HHSEARCH alignment of GI: 254781170 and SCOP domain: d2j07a2

Alignment
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=4.9e-36  Score=246.02  Aligned_cols=144  Identities=19%  Similarity=0.293  Sum_probs=131.7

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             68883586755677899999995798299999738378478889989999999999999999997598099996575350
Q gi|254781170|r   10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD   89 (483)
Q Consensus        10 ~IvWfRrDLRl~DN~aL~~A~~~~~~~vlpvyi~dp~~~~~~~~~~~~~~Fl~esL~~L~~~L~~~g~~L~v~~~~~~g~   89 (483)
                      .||||||||||+||+||.+|++.  ++|+||||+||..++   .|.+|.+|+++||.+|+++|+++|+.|+++.    |+
T Consensus         3 ~l~Wfr~DLRl~Dn~aL~~A~~~--~~vi~vfi~d~~~~~---~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~----G~   73 (170)
T d2j07a2           3 LLVWHRGDLRLHDHPALLEALAR--GPVVGLVVLDPNNLK---TTPRRRAWFLENVRALREAYRARGGALWVLE----GL   73 (170)
T ss_dssp             EEEEESSCCCSTTCHHHHHHHTT--SCEEEEEEECHHHHS---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE----SC
T ss_pred             EEEEECCCCCCCCHHHHHHHHHC--CCEEEEEEEECCCCH---HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HH
T ss_conf             99998997760306999999966--997999997054311---3577999998889999876401441045655----66


Q ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             89999999987097614210011100110010268887520000002234345557600237864432101479988631
Q gi|254781170|r   90 SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL  169 (483)
Q Consensus        90 ~~~~L~~l~~~~~i~~v~~n~~~~~~~~~rd~~i~~~l~~~~~~~~~~~~~l~~p~~i~~~~~~~~~vftpf~k~~~~~~  169 (483)
                      +.++|.+++++++|+.||+|++|++++++||+.|++.+.       ++++++++|+.+.++.+++|+|||||+|+|++..
T Consensus        74 ~~~~l~~l~~~~~i~~V~~n~~~~~~~~~rd~~v~~~l~-------~~~~~l~~p~~v~~~~~~~y~VFTpF~k~~~~~~  146 (170)
T d2j07a2          74 PWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALP-------VPLHLLPAPHLLPPDLPRAYRVYTPFSRLYRGAA  146 (170)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHCS-------SCEEEECCCCSSCTTCSSCCSSHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-------CCCEEECCCCEEECCCCCCCCCCCHHHHHHHCCC
T ss_conf             788899999985256777641410554578999876422-------6762633668653894899985478999986248


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: DNA photolyase
species: Thermus thermophilus [TaxId: 274]