HHSEARCH alignment of GI: 254781170 and SCOP domain: d1u3da1

Alignment
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00  E-value=0  Score=701.13  Aligned_cols=275  Identities=33%  Similarity=0.590  Sum_probs=252.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHH----CCCCCCCCH
Q ss_conf             5546888764333221111111011012026865456665446111146487999999999986431----112347720
Q gi|254781170|r  204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL----LIKPKSGAF  279 (483)
Q Consensus       204 ~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~R~v~~~~~~~~~~~----~~~~~~~~~  279 (483)
                      ....|++||++|+++|++||++++.+|.++||.|+.++||+|||||+|||||||+|+++++......    ......+.+
T Consensus        12 ~~~~W~pGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tSrLSPyL~~G~IS~ReV~~~v~~~~~~~~~~~~~~~~~~~~   91 (300)
T d1u3da1          12 LARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVN   91 (300)
T ss_dssp             HHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             83768866999999999999803777756348988668751468782898879999999998877665411344545599


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             01023202468887888633578886153011012000104678998722788868899999999716763589999999
Q gi|254781170|r  280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS  359 (483)
Q Consensus       280 ~fl~eL~WRef~~~~~~~~P~~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~PlVDA~MR~L~~tG~mhnr~Rm~vaS  359 (483)
                      .|++||+||||++++++++|.... .++.+.++.++|..|++.|++|++|+||||+||||||||++||||||||||||||
T Consensus        92 ~fi~eL~wRef~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~w~~G~TG~p~vDA~mr~L~~tG~mhnr~Rm~vaS  170 (300)
T d1u3da1          92 LFLKSIGLREYSRYISFNHPYSHE-RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS  170 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHSSTTTTT-SCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf             999998888889999985456540-2122210012223687888888850255349999999998611147789999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEHCCCHHHHCCCHHH
Q ss_conf             99984104700223347766413311147456100201278984702204645898872489978330082432799778
Q gi|254781170|r  360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY  439 (483)
Q Consensus       360 fl~~~L~idWr~g~~~f~~~llD~d~~~n~~~wq~~a~~G~d~~~~~Ri~np~~q~~~~Dp~g~~ir~wvPeL~~~p~~~  439 (483)
                      |||++|+||||.|++||+++|||||||+|++||||+||+|+|++||+|||||++|+++|||+|+|||||||||+++|+++
T Consensus       171 fl~~~L~i~W~~ga~~f~~~l~D~d~a~n~~~wq~~ag~g~~~~~~~ri~np~~q~~~~Dp~g~fir~wvPEL~~~p~~~  250 (300)
T d1u3da1         171 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDW  250 (300)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHCCCCHHHHHHCHHHHCCCHHH
T ss_conf             99987164432579999998725442058899999983150011101344288999883675327988682411499787


Q ss_pred             HCCHHHHHH------HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             049554013------1257899997631899999999999999964
Q gi|254781170|r  440 IHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK  479 (483)
Q Consensus       440 ih~p~~~~~------~~~~~~~YP~pivd~~~~~~~a~~~~~~~~k  479 (483)
                      ||+||+++.      .+.+|.+||.||||++++|++|+++++++.+
T Consensus       251 ih~Pw~~~~~~~~~~~~~~g~~Yp~pivd~~~~~~r~~~~~~~~~~  296 (300)
T d1u3da1         251 IHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQ  296 (300)
T ss_dssp             HTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             4795428888998809866889972228889999999999999987


SCOP domain information

class: All alpha proteins
fold: Cryptochrome/photolyase FAD-binding domain
superfamily: Cryptochrome/photolyase FAD-binding domain
family: Cryptochrome/photolyase FAD-binding domain
domain: Cryptochrome C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]