HHSEARCH alignment of GI: 254781170 and SCOP domain: d1dnpa1

Alignment
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=693.25  Aligned_cols=269  Identities=60%  Similarity=1.125  Sum_probs=256.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHH
Q ss_conf             88764333221111111011012026865456665446111146487999999999986431112347720010232024
Q gi|254781170|r  209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR  288 (483)
Q Consensus       209 ~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~fl~eL~WR  288 (483)
                      ||||++|+++|++||++++.+|.++||.|+.++||+|||||+||+||||+|++++.+...+  .....+...|++||+||
T Consensus         1 P~Ge~aAl~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~ISprev~~~v~~~~~~--~~~~~~~~~~l~eL~wR   78 (269)
T d1dnpa1           1 PVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ--ALDGGAGSVWLNELIWR   78 (269)
T ss_dssp             CCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSCCSCCCHHHHHHTSSCHHHHHHHHHHHCGG--GGGTSTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHH
T ss_conf             9889999999999998588887675389898898067687768858899999999975000--00245405677644445


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             68887888633578886153011012000104678998722788868899999999716763589999999999841047
Q gi|254781170|r  289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD  368 (483)
Q Consensus       289 ef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaSfl~~~L~id  368 (483)
                      ||+++.++++|......++....+.++|+.+++.|++|++|+||+|+||||||||++|||||||||||||||||++|+||
T Consensus        79 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~G~Tg~p~vDAamr~L~~tG~mhn~~Rm~~as~l~~~l~i~  158 (269)
T d1dnpa1          79 EFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLID  158 (269)
T ss_dssp             HHHHHHHHHCGGGGGTCCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             66543322133165312310012333223572777520289867569999999876057423899999999999854325


Q ss_pred             HHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHHHCCHHHHHH
Q ss_conf             00223347766413311147456100201278984702204645898872489978330082432799778049554013
Q gi|254781170|r  369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD  448 (483)
Q Consensus       369 Wr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~ih~p~~~~~  448 (483)
                      ||+|++||+++|||||||+|++||||+||||+|++||+|||||++|++++||+|+|||+|||||+++|+++||+||+++.
T Consensus       159 W~~g~~~f~~~llD~d~~~n~~~wq~~ag~g~~~~~~~r~~np~~q~~~~Dp~g~~ir~w~pel~~~p~~~ih~p~~~~~  238 (269)
T d1dnpa1         159 WREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQ  238 (269)
T ss_dssp             HHHHHHHHHTTCTTCCHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCHHHCCCCHHHCCCHHHCCH
T ss_conf             21559999999875686667888876504677754224653167888875889606998470310499776079332453


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             1257899997631899999999999999964
Q gi|254781170|r  449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK  479 (483)
Q Consensus       449 ~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k  479 (483)
                      ++.++.|||+||||++++|++|+++|+++||
T Consensus       239 ~~~~~~~Yp~pivd~~~~r~~~~~~~~~~~k  269 (269)
T d1dnpa1         239 KAGVTLDYPQPIVEHKEARVQTLAAYEAARK  269 (269)
T ss_dssp             TTTCCCSSCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             2076789960118999999999999999609


SCOP domain information

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: C-terminal domain of DNA photolyase
species: Escherichia coli [TaxId: 562]