HHSEARCH alignment of GI: 254781170 and SCOP domain: d1dnpa2

Alignment
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=2.8e-43  Score=292.05  Aligned_cols=177  Identities=45%  Similarity=0.819  Sum_probs=161.9

Q ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             42688835867556778999999957982999997383784788899899999999999999999975980999965753
Q gi|254781170|r    8 SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF   87 (483)
Q Consensus         8 ~~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~   87 (483)
                      |++||||||||||+||+||.+|++.++.+|+||||+||.+++.++.|.+|.+|+.+||.+|+++|+++|++|+++.|+.+
T Consensus         1 ~t~LvWfRrDLRl~DN~aL~~A~~~~~~~v~~vyi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~g~~~   80 (200)
T d1dnpa2           1 TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF   80 (200)
T ss_dssp             CEEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             92899967877646379999999819993899999743464145744666656788888887664303420699980652


Q ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             50899999999870976142100111001100102688875200000022343455576002378644321014799886
Q gi|254781170|r   88 DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ  167 (483)
Q Consensus        88 g~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~  167 (483)
                      +++.++|.+++++++|+.||+|++|+++++.||.+|++.|+ ++.++.+++++|++|++|+++.|++|+|||||+|+|.+
T Consensus        81 ~~~~~~l~~l~~~~~i~~v~~n~~~~~~~~~rd~~v~~~l~-~i~~~~~~~~~L~~p~~v~~~~g~~y~VFTpF~k~~~~  159 (200)
T d1dnpa2          81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK  159 (200)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCT-TSEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             22125789999861972899742420889989999999853-40124567404415321246899999647789999997


Q ss_pred             HCCCCCCCCCCCCCCCCC
Q ss_conf             315663221245544567
Q gi|254781170|r  168 NLVQADLRSLPVPAIRLT  185 (483)
Q Consensus       168 ~~~~~~~~~~p~~~~~~~  185 (483)
                      .+....+.+.+.|.....
T Consensus       160 ~~~~~~p~~~~~P~~~~~  177 (200)
T d1dnpa2         160 RLREGMPECVAAPKVRSS  177 (200)
T ss_dssp             HHHTCCCCCCCCCCCCTT
T ss_pred             HCCCCCCCCCCCCCCCCC
T ss_conf             433346888899987675


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: DNA photolyase
species: Escherichia coli [TaxId: 562]