTTCHHHHHHHHHHHHHCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHTCHHHHTCTTSHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 86799515677789873488848899999985498889689868799999985793444089996899999999987585
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 4745610020127898470220464589887
Q gi|254781170|r 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 (483)
Q Consensus 387 ~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~ 417 (483)
+= |-+|.... +-...|.|+|..|+.-
T Consensus 816 Np----q~aarl~~-~~~~~~~~~~~~~~~~ 841 (867)
T 2gtq_A 816 NP----QVAARLVQ-AFNLCNKLEPHRKNLV 841 (867)
T ss_dssp CH----HHHHHHGG-GGTTGGGBCHHHHHHH
T ss_pred CH----HHHHHHHH-HHHHHHHHCHHHHHHH
T ss_conf 88----99999999-9988975489899999
No 13
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, cytoplasm, metal-binding, metalloprotease, protease, zinc, hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A*
Probab=51.34 E-value=2.5 Score=20.37 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=61.7
Q ss_pred CHHCCHHHHHHHHHCCCCCCHHHH--HHHHHHHH-CC---CCHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHCCCHH
Q ss_conf 000104678998722788868899--99999971-67---6358999999999984104700--2233477664133111
Q gi|254781170|r 315 EWNKDSHLLQAWKQGYTGFPIIDA--AMRQLNTI-GW---MHNRLRMITASFLVKDLLVDWR--IGEEYFMSQLLDGDLA 386 (483)
Q Consensus 315 ~w~~~~~~~~aW~~G~TG~PlVDA--~MR~L~~t-G~---mhnr~Rm~vaSfl~~~L~idWr--~g~~~f~~~llD~d~~ 386 (483)
+|.+|.-.+++|=.-+-+-|.-|+ -.+.|.+. =| -.||+|.++.+|..+....|=. .|.+++++.++.-|+-
T Consensus 757 ~w~~~~lv~dkWf~~qa~~~~~~~~~~v~~L~~h~~F~~~nPNr~Rsl~g~f~~N~~~Fh~~dg~GY~~~a~~i~~ld~~ 836 (889)
T 3ebh_A 757 LSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRRFHDISGKGYKLIAEVITKTDKF 836 (889)
T ss_dssp HHTTSHHHHHHHHHHHHTCCCTTHHHHHHHHHHHTTTTCCCHHHHHHHHTGGGGCHHHHTCTTSHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 86799678999999973789868999999985698889679838789999984790776289997799999999987384
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 4745610020127898470220464589887
Q gi|254781170|r 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417 (483)
Q Consensus 387 ~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~ 417 (483)
+= |-+|..-. +-...|.|+|..|+.-
T Consensus 837 Np----q~aarl~~-~~~~~~~~~~~r~~~m 862 (889)
T 3ebh_A 837 NP----MVATQLCE-PFKLWNKLDTKRQELM 862 (889)
T ss_dssp CH----HHHHHTTG-GGGGGGGBCHHHHHHH
T ss_pred CH----HHHHHHHH-HHHHHHHCCHHHHHHH
T ss_conf 88----99999999-9988884399899999
No 14
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=48.43 E-value=12 Score=16.04 Aligned_cols=87 Identities=13% Similarity=0.030 Sum_probs=51.9
Q ss_pred HHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHHHHHCC
Q ss_conf 89999999579829999973837847888998999999999999999999759809999657-53508999999998709
Q gi|254781170|r 24 KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS-NFDDSIEWLDSYCLQQR 102 (483)
Q Consensus 24 ~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~-~~g~~~~~L~~l~~~~~ 102 (483)
.||+.|.+.+ ..|.+++..-|.. ..+..|-.-.+.-+..+-+.+|++|+..... ..++..+.+.+..+..+
T Consensus 19 lAl~~a~~~G-~~v~~L~t~~~~~-------~~s~~~h~~~~~ll~~qA~algiPL~~~~~~~~~e~~~~~l~~~l~~~~ 90 (227)
T 2d13_A 19 YALYWALKSG-LRVRYLVSMVSEN-------EESYMYHTPNVELTSLQARALGIPIIKGFTKGEKEKEVEDLKNVLEGLK 90 (227)
T ss_dssp HHHHHHHHTT-CEEEEEEEEECCC----------------CCTTHHHHHHHHTCCEEEEEC--CTTSHHHHHHHHHHTBC
T ss_pred HHHHHHHHCC-CEEEEEEEEECCC-------CCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999869-9279999974388-------8814155778999999999759971787467861589999999999717
Q ss_pred CCCEEEECCCCCHHHH
Q ss_conf 7614210011100110
Q gi|254781170|r 103 VTKLFYNRQYEINEVR 118 (483)
Q Consensus 103 i~~v~~n~~~~~~~~~ 118 (483)
++.|.+-.-...+.+.
T Consensus 91 v~~iv~Gdi~~~~~~~ 106 (227)
T 2d13_A 91 VDGIVAGALASRYQKE 106 (227)
T ss_dssp CSEEECCCSSCHHHHH
T ss_pred CCEEEEEEEEEHHHHH
T ss_conf 5607862376288999
No 15
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=46.55 E-value=2.8 Score=20.04 Aligned_cols=19 Identities=16% Similarity=0.541 Sum_probs=13.0
Q ss_pred HHHHCCCCCEEHCCCHHHH
Q ss_conf 8872489978330082432
Q gi|254781170|r 415 GKRFDPQGTFIRHWLPELN 433 (483)
Q Consensus 415 ~~~~Dp~g~~ir~wvPeL~ 433 (483)
..+|||+|+|.+++--+++
T Consensus 85 ~~KYDP~g~y~~k~~~~~~ 103 (112)
T 1k19_A 85 TAKYDPTGNWRKKYEDRAK 103 (112)
T ss_dssp HHSSTTTCSSHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHH
T ss_conf 9986989569999999999
No 16
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=41.76 E-value=6.2 Score=17.83 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.4
Q ss_pred HCCCCHHHHHHHHHHHH
Q ss_conf 16763589999999999
Q gi|254781170|r 346 IGWMHNRLRMITASFLV 362 (483)
Q Consensus 346 tG~mhnr~Rm~vaSfl~ 362 (483)
-||||-|||-=|++|+-
T Consensus 277 KaYmHsRMR~Rv~~flk 293 (317)
T 3dwl_D 277 KAYMHQRMRKRVADFQK 293 (317)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999
No 17
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D*
Probab=38.24 E-value=7.6 Score=17.27 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=11.5
Q ss_pred HCCCCHHHHHHHHHHHH
Q ss_conf 16763589999999999
Q gi|254781170|r 346 IGWMHNRLRMITASFLV 362 (483)
Q Consensus 346 tG~mhnr~Rm~vaSfl~ 362 (483)
-+|||-|||-=|++|+-
T Consensus 259 KaYmHsRMR~Rv~~flk 275 (300)
T 1k8k_D 259 KAYIHTRMRAKTSDFLK 275 (300)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 18
>3odh_A Okrai endonuclease; alpha and beta proteins (A/B), restriction endonuclease-like phosphodiesterase; HET: DNA; 2.30A {Oceanobacter kriegii}
Probab=38.03 E-value=12 Score=15.89 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=4.1
Q ss_pred HHHHHHHHHC
Q ss_conf 1479988631
Q gi|254781170|r 160 PFRKALIQNL 169 (483)
Q Consensus 160 pf~k~~~~~~ 169 (483)
|....|+..+
T Consensus 54 PIKe~cM~~L 63 (194)
T 3odh_A 54 PIKNSCMRHL 63 (194)
T ss_dssp GGGHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 0489999987
No 19
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylalanine, membrane, metal-binding, metalloprotease, zinc; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 2dq6_A 2dqm_A* 2zxg_A*
Probab=37.96 E-value=6.7 Score=17.62 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=51.9
Q ss_pred CHHCCHHHHHHHHHCCCCCCHHHH--HHHHHHHH-CC---CCHHHHHHHHHHHHHH-HCCCHH--HHHHHHHHHHHCCCH
Q ss_conf 000104678998722788868899--99999971-67---6358999999999984-104700--223347766413311
Q gi|254781170|r 315 EWNKDSHLLQAWKQGYTGFPIIDA--AMRQLNTI-GW---MHNRLRMITASFLVKD-LLVDWR--IGEEYFMSQLLDGDL 385 (483)
Q Consensus 315 ~w~~~~~~~~aW~~G~TG~PlVDA--~MR~L~~t-G~---mhnr~Rm~vaSfl~~~-L~idWr--~g~~~f~~~llD~d~ 385 (483)
+|.+|.-.+++|=.-+.+-|.-|+ -.+.|.+. -| -.||+|.++.+|...| ...|=. .|.+++++..+.-|.
T Consensus 759 ~wk~~~lv~dkwf~~qa~~~~~~~~~~v~~L~~h~~F~~~nPN~~rsl~~~f~~~n~~~fh~~~g~Gy~~~~~~i~~ld~ 838 (891)
T 3b34_A 759 KWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNS 838 (891)
T ss_dssp HHTTCHHHHHHHHHHHHTCCCTTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 87899229998899970888879999999985598888689838199999987239164318999789999999998748
Q ss_pred HCCCCCCCEEE
Q ss_conf 14745610020
Q gi|254781170|r 386 ASNNGGWQWAA 396 (483)
Q Consensus 386 ~~n~~~wq~~a 396 (483)
-+= |-+|
T Consensus 839 ~Np----q~aa 845 (891)
T 3b34_A 839 RNP----QVAS 845 (891)
T ss_dssp HCH----HHHH
T ss_pred CCH----HHHH
T ss_conf 588----9999
No 20
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=35.15 E-value=19 Score=14.74 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHH---CCCCEEEEEEECHHHHCCCCC------------------CHHHH---HHHHHHHHHHHHHHHHCC
Q ss_conf 677899999995---798299999738378478889------------------98999---999999999999999759
Q gi|254781170|r 21 TDNKALYAACHN---SDAKVIAVFIATPEQWRQHGI------------------SARQS---HFIYASLLQVQKSLSQKG 76 (483)
Q Consensus 21 ~DN~aL~~A~~~---~~~~vlpvyi~dp~~~~~~~~------------------~~~~~---~Fl~esL~~L~~~L~~~g 76 (483)
....||..|+.. .+..+..++|+++........ ...+. ....+-|.++...+...|
T Consensus 17 ~s~~al~~a~~~A~~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 96 (162)
T 1mjh_A 17 TAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELEDVG 96 (162)
T ss_dssp HHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999987449969999984256555443322224533222017788999999999999999999999887659
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 8099996575350899999999870976142100
Q gi|254781170|r 77 IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 (483)
Q Consensus 77 ~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~ 110 (483)
+....... .|++.+.|.+.+++.+++-|+.-.
T Consensus 97 v~~~~~~~--~G~~~~~I~~~a~~~~~DlIVvG~ 128 (162)
T 1mjh_A 97 FKVKDIIV--VGIPHEEIVKIAEDEGVDIIIMGS 128 (162)
T ss_dssp CEEEEEEE--EECHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEE--ECCHHHHHHHHHCCCCCCEEEECC
T ss_conf 76999999--367899999873356589899847
No 21
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3}
Probab=25.01 E-value=28 Score=13.64 Aligned_cols=83 Identities=7% Similarity=0.043 Sum_probs=45.0
Q ss_pred HHHHHHHHH---CCCCEEEEEEECHHHHCCCC-------------CCHHHHHH---HHHHHHHHHHHHHHC--CC--EEE
Q ss_conf 899999995---79829999973837847888-------------99899999---999999999999975--98--099
Q gi|254781170|r 24 KALYAACHN---SDAKVIAVFIATPEQWRQHG-------------ISARQSHF---IYASLLQVQKSLSQK--GI--VFQ 80 (483)
Q Consensus 24 ~aL~~A~~~---~~~~vlpvyi~dp~~~~~~~-------------~~~~~~~F---l~esL~~L~~~L~~~--g~--~L~ 80 (483)
.|+..|++. .+..+..++|+++....... ....+-.. ..+-+.++...+... +. ...
T Consensus 20 ~a~~~a~~la~~~~a~l~llhVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 99 (170)
T 2dum_A 20 RAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFRAKNVRTI 99 (170)
T ss_dssp HHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999987639979999996375323334543334541023379999999999999999999988875799757999
Q ss_pred EEECCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 996575350899999999870976142100
Q gi|254781170|r 81 YHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110 (483)
Q Consensus 81 v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~ 110 (483)
+. .|++.+.|.+++++.+++-|+.-.
T Consensus 100 i~----~G~~~~~I~~~a~~~~~DliVmG~ 125 (170)
T 2dum_A 100 IR----FGIPWDEIVKVAEEENVSLIILPS 125 (170)
T ss_dssp EE----EECHHHHHHHHHHHTTCSEEEEES
T ss_pred EE----ECCHHHHHHHHCCCCCCCEEEEEC
T ss_conf 98----266788520120256567899805
No 22
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=23.86 E-value=30 Score=13.51 Aligned_cols=73 Identities=10% Similarity=0.037 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECC
Q ss_conf 999999999999997598099996575350899999999870976142100111001100102688875200000022
Q gi|254781170|r 60 FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137 (483)
Q Consensus 60 Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~ 137 (483)
|.-+-+..+.+++++.|..+.+.....-.+..+.+.+++...+++.|+..-.. ..+..++...+.++++..++
T Consensus 22 ~~~~~~~~i~~~a~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vDGiIv~~~~-----~~~~~~~~l~~~~iPvV~i~ 94 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN-----YNDPRVQFLLKQKFPFVAFG 94 (287)
T ss_dssp THHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC-----TTCHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHCCCCEEEEC
T ss_conf 89999999999999779999999689998999999999981898789997898-----99899999996799799988
Done!