HHSEARCH alignment of GI: 254781170 and SCOP domain: d1owla2

Alignment
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00  E-value=1.4e-40  Score=274.95  Aligned_cols=159  Identities=24%  Similarity=0.364  Sum_probs=150.0

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r   10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD   89 (483)
Q Consensus        10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~   89 (483)
                      .||||||||||+||+||.+|++.++ +|+||||+||.+++.++.|++|++|+++||.+|+++|+++|+.|.|+.    |+
T Consensus         3 ~l~Wfr~DLRl~DN~aL~~A~~~~~-~v~~vyi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~i~~----G~   77 (202)
T d1owla2           3 ILFWHRRDLRLSDNIGLAAARAQSA-QLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ----GD   77 (202)
T ss_dssp             EEEEESSCCCSSSCHHHHHHHHHCS-CEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE----SC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHCCC-CEEEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE----EE
T ss_conf             9999799875212799999996699-699999986438535015677899999999999876630466417998----52


Q ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHH-CCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8999999998709761421001110011001026888752-000000223434555760023786443210147998863
Q gi|254781170|r   90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN  168 (483)
Q Consensus        90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~-~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~  168 (483)
                      +.++|.+++++++|++||+|++|++++++||..|++.|+. ++.++.+++++|++|+++.++.|++|+|||||+|+|++.
T Consensus        78 ~~~~l~~l~~~~~i~~v~~~~~~~~~~~~rd~~i~~~~~~~~i~~~~~~~~~L~~p~~v~~~~g~~~~vFTpF~k~~~~~  157 (202)
T d1owla2          78 PQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQ  157 (202)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHS
T ss_pred             EECCCHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             00100112012344225786305402325788774444322332201241211375531479998014349999999856


Q ss_pred             CCCCC
Q ss_conf             15663
Q gi|254781170|r  169 LVQAD  173 (483)
Q Consensus       169 ~~~~~  173 (483)
                      ....+
T Consensus       158 ~~~~p  162 (202)
T d1owla2         158 PKPTP  162 (202)
T ss_dssp             CCCCC
T ss_pred             CCCCC
T ss_conf             89988


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: DNA photolyase
species: Synechococcus elongatus [TaxId: 32046]