HHSEARCH alignment of GI: 254781170 and SCOP domain: d1u3da2

Alignment
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00  E-value=2.1e-40  Score=273.84  Aligned_cols=158  Identities=24%  Similarity=0.386  Sum_probs=147.9

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             26888358675567789999999579829999973837847888998999999999999999999759809999657535
Q gi|254781170|r    9 VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD   88 (483)
Q Consensus         9 ~~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g   88 (483)
                      ++||||||||||+||+||.+|++.+  +|+||||+||.+++..+.|.+|.+|+.+||.+|+++|+++|+.|+++.+   |
T Consensus         1 ~SlvWFR~DLRl~DN~aL~~A~~~~--~vi~vfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~g~~L~v~~~---g   75 (185)
T d1u3da2           1 CSIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRS---T   75 (185)
T ss_dssp             CEEEEESSCCCSTTCHHHHHHHHHS--CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC---S
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHCC--CEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC---C
T ss_conf             9899989977704189999999679--9899999734474235727789999999999988888743886247632---5


Q ss_pred             CHHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHH-HCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             0899999999870976142100111001100102688875-200000022343455576002378644321014799886
Q gi|254781170|r   89 DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ  167 (483)
Q Consensus        89 ~~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~-~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~  167 (483)
                      +++++|.+++++++|++||+|++|+++++.||+.|.+.|+ .++.++.+++++|++|++|.++.|++|+|||||||+|++
T Consensus        76 ~~~~~l~~l~~~~~i~~v~~n~~~~~~e~~rd~~v~~~l~~~gi~~~~~~~~~L~~p~~i~~~~g~~y~vFTpF~k~~~~  155 (185)
T d1u3da2          76 DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLS  155 (185)
T ss_dssp             CHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             42999999998519726988505308889889988788997498414357740027443346799998632899999984


Q ss_pred             HCCC
Q ss_conf             3156
Q gi|254781170|r  168 NLVQ  171 (483)
Q Consensus       168 ~~~~  171 (483)
                      ....
T Consensus       156 ~~~~  159 (185)
T d1u3da2         156 MPYD  159 (185)
T ss_dssp             CSSC
T ss_pred             CCCC
T ss_conf             7699


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: Cryptochrome
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]